Paper Citation Record · LEDGER

Protriever: End-to-End Differentiable Protein Homology Search for Fitness Prediction

As of 7 August 2026, this Paper Citation Record lists 13 of 13 outbound references and 1 inbound Pith citation observation for arXiv:2506.08954.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2506.08954 v1

Coverage vector

measured 13 of 13 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-07T05:05:12.256372Z

measured 14 of 14 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-07T06:34:17.273281+00:00

measured 1 of 1 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links, observed 2026-08-01T16:52:44.030075Z

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: cited_works

Reference resolution

13 of 13 outbound references displayed

verified exact4
verified fuzzy1
unresolved5
parse uncertain0
malformed identifier3
metadata mismatch0

External citation measurements

No source-named external measurement is stored.

Outbound references

Observation 730664f7-0f81-4239-8d70-4b0965f1777f · outbound

This paper cites ProGen: Language Modeling for Protein Generation.

Protriever: End-to-End Differentiable Protein Homology Search for Fitness Prediction ProGen: Language Modeling for Protein Generation

Reference 2

Resolution: unresolved; no resolver link, observed 2026-08-07T05:05:11.902139Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 7e47bbbd-4f17-496b-8e84-09ebf2ea249b · outbound

This paper cites doi: 10.1016/j.cels.2023.10.

Protriever: End-to-End Differentiable Protein Homology Search for Fitness Prediction doi: 10.1016/j.cels.2023.10

Reference 8

Resolution: verified exact; doi, observed 2026-08-07T05:05:12.974805Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 2ef4f59b-1ef6-4d47-b42a-a95797af28d7 · outbound

This paper cites Tranception: protein fitness prediction with autoregressive transformers and inference-time retrieval.

Protriever: End-to-End Differentiable Protein Homology Search for Fitness Prediction Tranception: protein fitness prediction with autoregressive transformers and inference-time retrieval

Reference 9

Resolution: unresolved; no resolver link, observed 2026-08-07T05:05:12.054278Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation efa1bc8e-e17a-4d7e-b986-db4cf8e86f6b · outbound

This paper cites Publisher: Nature Publishing Group.

Protriever: End-to-End Differentiable Protein Homology Search for Fitness Prediction Publisher: Nature Publishing Group

Reference 13

Resolution: malformed identifier; no resolver link, observed 2026-08-07T05:05:12.256372Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 0a58b600-cbd1-476b-8d87-9181a004b9d1 · outbound

This paper cites doi: 10.1016/S0167-7306(08)60461-5.

Protriever: End-to-End Differentiable Protein Homology Search for Fitness Prediction doi: 10.1016/S0167-7306(08)60461-5

Reference 63

Resolution: verified exact; doi, observed 2026-08-07T05:05:13.459285Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 72c2e9eb-7cea-45eb-868d-3c41aff98f5d · outbound

This paper cites URL https://www.nature.

Protriever: End-to-End Differentiable Protein Homology Search for Fitness Prediction URL https://www.nature

Reference 1696

Resolution: unresolved; no resolver link, observed 2026-08-07T05:05:12.091764Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation ddbfc062-a4f9-4b99-bf4d-abb722e79021 · outbound

This paper cites Leveraging Passage Retrieval with Generative Models for Open Domain Question Answering.

Protriever: End-to-End Differentiable Protein Homology Search for Fitness Prediction Leveraging Passage Retrieval with Generative Models for Open Domain Question Answering

Reference 1994

Resolution: unresolved; no resolver link, observed 2026-08-07T05:05:11.692889Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation d712cb07-57ff-4328-9641-1633afa28cd4 · outbound

This paper cites The Faiss library.

Protriever: End-to-End Differentiable Protein Homology Search for Fitness Prediction The Faiss library

Reference 2015

Resolution: unresolved; no resolver link, observed 2026-08-07T05:05:11.564269Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation d2461f31-6af5-4b79-9e3d-7ed37bdc7d85 · outbound

This paper cites ISSN: 2640-3498.

Protriever: End-to-End Differentiable Protein Homology Search for Fitness Prediction ISSN: 2640-3498

Reference 2020

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T05:05:13.898960Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 4d55c286-e5f8-4501-8507-b8b697585606 · outbound

This paper cites doi: 10.1038/s42256-022-00465-.

Protriever: End-to-End Differentiable Protein Homology Search for Fitness Prediction doi: 10.1038/s42256-022-00465-

Reference 2022

Resolution: malformed identifier; doi_truncated, observed 2026-08-07T05:05:12.500317Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 377270f4-1781-4ae4-ab95-0033564e5e0e · outbound

This paper cites doi: 10.1038/s41592-022-01700-.

Protriever: End-to-End Differentiable Protein Homology Search for Fitness Prediction doi: 10.1038/s41592-022-01700-

Reference 2023

Resolution: malformed identifier; doi_truncated, observed 2026-08-07T05:05:13.217533Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation cbfbd359-8e8c-474a-8089-04736b10e0f1 · outbound

This paper cites URL https://doi.

Protriever: End-to-End Differentiable Protein Homology Search for Fitness Prediction URL https://doi

Reference 2105

Resolution: verified exact; raw_fallback, observed 2026-08-07T05:05:13.703263Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 26288fdd-6b18-45e9-9a15-38b545be30a7 · outbound

This paper cites an unresolved cited work.

Protriever: End-to-End Differentiable Protein Homology Search for Fitness Prediction Unresolved cited work

Reference 4673

Resolution: verified exact; doi, observed 2026-08-07T05:05:12.696596Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Pith citing papers

Observation 16777a24-f591-4168-ab93-6d1975713806 · inbound

Knowledge before Reasoning: EC-Reason-Bench, a Training-Free Diagnostic Benchmark for LLM Enzyme Classification cites this paper.

Knowledge before Reasoning: EC-Reason-Bench, a Training-Free Diagnostic Benchmark for LLM Enzyme Classification Protriever: End-to-End Differentiable Protein Homology Search for Fitness Prediction

Reference 21

Resolution: unresolved; no resolver link, observed 2026-08-01T16:52:44.030075Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.