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Paper Citation Record · LEDGER

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics

As of 10 August 2026, this Paper Citation Record lists 63 of 63 outbound references and 0 inbound Pith citation observations for arXiv:2508.01490.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2508.01490 v2

Coverage vector

measured 63 of 63 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-06T05:36:44.790811Z

measured 63 of 63 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-10T06:31:04.303077+00:00

measured 0 of 0 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: cited_works

Reference resolution

63 of 63 outbound references displayed

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External citation measurements

No source-named external measurement is stored.

Outbound references

Observation 8883c63d-1436-4d51-9777-bb4bb21f1e04 · outbound

This paper cites write newline.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics write newline

Reference 1

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source=arxiv_source observed=2026-08-06T05:36:44.268902Z digest=sha256:cea2364145e3ff1e8451070e39fe202dd9f22ae69637affef16c60be476d1593

Observation c86df5f1-d321-407a-9289-99bc26212aaf · outbound

This paper cites Atlas: A novel pathology foundation model by mayo clinic, charit\'e, and aignostics, 2025.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Atlas: A novel pathology foundation model by mayo clinic, charit\'e, and aignostics, 2025

Reference 2

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Observation f08e93f5-00cd-4a3c-adee-1f5fe71454a9 · outbound

This paper cites Song, Luca Weishaupt, Ahrong Kim, Guillaume Jaume, Drew F.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Song, Luca Weishaupt, Ahrong Kim, Guillaume Jaume, Drew F

Reference 3

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verified fuzzy
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Source-reported events for the cited work

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Observation 835cadb6-501c-44ed-95b4-6ef2dc510b89 · outbound

This paper cites Super-resolved spatial transcriptomics by deep data fusion.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Super-resolved spatial transcriptomics by deep data fusion

Reference 4

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.293924Z digest=sha256:ffd382fbc8eba8ff83b2fceb0a67b37d3a071f68181ad9e324b99be8485b1372

Observation 373eb5d3-e885-4b0d-8063-02e80f9fecc1 · outbound

This paper cites Schoenfeld, and Chad Vanderbilt.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Schoenfeld, and Chad Vanderbilt

Reference 5

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Source-reported events for the cited work

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Observation 98361def-b61c-4c8a-aa5f-ebba7d774d03 · outbound

This paper cites Emerging properties in self-supervised vision transformers.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Emerging properties in self-supervised vision transformers

Reference 6

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Source-reported events for the cited work

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source=arxiv_source observed=2026-08-06T05:36:44.307997Z digest=sha256:d488c12ec378bf11d57c68201836caf1c3eae306f7c558019b87a8b5b6b0f10d

Observation ade58408-0ca1-4569-9099-863d70eecb08 · outbound

This paper cites Towards a general-purpose foundation model for computational pathology.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Towards a general-purpose foundation model for computational pathology

Reference 7

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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.316146Z digest=sha256:2b5208f0a372c260c8c4c0482b9cc9b482b27146363ba53cd761a65c2c33a27b

Observation c6118fe4-b249-41f6-8859-89ca07ba3782 · outbound

This paper cites Tran, Yiwei Xiao, Shengyu Li, Vrutant V.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Tran, Yiwei Xiao, Shengyu Li, Vrutant V

Reference 8

Resolution
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

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Observation dab9ed30-2d17-4ba1-970b-171eaa559d2d · outbound

This paper cites scgpt: toward building a foundation model for single-cell multi-omics using generative ai.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics scgpt: toward building a foundation model for single-cell multi-omics using generative ai

Reference 9

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verified fuzzy
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Source-reported events for the cited work

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Observation 355e35e8-06de-4abf-b8ff-9ad2993ac5fe · outbound

This paper cites Contrastive vision-language pre-training with limited resources.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Contrastive vision-language pre-training with limited resources

Reference 10

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verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.341185Z digest=sha256:828367353ef2139f0293a936e5258bb2fa3e317e1b6ef1835f29627ce7ee259b

Observation c1c06886-3e69-4fd1-b56a-1017a27e0519 · outbound

This paper cites Geneformer: Learned gene compression using transformer-based context modeling.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Geneformer: Learned gene compression using transformer-based context modeling

Reference 11

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Source-reported events for the cited work

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source=arxiv_source observed=2026-08-06T05:36:44.349639Z digest=sha256:94f6185bf76e4396ba97265fa3e6318da438990f8d10c65eed129fea2e7edf33

Observation 79fcc4d1-e299-4878-90e4-c7aff154a3b4 · outbound

This paper cites Navia, Nicolo Fusi, Srivatsan Raghavan, Peter S.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Navia, Nicolo Fusi, Srivatsan Raghavan, Peter S

Reference 12

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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.355720Z digest=sha256:1ac490e6863dd443aa4f4bd66b760ca4fb21e46d52a93ed416a2bf42d70bf723

Observation 76b49cbd-f726-4b1e-8943-dd22083913f5 · outbound

This paper cites Multimodal Whole Slide Foundation Model for Pathology.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Multimodal Whole Slide Foundation Model for Pathology

Reference 13

Resolution
unresolved
no resolver link, observed 2026-08-06T05:36:44.362947Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-06T05:36:44.362947Z digest=sha256:45447a82a7a07b2b37a97749b3a1136435ca43381ba0be78885674bd3e6c935f

Observation 4f86d1e8-aeb3-4353-bdb5-44934f51eb84 · outbound

This paper cites Distilling foundation models for robust and efficient models in digital pathology, 2025.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Distilling foundation models for robust and efficient models in digital pathology, 2025

Reference 14

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.376424Z digest=sha256:bdb8dfe73736b1c51328051d04fa93b66da7ddd939a7899a8c69910954a04ec3

Observation 1d49d71f-d141-4545-a122-8807f4373c8e · outbound

This paper cites Large-scale foundation model on single-cell transcriptomics.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Large-scale foundation model on single-cell transcriptomics

Reference 15

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.383956Z digest=sha256:cfc2ad7f8b50bc0283802d0fc387c4ac75d359f5fd123296ab00729b2ac43b53

Observation 82e52781-712a-42d7-a6e9-ed53ec66861d · outbound

This paper cites Integrating spatial gene expression and breast tumour morphology via deep learning.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Integrating spatial gene expression and breast tumour morphology via deep learning

Reference 16

Resolution
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Source-reported events for the cited work

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source=arxiv_source observed=2026-08-06T05:36:44.392080Z digest=sha256:874dd5483cf00c2f7b3cc9516eb768e97b02ed4b1bf90fc1132e16d75d60ddb2

Observation e1832eda-3308-4c7e-b08f-d624b393638a · outbound

This paper cites Hu, Yelong Shen, Phillip Wallis, Zeyuan Allen-Zhu, Yuanzhi Li, Shean Wang, Lu Wang, and Weizhu Chen.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Hu, Yelong Shen, Phillip Wallis, Zeyuan Allen-Zhu, Yuanzhi Li, Shean Wang, Lu Wang, and Weizhu Chen

Reference 17

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Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-06T05:36:44.406115Z digest=sha256:59d4c98a68880fd7b6affc6ba41aeab4281257062b31ae3b3c78357cad64c8ba

Observation 35ca6e0e-d330-4046-9ec5-4e4fb5ad11e0 · outbound

This paper cites Montine, and James Zou.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Montine, and James Zou

Reference 18

Resolution
verified fuzzy
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Source-reported events for the cited work

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Observation 6bc787c9-8d10-48b0-9d38-2f843c64a592 · outbound

This paper cites Hyland, Shruthi Bannur, Kenza Bouzid, Daniel C.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Hyland, Shruthi Bannur, Kenza Bouzid, Daniel C

Reference 19

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Source-reported events for the cited work

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Observation b0494301-10c0-4e8b-b18f-b8d90c3f6430 · outbound

This paper cites Quilt-1M: One Million Image-Text Pairs for Histopathology.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Quilt-1M: One Million Image-Text Pairs for Histopathology

Reference 20

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Source-reported events for the cited work

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source=arxiv_source observed=2026-08-06T05:36:44.423965Z digest=sha256:cd37da71c6da8b484d3f7fe4a8621770629e8ee2b23df3a0c0e7cff26a278d54

Observation e448e946-6b4b-4716-9adf-7958c6ff9052 · outbound

This paper cites Openclip, 2021.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Openclip, 2021

Reference 21

Resolution
unresolved
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Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-06T05:36:44.444965Z digest=sha256:0e9aebb03cf4551d1285835c790067e18ae37bcd25b2c159a1761d1e14a5aef4

Observation decec8b0-703c-4032-a157-fc491129b4cf · outbound

This paper cites Hest-1k: A dataset for spatial transcriptomics and histology image analysis.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Hest-1k: A dataset for spatial transcriptomics and histology image analysis

Reference 22

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.453738Z digest=sha256:13e9f35d0b8b453022ac184acf8d88edeaf4310073a05fd1614d7b0a2b812d17

Observation 948bd05c-89bc-4fe2-8146-dd5185a0e5da · outbound

This paper cites Chen, Drew F.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Chen, Drew F

Reference 23

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

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Observation 5bf60a15-eeb7-4fda-b5e9-3a9c67bde109 · outbound

This paper cites Modeling dense multimodal interactions between biological pathways and histology for survival prediction, 2024 c.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Modeling dense multimodal interactions between biological pathways and histology for survival prediction, 2024 c

Reference 24

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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.464088Z digest=sha256:e4c923ff0a0931a62be9abd327bab0fdaacf4ec83446441c7d8ea93fb562721a

Observation fca72e1c-8069-4fcd-a1bb-57dec35e16e8 · outbound

This paper cites Song, Richard J.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Song, Richard J

Reference 25

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

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Observation 27d52d13-3c00-403a-8236-263b3f30f025 · outbound

This paper cites o lscher, Tri Q. Nguyen, Jesper Kers, Roman D. B \.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics o lscher, Tri Q. Nguyen, Jesper Kers, Roman D. B \

Reference 26

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

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Observation ed64d291-8637-4f6a-afc9-1bda7d485580 · outbound

This paper cites Pathomclip: Connecting tumor histology with spatial gene expression via locally enhanced contrastive learning of pathology and single-cell foundation model.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Pathomclip: Connecting tumor histology with spatial gene expression via locally enhanced contrastive learning of pathology and single-cell foundation model

Reference 27

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:46.038419Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.482918Z digest=sha256:3ecc643c564102b8432fa4e07f81127da8bc49b79348ae5e74539c8af2b3cc51

Observation a9b4dc2a-7b53-4e62-ac84-8ea830d3c296 · outbound

This paper cites An integrated tcga pan-cancer clinical data resource to drive high-quality survival outcome analytics.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics An integrated tcga pan-cancer clinical data resource to drive high-quality survival outcome analytics

Reference 28

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:46.008843Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.489460Z digest=sha256:a5c448e2ca490fb0b95443e0a79c1615584b56d5831cb7b286f39c697d23f804

Observation 42bdd5a2-a38c-43a1-b58b-325d3dbc5e20 · outbound

This paper cites Deep generative modeling for single-cell transcriptomics.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Deep generative modeling for single-cell transcriptomics

Reference 29

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.971803Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.504207Z digest=sha256:9e1303a5b0522375622db5952b8dfba04935faa84f0dde428f074e2ea6dd8c83

Observation 17dbd77b-341b-409f-897a-7202cedfb179 · outbound

This paper cites A visual-language foundation model for computational pathology.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics A visual-language foundation model for computational pathology

Reference 30

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.945232Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.514318Z digest=sha256:29241d69c1518b63720436143f3d8ca33b51d9da190d24e2540d692a60710e7c

Observation def5f0a1-a7b8-424d-9296-b4e7c67a5b91 · outbound

This paper cites A multimodal generative ai copilot for human pathology.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics A multimodal generative ai copilot for human pathology

Reference 31

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.925374Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.522135Z digest=sha256:88733a6f1ac71e911392fdc59a3752a27d0ab82610fa9fab934fc421579a01bb

Observation 13379a2c-8a83-4280-9844-37a064ab5c08 · outbound

This paper cites Benchmarking atlas-level data integration in single-cell genomics.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Benchmarking atlas-level data integration in single-cell genomics

Reference 32

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.906187Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.529930Z digest=sha256:6d933eca237ad81316d61c7dc059501ec0b4d00724a918d75a4f7791f50d6321

Observation 08b46de9-7ab7-43f4-904c-19cc95c78975 · outbound

This paper cites Pathbench: A comprehensive comparison benchmark for pathology foundation models towards precision oncology, 2025.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Pathbench: A comprehensive comparison benchmark for pathology foundation models towards precision oncology, 2025

Reference 33

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.880737Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.534338Z digest=sha256:66038f933791d4de7417cc65cb424856c71a5da4b60a1e52cedbd8062a1809a5

Observation afc72521-1ec8-4292-90ec-578300f3dbd9 · outbound

This paper cites Yamauchi, Isaac Virshup, Elyas Heidari, Tim Treis, Wouter-Michiel Vierdag, Marcella Toth, Sonja Stockhaus, Rahul B.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Yamauchi, Isaac Virshup, Elyas Heidari, Tim Treis, Wouter-Michiel Vierdag, Marcella Toth, Sonja Stockhaus, Rahul B

Reference 34

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.841908Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.543086Z digest=sha256:b7f615d35901f2a03bf33abe801b370d0fc33a10ce75a8940ff6d331c836545c

Observation 8c381126-409f-44d2-be0e-224d4b673c19 · outbound

This paper cites Benchmarking histopathology foundation models in a multi-center dataset for skin cancer subtyping, 2025.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Benchmarking histopathology foundation models in a multi-center dataset for skin cancer subtyping, 2025

Reference 35

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.801937Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.554062Z digest=sha256:f1e8eaeefdbe5f5db29e5e2f084ad3b6ceea89a73e00803e5d07ccd8ca25f969

Observation cfb05ed4-65ea-4923-8782-25c631603013 · outbound

This paper cites Unsupervised deep disentangled representation of single-cell omics.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Unsupervised deep disentangled representation of single-cell omics

Reference 36

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.782551Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.568981Z digest=sha256:1ee4f6fa4cbfc6d465fb57d322a4fccd00ed196d8f446ccfabe51183c0956fc5

Observation f620debc-5cde-49d2-b13e-fad1b85a3446 · outbound

This paper cites DINOv2: Learning Robust Visual Features without Supervision.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics DINOv2: Learning Robust Visual Features without Supervision

Reference 37

Resolution
unresolved
no resolver link, observed 2026-08-06T05:36:44.578753Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-06T05:36:44.578753Z digest=sha256:9e51cacf46586777620f5ad7f9fb3474f7c9cd20b42e7f78f4dac24ff4bee174

Observation 197a3e7c-3cdd-451a-bdcd-b51f2c593f3a · outbound

This paper cites Spatial components of molecular tissue biology.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Spatial components of molecular tissue biology

Reference 38

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.756419Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.585048Z digest=sha256:c615436f007b2918fc1194826e0a0f1f3c586af55ce965ea9aebd5e03c5f74bb

Observation 0420772a-fb2f-42d3-b55d-a5887fd0608a · outbound

This paper cites Moving closer towards a comprehensive view of tumor biology and microarchitecture using spatial transcriptomics.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Moving closer towards a comprehensive view of tumor biology and microarchitecture using spatial transcriptomics

Reference 39

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.712740Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.598566Z digest=sha256:74df2d3b317ed384953be8613e44636a6a479396bee48ba41f30782aff2711ef

Observation fa24f5de-68ba-4cd8-8faf-4ad39970c2ae · outbound

This paper cites Learning transferable visual models from natural language supervision.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Learning transferable visual models from natural language supervision

Reference 40

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.691220Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.606099Z digest=sha256:4b10be3d107abbd57b8c825f05084c56156848d76c7d408f128b3743b87b192c

Observation b1a43759-34a1-4230-a3c8-41e2cfc11e79 · outbound

This paper cites Exploring tissue architecture using spatial transcriptomics.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Exploring tissue architecture using spatial transcriptomics

Reference 41

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.654361Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.614182Z digest=sha256:659477d3c4c3842946d4860be190ebff3bae8b8952dc37b12585d85eda472981

Observation b1b41bd8-6c26-4a13-9b9f-36ee374d49a0 · outbound

This paper cites Universal cell embeddings: A foundation model for cell biology.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Universal cell embeddings: A foundation model for cell biology

Reference 42

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.621776Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.622143Z digest=sha256:a853b03e8c9960ac214dde1265fcd5dcf406537d45a140ff089f011f875b8d6e

Observation 6e3eda38-b1f6-4bee-aa16-191eeecd938c · outbound

This paper cites H-optimus-0, 2024.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics H-optimus-0, 2024

Reference 43

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.588421Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.628196Z digest=sha256:0413c64f65c8a2400b637e0dffd702a934a9f1118f2cc12d0b1d54a5a2b11324

Observation 0c549adb-b4e4-4adf-a2f7-0012f673170d · outbound

This paper cites Nicheformer: a foundation model for single-cell and spatial omics.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Nicheformer: a foundation model for single-cell and spatial omics

Reference 44

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.565290Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.636405Z digest=sha256:39e0ea7aa3a4d8d2576d25d30d3ab4a3c99891db6fc5b23412407bd5152c9311

Observation ceaf244e-8a0a-4113-9fb8-207cb641b399 · outbound

This paper cites A deep learning model to predict RNA -seq expression of tumours from whole slide images.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics A deep learning model to predict RNA -seq expression of tumours from whole slide images

Reference 45

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.525544Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.648396Z digest=sha256:3ad310af474e8de8f1f282bd0ce30e487d1515e63710446fc06e1815d3339239

Observation 46434532-6a60-4252-9133-f820db22e174 · outbound

This paper cites Kunz, Juan A.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Kunz, Juan A

Reference 46

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.499598Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.654588Z digest=sha256:31141269d1210f592b0b434842caf1d4bb3afd978e867184dd253c3726a9016b

Observation b379101e-d767-473d-8722-9853f4236cf0 · outbound

This paper cites Generating highly accurate pathology reports from gigapixel whole slide images with histogpt.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Generating highly accurate pathology reports from gigapixel whole slide images with histogpt

Reference 47

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.473111Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.663364Z digest=sha256:b683dac150de58b16501f54be77878cf4c749cc77b48caa552dbcd1f70198426

Observation 72a9f0c3-9235-426a-b903-bdce313c127e · outbound

This paper cites Molecular-driven Foundation Model for Oncologic Pathology.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Molecular-driven Foundation Model for Oncologic Pathology

Reference 48

Resolution
unresolved
no resolver link, observed 2026-08-06T05:36:44.672000Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-06T05:36:44.672000Z digest=sha256:19bc668f28696c88987283b35e44ec8742967e22f3ff379ba75bb05ac56ff2d0

Observation 3aeb2f53-fc19-4df6-af9d-1085d4f69985 · outbound

This paper cites Williams, Nicholas M.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Williams, Nicholas M

Reference 49

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.442798Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.680988Z digest=sha256:4fc6554b74f1192e3426ec999710d46d392f70f16e23f80509f66bfb31f4cb54

Observation 62e78b30-8f09-48dc-8792-03cfa8ef02f4 · outbound

This paper cites A foundation model for clinical-grade computational pathology and rare cancers detection.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics A foundation model for clinical-grade computational pathology and rare cancers detection

Reference 50

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.407465Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.694231Z digest=sha256:9072ecd4d67e72e936e65b2a56d04c253fc80053f47914d555708cc44dbe0039

Observation 73c735b4-5f0c-413e-ba06-d9b4c92e74e8 · outbound

This paper cites Transformer-based biomarker prediction from colorectal cancer histology: A large-scale multicentric study.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Transformer-based biomarker prediction from colorectal cancer histology: A large-scale multicentric study

Reference 51

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.388233Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.708865Z digest=sha256:852e785522ce123230c061ab5a501308d72cc62adc9e2631c716db8e213ff525

Observation 67dba3d3-51f5-4aa6-868b-6ed71f963fcf · outbound

This paper cites scgpt-spatial: Continual pretraining of single-cell foundation model for spatial transcriptomics.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics scgpt-spatial: Continual pretraining of single-cell foundation model for spatial transcriptomics

Reference 52

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.357598Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.717324Z digest=sha256:ed970cb2f7f2babd6c8489f08685789798fdc5fba344ee7c15421f160a052b07

Observation 5aaee62b-90e1-4128-be23-1ca9226b9a1a · outbound

This paper cites Transformer-based unsupervised contrastive learning for histopathological image classification.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Transformer-based unsupervised contrastive learning for histopathological image classification

Reference 53

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.331480Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.722255Z digest=sha256:8526cef663f17d3aef82e5482a1292b4ea4c3e0e974ed7dd37cb3fb7141517ab

Observation 51784aec-d918-4f1f-9dff-b541066a08f8 · outbound

This paper cites Retccl: Clustering-guided contrastive learning for whole-slide image retrieval.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Retccl: Clustering-guided contrastive learning for whole-slide image retrieval

Reference 54

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.299644Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.726993Z digest=sha256:fc45b90771abe549a18fbfa9906825d8985316926788b7108dbb6ca3ac44e81d

Observation 73493bd8-664e-4887-b5a9-7c9e27800012 · outbound

This paper cites The cancer genome atlas pan-cancer analysis project.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics The cancer genome atlas pan-cancer analysis project

Reference 55

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.265815Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.733017Z digest=sha256:16a4714dfdb3916eef140d8713d609773baf3434db31ca4673e843e0de92c16d

Observation 56ac51e5-c367-4fad-9247-1e3bd9ce3283 · outbound

This paper cites SCANPY : large-scale single-cell gene expression data analysis.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics SCANPY : large-scale single-cell gene expression data analysis

Reference 56

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.224778Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.738522Z digest=sha256:951d67ccac8bea80f7e77385785bc5d21edd131170d56accf847c4cf7408a4e1

Observation 1af7e9ea-b883-4084-a3a0-293b03c59085 · outbound

This paper cites Nirschl, Joel Neal, Maximilian Diehn, Sen Yang, and Ruijiang Li.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Nirschl, Joel Neal, Maximilian Diehn, Sen Yang, and Ruijiang Li

Reference 57

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.203141Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.744253Z digest=sha256:5b599f28020e27d363a62e39888a33ec86fd4922125a4ccd20072fd898d02b79

Observation e119abec-4ad6-4f2a-90be-12ff760d85f6 · outbound

This paper cites Spatially resolved gene expression prediction from histology images via bi-modal contrastive learning.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Spatially resolved gene expression prediction from histology images via bi-modal contrastive learning

Reference 58

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.169549Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.755846Z digest=sha256:20fa8736ffc920b510228a2709a4c118daae3887297a63867bad8fa172ca3dd2

Observation 7b24b661-cf71-4e48-b559-7c652b4b7a10 · outbound

This paper cites A whole-slide foundation model for digital pathology from real-world data.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics A whole-slide foundation model for digital pathology from real-world data

Reference 59

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.125753Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.761720Z digest=sha256:549dc555de63d578946ee5ad5c2b71cb1ebd3ba6b0f2a017fadd30b05bdb700b

Observation 9b26c7d2-ff59-488c-b0bf-69492cb58693 · outbound

This paper cites Sigmoid loss for language image pre-training, 2023.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Sigmoid loss for language image pre-training, 2023

Reference 60

Resolution
unresolved
no resolver link, observed 2026-08-06T05:36:44.767357Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-06T05:36:44.767357Z digest=sha256:3c02a1507d532a9ae017d7a0d337a809d3b0536ea8f91ecc359cae1ababb2ceb

Observation c2bbf966-49f8-4b5f-aee3-ebd3d39e6b4e · outbound

This paper cites Accelerating data processing and benchmarking of ai models for pathology, 2025.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Accelerating data processing and benchmarking of ai models for pathology, 2025

Reference 61

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.089791Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.775234Z digest=sha256:01a6b25aefe01c99193bf76fe647b8772d5ddb5000473ae4128ec1055a187737

Observation 8a7e388f-ab7d-46aa-835a-ef8dbac8f23f · outbound

This paper cites Inferring super-resolution tissue architecture by integrating spatial transcriptomics with histology.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Inferring super-resolution tissue architecture by integrating spatial transcriptomics with histology

Reference 62

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.063340Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.784657Z digest=sha256:d37572c33e101a6643c9dd10754d882e15441534d441c03ab5651efff1cf53a5

Observation 3e47b16e-2e61-4b7d-afaf-3b0f9add296b · outbound

This paper cites Conrad, Emily J.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Conrad, Emily J

Reference 63

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.028296Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.790811Z digest=sha256:39798df6755a783184a7e19ee56b8d8a5e266b94eee451e606ffe9b09b7ae40a

Pith citing papers

No inbound Pith citation observations are available.