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Paper Citation Record · LEDGER

GLProtein: Global-and-Local Structure Aware Protein Representation Learning

As of 18 August 2026, this Paper Citation Record lists 89 of 89 outbound references and 0 inbound Pith citation observations for arXiv:2506.06294.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2506.06294 v2

Coverage vector

measured 89 of 89 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-15T20:47:18.447082Z

measured 89 of 89 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-18T06:34:40.430872+00:00

measured 0 of 0 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: cited_works

Reference resolution

89 of 89 outbound references displayed

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  • verified fuzzy59
  • unresolved29
  • parse uncertain0
  • malformed identifier0
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External citation measurements

No source-named external measurement is stored.

Outbound references

Observation 9fbd53a6-9669-4da8-bc6d-f8c4f5e8d2e0 · outbound

This paper cites Is protein blast a thing of the past? nature communications , 14(1):8195, 2023.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Is protein blast a thing of the past? nature communications , 14(1):8195, 2023

Reference 1

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Observation 2eb0e2fe-f3cb-4641-8e5f-fe780ce181a2 · outbound

This paper cites Proteinnet: a standardized data set for machine learning of protein structure.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Proteinnet: a standardized data set for machine learning of protein structure

Reference 2

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Observation fe9fe0f5-41ed-4543-9014-b95a44b8addf · outbound

This paper cites Machine learning in protein structure prediction.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Machine learning in protein structure prediction

Reference 3

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Observation 3b6f298c-c39e-46ca-bf35-3d727bba1641 · outbound

This paper cites Layer Normalization.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Layer Normalization

Reference 4

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Observation 03e2e966-c741-43a4-bbcf-c7f9e4cccd5d · outbound

This paper cites Esm 2.0: State of the art and future potential of experience sampling methods in organizational research.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Esm 2.0: State of the art and future potential of experience sampling methods in organizational research

Reference 5

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Observation b5486db3-2b94-46f5-ab6c-c9b1c34bf830 · outbound

This paper cites Scope: classification of large macromolecular structures in the structural classification of proteins—extended database.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Scope: classification of large macromolecular structures in the structural classification of proteins—extended database

Reference 6

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Observation c9fddcce-159f-4283-addc-abf0300c2fc0 · outbound

This paper cites Endowing Protein Language Models with Structural Knowledge.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Endowing Protein Language Models with Structural Knowledge

Reference 7

Resolution
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Source-reported events for the cited work

Unavailable: canonical work link unavailable.

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Observation 79577b84-3d9b-4121-b4e9-f122469ddec9 · outbound

This paper cites Multifaceted protein--protein interaction prediction based on siamese residual rcnn.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Multifaceted protein--protein interaction prediction based on siamese residual rcnn

Reference 8

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Observation c68527cd-ef59-4117-8547-1238eff122b6 · outbound

This paper cites Machine learning methods for protein structure prediction.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Machine learning methods for protein structure prediction

Reference 9

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Observation 2eb39552-be86-4e67-a87a-3a593226a0ce · outbound

This paper cites Single-sequence protein structure prediction using a language model and deep learning.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Single-sequence protein structure prediction using a language model and deep learning

Reference 10

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Source-reported events for the cited work

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Observation 86a503c4-8836-401c-bd33-d708219252cf · outbound

This paper cites Protein stability prediction by fine-tuning a protein language model on a mega-scale dataset.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Protein stability prediction by fine-tuning a protein language model on a mega-scale dataset

Reference 11

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Observation 673fe6dd-1e39-4037-b431-652cce57aab3 · outbound

This paper cites Evaluation and improvement of multiple sequence methods for protein secondary structure prediction.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Evaluation and improvement of multiple sequence methods for protein secondary structure prediction

Reference 12

Resolution
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Observation 856499b1-c2e6-47f8-92f5-4c3aaf0eb440 · outbound

This paper cites Food without agriculture.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Food without agriculture

Reference 13

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Source-reported events for the cited work

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Observation 076762e5-44f0-4472-a2d6-c5f4a6ed463a · outbound

This paper cites BERT: Pre-training of Deep Bidirectional Transformers for Language Understanding.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning BERT: Pre-training of Deep Bidirectional Transformers for Language Understanding

Reference 14

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Observation 8478457a-83d6-4dcd-ae76-f554caa25875 · outbound

This paper cites Selective photoredox trifluoromethylation of tryptophan-containing peptides.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Selective photoredox trifluoromethylation of tryptophan-containing peptides

Reference 15

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Observation 53d37908-e55b-4e8e-ab41-b2c5e77a6bde · outbound

This paper cites Prottrans: Toward understanding the language of life through self-supervised learning.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Prottrans: Toward understanding the language of life through self-supervised learning

Reference 16

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Source-reported events for the cited work

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Observation 4d744521-2cdc-4a22-967a-2ffba8965692 · outbound

This paper cites Computational Protein Science in the Era of Large Language Models (LLMs).

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Computational Protein Science in the Era of Large Language Models (LLMs)

Reference 17

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Observation bfc9023d-3e7e-4b63-bbe1-e74c350a14f0 · outbound

This paper cites Protgpt2 is a deep unsupervised language model for protein design.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Protgpt2 is a deep unsupervised language model for protein design

Reference 18

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Observation db1134ab-c4f9-4838-8469-c6b2f3c402a6 · outbound

This paper cites Drugclip: Contrasive protein-molecule representation learning for virtual screening.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Drugclip: Contrasive protein-molecule representation learning for virtual screening

Reference 19

Resolution
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Observation 97a8b8a9-9620-47c8-8714-777fbe1f73ac · outbound

This paper cites What do molecular biologists mean when they say'structure determines function'? 2018.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning What do molecular biologists mean when they say'structure determines function'? 2018

Reference 20

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Observation 71c49583-9e2c-4527-8a80-a2ec2ff3d234 · outbound

This paper cites Roles of tau protein in health and disease.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Roles of tau protein in health and disease

Reference 21

Resolution
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Source-reported events for the cited work

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Observation 57b19b86-1fc3-43be-a18a-4bfa4c9ae1d4 · outbound

This paper cites Tm-vec: template modeling vectors for fast homology detection and alignment.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Tm-vec: template modeling vectors for fast homology detection and alignment

Reference 22

Resolution
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Observation d411388d-0f70-4197-a563-91ef1ffb9bfe · outbound

This paper cites Protein remote homology detection and structural alignment using deep learning.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Protein remote homology detection and structural alignment using deep learning

Reference 23

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Observation 354d8e45-0523-4160-b5a2-4df588bf3844 · outbound

This paper cites Predicting protein--protein interactions through sequence-based deep learning.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Predicting protein--protein interactions through sequence-based deep learning

Reference 24

Resolution
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Observation dd688212-e69b-4bde-895e-eace85c4c5ea · outbound

This paper cites Deep residual learning for image recognition.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Deep residual learning for image recognition

Reference 25

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Observation 8dde6fdb-e9b2-4606-93c1-9476bd7d59b9 · outbound

This paper cites Contrastive Representation Learning for 3D Protein Structures.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Contrastive Representation Learning for 3D Protein Structures

Reference 26

Resolution
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Observation b29ad7f3-ae4d-4250-877b-d33891511a6a · outbound

This paper cites A high-level programming language for generative protein design.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning A high-level programming language for generative protein design

Reference 27

Resolution
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Observation e7571010-6217-4477-959a-aba3f17efba1 · outbound

This paper cites Long short-term memory.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Long short-term memory

Reference 28

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Observation 79c37e63-1397-4907-bece-454aadda2e56 · outbound

This paper cites Deepsf: deep convolutional neural network for mapping protein sequences to folds.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Deepsf: deep convolutional neural network for mapping protein sequences to folds

Reference 29

Resolution
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Observation 64f84c1f-b61c-459b-8d11-9f7dbfe7051b · outbound

This paper cites Improving User Controlled Table-To-Text Generation Robustness.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Improving User Controlled Table-To-Text Generation Robustness

Reference 30

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Observation adf15ce9-df4f-4ba1-ae3f-2c5773ccaecf · outbound

This paper cites Protein 3d graph structure learning for robust structure-based protein property prediction.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Protein 3d graph structure learning for robust structure-based protein property prediction

Reference 31

Resolution
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Observation 29f5337d-0a4b-48c9-a324-a9530f99bf33 · outbound

This paper cites Mol2vec: unsupervised machine learning approach with chemical intuition.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Mol2vec: unsupervised machine learning approach with chemical intuition

Reference 32

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Observation 1cf409ef-3d64-429f-97b3-5430a8ebc39f · outbound

This paper cites Prediction of protein--protein interaction using graph neural networks.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Prediction of protein--protein interaction using graph neural networks

Reference 33

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Observation 57dde07a-5f91-40cd-ae66-2c853ce20755 · outbound

This paper cites Highly accurate protein structure prediction with alphafold.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Highly accurate protein structure prediction with alphafold

Reference 34

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Observation d80449ea-e0d1-46f6-947e-d90ebd187b99 · outbound

This paper cites plm-blast: distant homology detection based on direct comparison of sequence representations from protein language models.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning plm-blast: distant homology detection based on direct comparison of sequence representations from protein language models

Reference 35

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Source-reported events for the cited work

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Observation 21f53b0e-b055-43d6-b0c4-9c49c388208f · outbound

This paper cites Sequence-structure-function relationships in the microbial protein universe.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Sequence-structure-function relationships in the microbial protein universe

Reference 36

Resolution
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

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Observation 54f67f96-dc9a-4df7-8d38-0cc5dd540a3b · outbound

This paper cites Deep neural network based predictions of protein interactions using primary sequences.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Deep neural network based predictions of protein interactions using primary sequences

Reference 37

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

source=arxiv_source observed=2026-08-15T20:47:18.235230Z digest=sha256:d1c219c4f5e8a39439c74f2dfa8425e9940fd3271326899267b0f04b931a148d

Observation 7e17cf6a-b368-4e4b-b27b-2583072d73e8 · outbound

This paper cites Speak-to-Structure: Evaluating LLMs in Open-domain Natural Language-Driven Molecule Generation.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Speak-to-Structure: Evaluating LLMs in Open-domain Natural Language-Driven Molecule Generation

Reference 38

Resolution
unresolved
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Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-15T20:47:18.238781Z digest=sha256:a0c7ff63b8923a5a8def029e9c68fa8dd1c0d8494d495d03c992ebf26289b1aa

Observation cb466436-96c3-4db1-a309-a6e506a03eaf · outbound

This paper cites Empowering molecule discovery for molecule-caption translation with large language models: A chatgpt perspective.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Empowering molecule discovery for molecule-caption translation with large language models: A chatgpt perspective

Reference 39

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

source=arxiv_source observed=2026-08-15T20:47:18.242611Z digest=sha256:d519f9fb6455400103623a02eb5605ad4a37a7a277964f94262b07c0c9c15029

Observation 3ae34956-962a-485e-945d-fa2de8d95e4e · outbound

This paper cites MolReFlect: Towards In-Context Fine-grained Alignments between Molecules and Texts.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning MolReFlect: Towards In-Context Fine-grained Alignments between Molecules and Texts

Reference 40

Resolution
unresolved
no resolver link, observed 2026-08-15T20:47:18.246057Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-15T20:47:18.246057Z digest=sha256:482671e212e68e7c15ce37b464ed3810819987d3ec618908baafad1712c68e28

Observation 55fbbbea-ca1b-40d2-aadb-c4f0328dca23 · outbound

This paper cites Dietary protein sources, mediating biomarkers, and incidence of type 2 diabetes: findings from the women’s health initiative and the uk biobank.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Dietary protein sources, mediating biomarkers, and incidence of type 2 diabetes: findings from the women’s health initiative and the uk biobank

Reference 41

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

source=arxiv_source observed=2026-08-15T20:47:18.250184Z digest=sha256:d26b6dd9ec99edbd5902e460968898630985000fa7c5eba5a004bb1ade63d18d

Observation 43610b04-4445-4577-bcf1-8b202d408e6a · outbound

This paper cites Amino acids in cancer.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Amino acids in cancer

Reference 42

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

source=arxiv_source observed=2026-08-15T20:47:18.253769Z digest=sha256:302745602e9fd7171f876b67299fd922144f0f7afee0cd494b80cd0a42c90174

Observation 7e4df96b-64ca-4e6a-9460-7598a829dd40 · outbound

This paper cites Rapid and sensitive protein similarity searches.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Rapid and sensitive protein similarity searches

Reference 43

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

source=arxiv_source observed=2026-08-15T20:47:18.257945Z digest=sha256:994e1b0f04afb05f3112ebd900dda3aff015c2d8d04357091e27e7ffad2ea42e

Observation bd970dcc-85fb-4baa-8844-9df094d455ea · outbound

This paper cites Generative diffusion models on graphs: methods and applications.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Generative diffusion models on graphs: methods and applications

Reference 44

Resolution
verified fuzzy
raw_fallback, observed 2026-08-15T20:47:19.099897Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

source=arxiv_source observed=2026-08-15T20:47:18.262238Z digest=sha256:29264073a35cb4be72f72b8c8ff3c52aba5e2361c9b2db204e0eae373ff23acb

Observation a587f1ab-b5f4-4712-8797-5759779fba1a · outbound

This paper cites Generating 3D Molecules for Target Protein Binding.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Generating 3D Molecules for Target Protein Binding

Reference 45

Resolution
unresolved
no resolver link, observed 2026-08-15T20:47:18.266028Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-15T20:47:18.266028Z digest=sha256:1cf495566d381b2aaac2dbf95bfc13a45daec2b4a16e57469abae8cfc0485935

Observation d27ee7f0-e3f7-4001-824a-3293467b0b45 · outbound

This paper cites Biochemistry, essential amino acids.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Biochemistry, essential amino acids

Reference 46

Resolution
verified fuzzy
raw_fallback, observed 2026-08-15T20:47:19.088726Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

source=arxiv_source observed=2026-08-15T20:47:18.270739Z digest=sha256:8f7e0a9a7d5f25f0dd07e9567a3e5d123be22ff078e181bb62cb760ee1342970

Observation d8c435ec-6436-4e14-967e-a7a33ea7ae69 · outbound

This paper cites Learning Unknown from Correlations: Graph Neural Network for Inter-novel-protein Interaction Prediction.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Learning Unknown from Correlations: Graph Neural Network for Inter-novel-protein Interaction Prediction

Reference 47

Resolution
unresolved
no resolver link, observed 2026-08-15T20:47:18.274424Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-15T20:47:18.274424Z digest=sha256:2f559a1d01b2a339dc01e8e19a9f82970bdc9e17d520840f847e87bb83786206

Observation 0da3b067-84ee-4ae0-9202-671bfe2babec · outbound

This paper cites ProGen: Language Modeling for Protein Generation.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning ProGen: Language Modeling for Protein Generation

Reference 48

Resolution
unresolved
no resolver link, observed 2026-08-15T20:47:18.279092Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-15T20:47:18.279092Z digest=sha256:1caf3ce9c42e2569dfde36ab00b4fa39adbce4cc941c9dbeefe2f56802030a10

Observation 18ea6ed2-1407-4381-bd19-ef14fddb2809 · outbound

This paper cites Colabfold: making protein folding accessible to all.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Colabfold: making protein folding accessible to all

Reference 49

Resolution
verified fuzzy
raw_fallback, observed 2026-08-15T20:47:19.078269Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

source=arxiv_source observed=2026-08-15T20:47:18.283902Z digest=sha256:8adc5d946e891d40146679ba38b55d48d55792c2af13acec0d9f40ce65329eb2

Observation b001634f-f6b1-4ef7-9a8f-30b2f2c6abb5 · outbound

This paper cites Skempi: a structural kinetic and energetic database of mutant protein interactions and its use in empirical models.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Skempi: a structural kinetic and energetic database of mutant protein interactions and its use in empirical models

Reference 50

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

source=arxiv_source observed=2026-08-15T20:47:18.288140Z digest=sha256:c32269fd44358c784c6ba6d2d544db368feba854fca7592ce79b76428195bf79

Observation 94da4d30-b8eb-4c55-92e0-945632edce14 · outbound

This paper cites The language of proteins: Nlp, machine learning & protein sequences.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning The language of proteins: Nlp, machine learning & protein sequences

Reference 51

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

source=arxiv_source observed=2026-08-15T20:47:18.292021Z digest=sha256:848fbb0220d1b16387023fc45d7fa799a7bda7d7d76793c3c41891fbc97644a9

Observation 15e1166e-affa-4d70-b14a-7fe600c5a839 · outbound

This paper cites Pocket2mol: Efficient molecular sampling based on 3d protein pockets.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Pocket2mol: Efficient molecular sampling based on 3d protein pockets

Reference 52

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

source=arxiv_source observed=2026-08-15T20:47:18.296053Z digest=sha256:c142f16d65831d5d63581d56a98ce727049a2986f645c1923177247ff4f349e2

Observation 9f4daf5f-905b-44bf-993d-258d8a243f88 · outbound

This paper cites Protein nanofibrils for next generation sustainable water purification.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Protein nanofibrils for next generation sustainable water purification

Reference 53

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

source=arxiv_source observed=2026-08-15T20:47:18.299671Z digest=sha256:e3b3a3cda138a6029fbe9caf175944fad71bc54fe77ba6ddb89fed6b98c45c9e

Observation 521152d2-68b7-4d0a-a990-81fa98a89807 · outbound

This paper cites Evaluating protein transfer learning with tape.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Evaluating protein transfer learning with tape

Reference 54

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

source=arxiv_source observed=2026-08-15T20:47:18.303143Z digest=sha256:93be89d823e29af859acda17b9f392787d6a3e36b21f00269fa4ccbb23b099cd

Observation cc4c17ec-cb30-4ab4-bf24-d1d952be4196 · outbound

This paper cites Deeprank-gnn: a graph neural network framework to learn patterns in protein--protein interfaces.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Deeprank-gnn: a graph neural network framework to learn patterns in protein--protein interfaces

Reference 55

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

source=arxiv_source observed=2026-08-15T20:47:18.306733Z digest=sha256:d2db9a31ed0d52f2af558efed819ba9645a839321b40151b64a78fe79c324c51

Observation eef10e92-e402-46a3-8a97-931ed02ce7d3 · outbound

This paper cites Deeprank: a deep learning framework for data mining 3d protein-protein interfaces.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Deeprank: a deep learning framework for data mining 3d protein-protein interfaces

Reference 56

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

source=arxiv_source observed=2026-08-15T20:47:18.310526Z digest=sha256:2c8259ff2c441a3acfb30fdb6757496924245db13b9312cc98ec8320527cfefd

Observation 13090f02-d566-44b2-ab83-2580274b1fc9 · outbound

This paper cites Cellular agriculture—industrial biotechnology for food and materials.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Cellular agriculture—industrial biotechnology for food and materials

Reference 57

Resolution
verified fuzzy
raw_fallback, observed 2026-08-15T20:47:18.984835Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

source=arxiv_source observed=2026-08-15T20:47:18.314191Z digest=sha256:71a85355f624e5b65875a323acac5be05728085a45268ed9492ebce9b9269074

Observation b3c84b9b-3c06-475a-8796-5daa38faa429 · outbound

This paper cites Biological structure and function emerge from scaling unsupervised learning to 250 million protein sequences.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Biological structure and function emerge from scaling unsupervised learning to 250 million protein sequences

Reference 58

Resolution
unresolved
no resolver link, observed 2026-08-15T20:47:18.317712Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-15T20:47:18.317712Z digest=sha256:e206559325b12ca5628b68da756d16b2a7ff0bef5fe591708bf6ddd88aef79fc

Observation 5118750e-3ac8-4749-b3cb-9a5b0a0d784b · outbound

This paper cites Global analysis of protein folding using massively parallel design, synthesis, and testing.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Global analysis of protein folding using massively parallel design, synthesis, and testing

Reference 59

Resolution
verified fuzzy
raw_fallback, observed 2026-08-15T20:47:18.966331Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

source=arxiv_source observed=2026-08-15T20:47:18.321733Z digest=sha256:ded4607f4e6b5941aeb7ec4bec0ce46155115c98432faa76aa6a0c7a88c43c28

Observation 934be436-4c79-4c1f-bf16-dc865dae2e05 · outbound

This paper cites Comparing support vector machines with gaussian kernels to radial basis function classifiers.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Comparing support vector machines with gaussian kernels to radial basis function classifiers

Reference 60

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

source=arxiv_source observed=2026-08-15T20:47:18.325858Z digest=sha256:dac88b4c3fe77904328a0eb8115a1fd32de0af434d1c41a1fbbde8bbe68b57e9

Observation aa283bf5-5523-4074-ab17-c91847547ca1 · outbound

This paper cites Spot-contact-lm: improving single-sequence-based prediction of protein contact map using a transformer language model.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Spot-contact-lm: improving single-sequence-based prediction of protein contact map using a transformer language model

Reference 61

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

source=arxiv_source observed=2026-08-15T20:47:18.330312Z digest=sha256:731107c361e11f20c1bb1cbeadbdb2006a0f6284c5ae002af575cba4300e08ba

Observation 1ce051a0-9fa9-42ed-bff6-5b35972cefe6 · outbound

This paper cites Computational methods in drug discovery.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Computational methods in drug discovery

Reference 62

Resolution
verified fuzzy
raw_fallback, observed 2026-08-15T20:47:18.929691Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

source=arxiv_source observed=2026-08-15T20:47:18.334368Z digest=sha256:f0b1425d473de7450cedfd6300a5c561d1e03da20686d48eaa811d7308d2693d

Observation d00629e3-d109-482b-ac64-a83678b2006f · outbound

This paper cites Advanced microbial protein technologies are promising for supporting global food-feed supply chains with positive environmental impacts.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Advanced microbial protein technologies are promising for supporting global food-feed supply chains with positive environmental impacts

Reference 63

Resolution
verified fuzzy
raw_fallback, observed 2026-08-15T20:47:18.917969Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

source=arxiv_source observed=2026-08-15T20:47:18.338093Z digest=sha256:97f2ca90a50ba930f29f589cb882407736aa5ffa1000b2952ca196f7f0b8c6b7

Observation 25e2dfb1-5f35-46c0-a52b-f1816c263da8 · outbound

This paper cites Multi-scale representation learning on proteins.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Multi-scale representation learning on proteins

Reference 64

Resolution
verified fuzzy
raw_fallback, observed 2026-08-15T20:47:18.906641Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

source=arxiv_source observed=2026-08-15T20:47:18.341847Z digest=sha256:4fed4261ecc77d12136f4d0c3971ef54eaf2baca4e2480a1b699d3b39234acf9

Observation c7618361-63f6-40cb-bed8-98e019248323 · outbound

This paper cites Saprot: Protein language modeling with structure-aware vocabulary.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Saprot: Protein language modeling with structure-aware vocabulary

Reference 65

Resolution
verified fuzzy
raw_fallback, observed 2026-08-15T20:47:18.895311Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

source=arxiv_source observed=2026-08-15T20:47:18.346810Z digest=sha256:354afd40fc9fc7fbcdf81861abedd38b86ad71ed1cff838449eb7dfb8f427aa2

Observation 931e2e8e-c9e2-49bc-bbf0-081fa860a7df · outbound

This paper cites Uniref: comprehensive and non-redundant uniprot reference clusters.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Uniref: comprehensive and non-redundant uniprot reference clusters

Reference 66

Resolution
verified fuzzy
raw_fallback, observed 2026-08-15T20:47:18.882255Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

source=arxiv_source observed=2026-08-15T20:47:18.350622Z digest=sha256:ebeb1f8af65964395f2baa0c580f98225b5efd21feb795922f1809e370012dca

Observation 5031b161-ad84-470d-a25b-79bf47d6e2d7 · outbound

This paper cites Uniref clusters: a comprehensive and scalable alternative for improving sequence similarity searches.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Uniref clusters: a comprehensive and scalable alternative for improving sequence similarity searches

Reference 67

Resolution
verified fuzzy
raw_fallback, observed 2026-08-15T20:47:18.870188Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

source=arxiv_source observed=2026-08-15T20:47:18.354243Z digest=sha256:10c57d976d554b85190d01e1314c4b7168332ad01bd43ccbbedaf5edb18eec6f

Observation e019318b-87c7-4400-93b8-f4b73a8daacb · outbound

This paper cites Deep learning methods in protein structure prediction.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Deep learning methods in protein structure prediction

Reference 68

Resolution
verified fuzzy
raw_fallback, observed 2026-08-15T20:47:18.857335Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

source=arxiv_source observed=2026-08-15T20:47:18.358121Z digest=sha256:7e9b56864aa6d6ccc8fcc33f02635c7e19ef574732f9856c12f77670d8f02a32

Observation a4da31cb-5f74-4229-82b9-62f5ec6fcdd0 · outbound

This paper cites Harnessing protein folding neural networks for peptide--protein docking.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Harnessing protein folding neural networks for peptide--protein docking

Reference 69

Resolution
verified fuzzy
raw_fallback, observed 2026-08-15T20:47:18.845902Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

source=arxiv_source observed=2026-08-15T20:47:18.361834Z digest=sha256:743a13237c58c5d494cb3835a3c5a1a1fd739f921731b93154bdbf5358e0104e

Observation 96f12a94-81c0-438c-8957-70ac5b90e389 · outbound

This paper cites Learning functional properties of proteins with language models.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Learning functional properties of proteins with language models

Reference 70

Resolution
verified fuzzy
raw_fallback, observed 2026-08-15T20:47:18.834227Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

source=arxiv_source observed=2026-08-15T20:47:18.366799Z digest=sha256:128443d6a59b9cde3c3dd3063066aa58ec7dc68d81fef09556d19135dfc87747

Observation 3e657758-0d57-4f77-beb8-472972750490 · outbound

This paper cites Attention is all you need.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Attention is all you need

Reference 71

Resolution
unresolved
no resolver link, observed 2026-08-15T20:47:18.370605Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-15T20:47:18.370605Z digest=sha256:6ed353d5d63387449ff2f3ab9e7673e5196b51995e2bb13ab488563772c1d596

Observation f5ee2676-d42a-4095-ba1d-9f93c9f40126 · outbound

This paper cites Language models generalize beyond natural proteins.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Language models generalize beyond natural proteins

Reference 72

Resolution
verified fuzzy
raw_fallback, observed 2026-08-15T20:47:18.814767Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

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Observation b2f2c817-98f4-41bc-835d-785b729ad496 · outbound

This paper cites A high efficient biological language model for predicting protein--protein interactions.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning A high efficient biological language model for predicting protein--protein interactions

Reference 73

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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

source=arxiv_source observed=2026-08-15T20:47:18.378076Z digest=sha256:b9973564548c48d770931459dcca8678989ca26a51e10099de91a57da5f528ea

Observation 933c6f1b-c875-4478-b07b-0757ff39a70b · outbound

This paper cites Lm-gvp: an extensible sequence and structure informed deep learning framework for protein property prediction.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Lm-gvp: an extensible sequence and structure informed deep learning framework for protein property prediction

Reference 74

Resolution
verified fuzzy
raw_fallback, observed 2026-08-15T20:47:18.791114Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

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Observation a0f7c67a-980c-46e7-9e34-236f23e133a4 · outbound

This paper cites Late-stage photoredox c--h amidation of n-unprotected indole derivatives: Access to n-(indol-2-yl) amides.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Late-stage photoredox c--h amidation of n-unprotected indole derivatives: Access to n-(indol-2-yl) amides

Reference 75

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

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Observation 361c2013-431e-42da-aff2-de4786b36fb9 · outbound

This paper cites Environmental dimensions of the protein corona.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Environmental dimensions of the protein corona

Reference 76

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

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Observation 98982867-6479-499f-88cf-7538f7514861 · outbound

This paper cites Plasma protein patterns as comprehensive indicators of health.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Plasma protein patterns as comprehensive indicators of health

Reference 77

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

source=arxiv_source observed=2026-08-15T20:47:18.393424Z digest=sha256:b722d019191e4779289f2acd398f7b4b2a67ee31d21e789710cb4060d87d7ce4

Observation 0ea38776-5f1e-48da-8fd9-4038bcd730e5 · outbound

This paper cites Modeling Protein Using Large-scale Pretrain Language Model.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Modeling Protein Using Large-scale Pretrain Language Model

Reference 78

Resolution
unresolved
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Source-reported events for the cited work

Unavailable: canonical work link unavailable.

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Observation 7c1859e8-9114-4a65-b69d-986c2053dfe5 · outbound

This paper cites How significant is a protein structure similarity with tm-score= 0.5? Bioinformatics , 26(7):889--895, 2010.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning How significant is a protein structure similarity with tm-score= 0.5? Bioinformatics , 26(7):889--895, 2010

Reference 79

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

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Observation ad1f50fc-8c0b-4192-9273-4370120a21b8 · outbound

This paper cites Deeprank-gnn-esm: a graph neural network for scoring protein--protein models using protein language model.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Deeprank-gnn-esm: a graph neural network for scoring protein--protein models using protein language model

Reference 80

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

source=arxiv_source observed=2026-08-15T20:47:18.406390Z digest=sha256:956e1c8330d332d027512f00a5a41d8d29500bbfdba6fe4a7c4f4cb6bbeacb18

Observation 8f17427f-f6d9-4849-b156-c6814354f193 · outbound

This paper cites Do transformers really perform badly for graph representation? Advances in neural information processing systems , 34:28877--28888, 2021.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Do transformers really perform badly for graph representation? Advances in neural information processing systems , 34:28877--28888, 2021

Reference 81

Resolution
unresolved
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Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-15T20:47:18.411415Z digest=sha256:527f5d934137bf8cb9b69ba4e4cac4bd528d1732d98757966168fac6415f0bb2

Observation 73f9fd1b-3cb0-4205-9e3b-ca21d860dc3f · outbound

This paper cites Diatom adhesive trail proteins acquired by horizontal gene transfer from bacteria serve as primers for marine biofilm formation.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Diatom adhesive trail proteins acquired by horizontal gene transfer from bacteria serve as primers for marine biofilm formation

Reference 82

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

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Observation e88a020f-cacd-4af1-9b58-d291277d26d0 · outbound

This paper cites Ontoprotein: Protein pretraining with gene ontology embedding.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Ontoprotein: Protein pretraining with gene ontology embedding

Reference 83

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

source=arxiv_source observed=2026-08-15T20:47:18.419982Z digest=sha256:113ee9f4e8fad4614a695c1281fcbc5c63c6bd59bdecc5872dc403635784586f

Observation 119c959d-7c0d-437b-9e6d-2fc8ba56592a · outbound

This paper cites Scoring function for automated assessment of protein structure template quality.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Scoring function for automated assessment of protein structure template quality

Reference 84

Resolution
unresolved
no resolver link, observed 2026-08-15T20:47:18.424351Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-15T20:47:18.424351Z digest=sha256:4f0995690ef87796cca73fef538e2a138d0205975023d6d9e96772cc4b43af20

Observation e4ef6a50-976a-4b40-8b91-fa49478defb7 · outbound

This paper cites Protein Representation Learning by Geometric Structure Pretraining.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Protein Representation Learning by Geometric Structure Pretraining

Reference 85

Resolution
unresolved
no resolver link, observed 2026-08-15T20:47:18.431637Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-15T20:47:18.431637Z digest=sha256:1cfd728504f02cf84fffad0c95bb2cbbb9583b113ca8d6f86b0426ec6701009c

Observation 89ea7161-e465-455f-9710-ffd371de888a · outbound

This paper cites Holistic food system innovation strategies can close up to 80\ Nature Food , pages 1--11, 2024.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Holistic food system innovation strategies can close up to 80\ Nature Food , pages 1--11, 2024

Reference 86

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

source=arxiv_source observed=2026-08-15T20:47:18.435942Z digest=sha256:f3402719012fc87de2d6dc5ab7dfdc3511cadf88453e2b12883bfe79dd7bfb53

Observation ea3a2e51-7510-485a-ab49-967035a212f6 · outbound

This paper cites Exploring the computational methods for protein-ligand binding site prediction.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Exploring the computational methods for protein-ligand binding site prediction

Reference 87

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

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Observation ffb625bc-a15e-40c8-ae8a-faa29b1d417c · outbound

This paper cites Recommender systems in the era of large language models (llms).

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Recommender systems in the era of large language models (llms)

Reference 88

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

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Observation 2fc94d44-e4ec-404e-b8d8-744087a4966f · outbound

This paper cites Protein representation learning via knowledge enhanced primary structure reasoning.

GLProtein: Global-and-Local Structure Aware Protein Representation Learning Protein representation learning via knowledge enhanced primary structure reasoning

Reference 89

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

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Pith citing papers

No inbound Pith citation observations are available.