SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics | Paper Citation Record

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This paper cites write newline.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics write newline

Reference 1

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Observation 6d2c0603-4c7d-4423-be7c-2541146c4ff7 · outbound

This paper cites 10xgenomics datasets.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics 10xgenomics datasets

Reference 2

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SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics Unresolved cited work

Reference 3

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Observation 7c0c5b59-717a-4d6e-aca4-afb98eddaac7 · outbound

This paper cites J., Bambrick, J., et al.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics J., Bambrick, J., et al

Reference 4

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Observation fbf96464-41a1-4504-97de-ecf9d66f95bb · outbound

This paper cites H., Anderson, C.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics H., Anderson, C

Reference 5

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Observation e5a19839-73cb-4b01-b00b-5b697bca2e18 · outbound

This paper cites E., Blosser, T.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics E., Blosser, T

Reference 6

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Observation 5637ad4d-3154-40f2-94ba-20c39affd894 · outbound

This paper cites and Fan, J.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics and Fan, J

Reference 7

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Observation 6095de9b-58cc-42e3-bf9a-a5e66578802f · outbound

This paper cites and Pir, P.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics and Pir, P

Reference 8

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Observation 337975cb-0227-4b67-9a7e-8a0dc90df80d · outbound

This paper cites R., Segerstolpe, ., Zhang, M., et al.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics R., Segerstolpe, ., Zhang, M., et al

Reference 9

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Observation 9ca72c2b-4679-4fdd-a544-703e655f9aeb · outbound

This paper cites S.-C., Abdulla, S., Aevermann, B., Assis, P., Badajoz, S., Bell, S.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics S.-C., Abdulla, S., Aevermann, B., Assis, P., Badajoz, S., Bell, S

Reference 10

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SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics Unresolved cited work

Reference 11

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Observation a76f14a7-b723-486b-9958-9bc15917b41f · outbound

This paper cites Gcnet: Non-local networks meet squeeze-excitation networks and beyond.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics Gcnet: Non-local networks meet squeeze-excitation networks and beyond

Reference 12

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T17:16:19.419908Z

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Observation db7f6a93-914f-4261-9473-b035a8854fe8 · outbound

This paper cites S., Rowsell, C., Plataniotis, K.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics S., Rowsell, C., Plataniotis, K

Reference 13

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Observation e03d7c5d-41b3-4b9e-abe1-c1f17549e14e · outbound

This paper cites Spatiotemporal transcriptomic atlas of mouse organogenesis using dna nanoball-patterned arrays.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics Spatiotemporal transcriptomic atlas of mouse organogenesis using dna nanoball-patterned arrays

Reference 14

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T17:16:19.027432Z

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Observation 4cff770c-19e1-4c87-9895-4457e4e122df · outbound

This paper cites Stimage-1k4m: A histopathology image-gene expression dataset for spatial transcriptomics.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics Stimage-1k4m: A histopathology image-gene expression dataset for spatial transcriptomics

Reference 15

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Observation 5221844e-1617-44e2-bb69-71a4f1d49043 · outbound

This paper cites H., Boettiger, A.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics H., Boettiger, A

Reference 16

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Observation 0d31c51c-3bb1-4a5c-8542-ac1c269d27ac · outbound

This paper cites A cellular resolution spatial transcriptomic landscape of the medial structures in postnatal mouse brain.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics A cellular resolution spatial transcriptomic landscape of the medial structures in postnatal mouse brain

Reference 17

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Observation 0eb57d12-c604-45c2-bfec-aad3304642e1 · outbound

This paper cites Cellama: Foundation model for single cell and spatial transcriptomics by cell embedding leveraging language model abilities.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics Cellama: Foundation model for single cell and spatial transcriptomics by cell embedding leveraging language model abilities

Reference 18

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Observation d64c9757-81df-4cc4-aecd-206f295ce11e · outbound

This paper cites X., Maan, H., Pang, K., Luo, F., and Wang, B.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics X., Maan, H., Pang, K., Luo, F., and Wang, B

Reference 19

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Observation 4a1ff757-5ca7-4b70-8172-7dd9801e739d · outbound

This paper cites Cross-tissue immune cell analysis reveals tissue-specific features in humans.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics Cross-tissue immune cell analysis reveals tissue-specific features in humans

Reference 20

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Observation 50a7a45a-7e67-4e7c-b744-fc0ba2339f95 · outbound

This paper cites and Zhang, S.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics and Zhang, S

Reference 21

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Observation 4ed5a08c-1d1b-4ff7-9436-1f7a75a86f08 · outbound

This paper cites Advances in spatial transcriptomics and related data analysis strategies.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics Advances in spatial transcriptomics and related data analysis strategies

Reference 22

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Observation 07c36a1a-74ab-40a3-9857-8baec9ba4086 · outbound

This paper cites P., Collin, A., Oag, S., Volckaert, T., Borde, A., et al.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics P., Collin, A., Oag, S., Volckaert, T., Borde, A., et al

Reference 23

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T17:16:17.563607Z

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Observation aa8654b2-4125-4c13-850b-e66bbd804b75 · outbound

This paper cites S im CSE : Simple contrastive learning of sentence embeddings.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics S im CSE : Simple contrastive learning of sentence embeddings

Reference 24

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Observation ab1e974e-e072-4a32-a735-648d929c2e6d · outbound

This paper cites xTrimoGene: An Efficient and Scalable Representation Learner for Single-Cell RNA-Seq Data.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics xTrimoGene: An Efficient and Scalable Representation Learner for Single-Cell RNA-Seq Data

Reference 25

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Observation a91fb2d7-73f0-4e92-a224-2cbd95299b9b · outbound

This paper cites T., and Zhang, X.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics T., and Zhang, X

Reference 26

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Observation 1650c7f8-7720-4562-b203-02c3155baf8b · outbound

This paper cites W., Amode, M.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics W., Amode, M

Reference 27

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No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 02b22ee0-a2e9-4ea5-9275-a074ecd9cecb · outbound

This paper cites V., Sadick, J.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics V., Sadick, J

Reference 28

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Observation fd9d6e71-a782-484b-8564-1b4ba553077b · outbound

This paper cites Detisseg: A dual-encoder network for tissue semantic segmentation of histopathology image.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics Detisseg: A dual-encoder network for tissue semantic segmentation of histopathology image

Reference 29

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T17:16:17.053234Z

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Observation 73f7f11c-2d05-4e90-9f62-adf5a740bf89 · outbound

This paper cites A., Buhr, D.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics A., Buhr, D

Reference 30

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Observation c94b357c-b657-41e6-9783-06ee6d4595c8 · outbound

This paper cites Hesta: Human embryogenesis spatiotemporal transcriptomic atlas.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics Hesta: Human embryogenesis spatiotemporal transcriptomic atlas

Reference 31

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T17:16:16.650341Z

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Observation 1ee8087e-a7af-4d96-b8c2-ec3de38534dc · outbound

This paper cites Y., Almagro P \'e rez, C., Wagner, S., Vaidya, A., Chen, R., Williamson, D., Kim, A., et al.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics Y., Almagro P \'e rez, C., Wagner, S., Vaidya, A., Chen, R., Williamson, D., Kim, A., et al

Reference 32

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T17:16:16.389554Z

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No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 2bff9411-8124-4858-a4bf-0291d7a4c1ce · outbound

This paper cites xmint: A multimodal integration transformer for xenium gene imputation.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics xmint: A multimodal integration transformer for xenium gene imputation

Reference 33

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T17:16:16.136849Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 530a0751-e1bc-4fb9-8cc9-db51cc2110fe · outbound

This paper cites Advances in spatial transcriptomics and its applications in cancer research.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics Advances in spatial transcriptomics and its applications in cancer research

Reference 34

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T17:16:15.924010Z

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No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 14073efc-d76b-4b3e-a52a-f46a7a627f79 · outbound

This paper cites Highly accurate protein structure prediction with alphafold.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics Highly accurate protein structure prediction with alphafold

Reference 35

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Observation 8ad4cfd0-c417-4eed-8d15-30b33701c6c4 · outbound

This paper cites and Kim, T.-K.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics and Kim, T.-K

Reference 36

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T17:16:15.704773Z

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No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 81e74b00-6261-464d-8deb-86966573153b · outbound

This paper cites A., L \'e vy, S., Pallikkavaliyaveetil, N., Zhang, D., Chen, X., Ghadermarzi, S., Wu, R., Zheng, Z., Vrkic, I., et al.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics A., L \'e vy, S., Pallikkavaliyaveetil, N., Zhang, D., Chen, X., Ghadermarzi, S., Wu, R., Zheng, Z., Vrkic, I., et al

Reference 37

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No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 303f6944-0060-450f-9fd8-9dd92298ebac · outbound

This paper cites A comprehensive benchmarking with practical guidelines for cellular deconvolution of spatial transcriptomics.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics A comprehensive benchmarking with practical guidelines for cellular deconvolution of spatial transcriptomics

Reference 38

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T17:16:15.223772Z

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Observation 38dfd5ca-3bd8-47ca-aa3a-920d8e75dbeb · outbound

This paper cites ST-Align: A Multimodal Foundation Model for Image-Gene Alignment in Spatial Transcriptomics.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics ST-Align: A Multimodal Foundation Model for Image-Gene Alignment in Spatial Transcriptomics

Reference 39

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Observation 308b63c1-8a1c-4cdc-a34f-f98813c160fb · outbound

This paper cites Evaluating the utilities of foundation models in single-cell data analysis.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics Evaluating the utilities of foundation models in single-cell data analysis

Reference 40

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T17:16:15.023493Z

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No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation afb43e6a-9340-4920-a13c-e85a385244d2 · outbound

This paper cites Swin transformer: Hierarchical vision transformer using shifted windows.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics Swin transformer: Hierarchical vision transformer using shifted windows

Reference 41

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Observation a309d8c1-29ba-42be-81a0-964afc3b8dc5 · outbound

This paper cites Method of the year: spatially resolved transcriptomics.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics Method of the year: spatially resolved transcriptomics

Reference 42

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T17:16:14.832577Z

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Observation 3efecd34-4190-43b7-89a5-6e48f536ea54 · outbound

This paper cites R., Collado-Torres, L., Weber, L.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics R., Collado-Torres, L., Weber, L

Reference 43

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T17:16:14.525037Z

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No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 295cd5fd-da03-4153-875e-8711dc742605 · outbound

This paper cites Cosmx™ smi datasets.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics Cosmx™ smi datasets

Reference 44

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T17:16:14.166009Z

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No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation fae6358d-e83b-47ee-a9a9-5162d55d2955 · outbound

This paper cites Spatiotemporal transcriptome atlas of human embryos after gastrulation.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics Spatiotemporal transcriptome atlas of human embryos after gastrulation

Reference 45

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T17:16:13.700006Z

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No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 5108188e-b4d4-4a77-9601-74a4143cc8e2 · outbound

This paper cites C., Tejada-Lapuerta, A., Palla, G., Gutgesell, R., Halle, L., Minaeva, M., Vornholz, L., Dony, L., Drummer, F., Bahrami, M., et al.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics C., Tejada-Lapuerta, A., Palla, G., Gutgesell, R., Halle, L., Minaeva, M., Vornholz, L., Dony, L., Drummer, F., Bahrami, M., et al

Reference 46

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T17:16:13.424896Z

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No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation c7d23bfe-af35-4693-8a56-8309d9f0d840 · outbound

This paper cites Seekspace single-cell transcriptomics technology.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics Seekspace single-cell transcriptomics technology

Reference 47

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T17:16:13.076144Z

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No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 8cc4426b-c076-440a-9340-97ca5579c19b · outbound

This paper cites Spatial atlas of the mouse central nervous system at molecular resolution.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics Spatial atlas of the mouse central nervous system at molecular resolution

Reference 48

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T17:16:12.725457Z

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Observation 95b65f96-0c28-4ec2-9c5c-8bde67f2d7c2 · outbound

This paper cites Rotation Invariant Graph Neural Networks using Spin Convolutions.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics Rotation Invariant Graph Neural Networks using Spin Convolutions

Reference 49

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Observation ad382c33-bf04-4a4b-bf0a-cdd077a7f468 · outbound

This paper cites L., Salm \'e n, F., Vickovic, S., Lundmark, A., Navarro, J.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics L., Salm \'e n, F., Vickovic, S., Lundmark, A., Navarro, J

Reference 50

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T17:16:12.381720Z

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No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 6d469723-0290-44d9-a5d2-65d73993ed77 · outbound

This paper cites R., Murray, E., Kumar, P., Li, J., Marshall, J.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics R., Murray, E., Kumar, P., Li, J., Marshall, J

Reference 51

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T17:16:12.033231Z

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No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 034d7a07-9c01-43fb-8dc8-0110e1c96007 · outbound

This paper cites an unresolved cited work.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics Unresolved cited work

Reference 52

Resolution: unresolved; raw_fallback, observed 2026-08-06T17:16:11.625232Z

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No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 555b7be2-63f6-4f49-bb72-2c55bab7e5db · outbound

This paper cites an unresolved cited work.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics Unresolved cited work

Reference 53

Resolution: unresolved; raw_fallback, observed 2026-08-06T17:16:11.277413Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 3cc6cc5b-987a-4a07-9d1e-e910a4669fb1 · outbound

This paper cites an unresolved cited work.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics Unresolved cited work

Reference 54

Resolution: unresolved; raw_fallback, observed 2026-08-06T17:16:11.095202Z

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No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 7a6818ec-034d-494c-a927-9369fe55cc86 · outbound

This paper cites V., Xiao, L., Chopra, A., Chaffin, M.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics V., Xiao, L., Chopra, A., Chaffin, M

Reference 55

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T17:16:10.893102Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation ec23c79a-f85d-4145-921b-7d3fe46099de · outbound

This paper cites A., Waltman, L., and Van Eck, N.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics A., Waltman, L., and Van Eck, N

Reference 56

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T17:16:10.763260Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 10b3f45d-2c62-448a-8dcd-a5d0081772e9 · outbound

This paper cites Data release program.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics Data release program

Reference 57

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T17:16:10.560189Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation bc1c2e98-df1f-4366-92f5-02d12ecd179c · outbound

This paper cites M., and Ma, T.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics M., and Ma, T

Reference 58

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T17:16:10.349929Z

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No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 549446ed-68c3-468c-be40-792917e452c1 · outbound

This paper cites Cellplm: pre-training of cell language model beyond single cells.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics Cellplm: pre-training of cell language model beyond single cells

Reference 59

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T17:16:10.133603Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation d78f238f-ad5d-4c06-a9b0-e782edbbc944 · outbound

This paper cites Perteval-scfm: Benchmarking single-cell foundation models for perturbation effect prediction.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics Perteval-scfm: Benchmarking single-cell foundation models for perturbation effect prediction

Reference 60

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T17:16:09.885958Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation f48a9ece-9829-46ec-a910-57459598a9c7 · outbound

This paper cites G., Lee, H.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics G., Lee, H

Reference 61

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T17:16:09.695662Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 31252224-120d-4bff-8335-52aaee65e99a · outbound

This paper cites A spatiotemporal atlas of cholestatic injury and repair in mice.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics A spatiotemporal atlas of cholestatic injury and repair in mice

Reference 62

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T17:16:09.494127Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 42de0393-7299-492f-913e-e94a62246e01 · outbound

This paper cites Z., Al-Eryani, G., Roden, D.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics Z., Al-Eryani, G., Roden, D

Reference 63

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T17:16:09.330446Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 2abce172-fb2d-42b6-8f90-a8c6be37d823 · outbound

This paper cites How Powerful are Graph Neural Networks?.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics How Powerful are Graph Neural Networks?

Reference 64

Resolution: unresolved; no resolver link, observed 2026-08-06T17:16:03.596788Z

Source-reported events for the cited work

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Observation 3e718a53-ddcb-4594-b860-32dc90a02dd4 · outbound

This paper cites Stomicsdb: a comprehensive database for spatial transcriptomics data sharing, analysis and visualization.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics Stomicsdb: a comprehensive database for spatial transcriptomics data sharing, analysis and visualization

Reference 65

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T17:16:09.179643Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation e77007d3-f5a7-4c42-98b8-17159357f093 · outbound

This paper cites Scbert as a large-scale pretrained deep language model for cell type annotation of single-cell rna-seq data.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics Scbert as a large-scale pretrained deep language model for cell type annotation of single-cell rna-seq data

Reference 66

Resolution: unresolved; no resolver link, observed 2026-08-06T17:16:03.809827Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 6159204b-3be7-4f1b-9da5-3b1b69e3d9e7 · outbound

This paper cites Genecompass: deciphering universal gene regulatory mechanisms with a knowledge-informed cross-species foundation model.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics Genecompass: deciphering universal gene regulatory mechanisms with a knowledge-informed cross-species foundation model

Reference 67

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T17:16:08.692353Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 589b290e-f6b3-4f54-9d9d-8bd0f261ce05 · outbound

This paper cites Do transformers really perform badly for graph representation? Advances in neural information processing systems, 34: 0 28877--28888, 2021.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics Do transformers really perform badly for graph representation? Advances in neural information processing systems, 34: 0 28877--28888, 2021

Reference 68

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T17:16:08.467722Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 42166691-314b-4ae5-b937-6f2aeb37a415 · outbound

This paper cites Hierarchical graph representation learning with differentiable pooling.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics Hierarchical graph representation learning with differentiable pooling

Reference 69

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T17:16:07.856927Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation b036ea5a-16a5-4928-9188-81ccb0a0f83f · outbound

This paper cites Cell-ontology guided transcriptome foundation model.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics Cell-ontology guided transcriptome foundation model

Reference 70

Resolution: verified exact; local_arxiv, observed 2026-08-06T17:16:05.402913Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 214d2e2c-5b88-4996-b352-4ee2297cca25 · outbound

This paper cites Q., and Yao, J.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics Q., and Yao, J

Reference 71

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T17:16:07.199386Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 3d1c2c22-24cc-4a5d-bb06-06dd619cb7e2 · outbound

This paper cites Large-Scale Cell Representation Learning via Divide-and-Conquer Contrastive Learning.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics Large-Scale Cell Representation Learning via Divide-and-Conquer Contrastive Learning

Reference 72

Resolution: verified exact; local_arxiv, observed 2026-08-06T17:16:05.230251Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 454e1df6-c323-4bee-badd-ef7babd9c35f · outbound

This paper cites LangCell: Language-Cell Pre-training for Cell Identity Understanding.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics LangCell: Language-Cell Pre-training for Cell Identity Understanding

Reference 73

Resolution: unresolved; no resolver link, observed 2026-08-06T17:16:04.372770Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation f0e508e2-7332-41f1-be80-8bee12c0dace · outbound

This paper cites Multi-scale protein language model for unified molecular modeling.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics Multi-scale protein language model for unified molecular modeling

Reference 74

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T17:16:06.945516Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation fe94bee8-6395-402b-b877-4c76a3d585e2 · outbound

This paper cites Causal-iqa: Towards the generalization of image quality assessment based on causal inference.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics Causal-iqa: Towards the generalization of image quality assessment based on causal inference

Reference 75

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T17:16:06.708985Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation d744b4be-9215-473c-a3ba-1d0c016dfa98 · outbound

This paper cites Ctd-inpainting: Towards the coherence of text-driven inpainting with blended diffusion.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics Ctd-inpainting: Towards the coherence of text-driven inpainting with blended diffusion

Reference 76

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T17:16:06.573238Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 9f46456f-4291-4d70-8fc1-f3a049ae2e12 · outbound

This paper cites Uni-mol: A universal 3d molecular representation learning framework.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics Uni-mol: A universal 3d molecular representation learning framework

Reference 77

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T17:16:06.443073Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation aaa35399-b9fe-48e8-ada8-c67aae5c143f · outbound

This paper cites Pianno: a probabilistic framework automating semantic annotation for spatial transcriptomics.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics Pianno: a probabilistic framework automating semantic annotation for spatial transcriptomics

Reference 78

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T17:16:06.269922Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 77156377-1904-423d-819f-17552b2f74dc · outbound

This paper cites Comparative analysis of single-cell rna sequencing methods.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics Comparative analysis of single-cell rna sequencing methods

Reference 79

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T17:16:06.114350Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation c991d603-74f7-4d74-b076-3fa04bceaf9b · outbound

This paper cites an unresolved cited work.

SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics Unresolved cited work

Reference 80

Resolution: unresolved; raw_fallback, observed 2026-08-06T17:16:05.876353Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

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