Particle-based simulation of non-elementary bimolecular kinetics | Paper Citation Record

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This paper cites Reaching biological timescales with all-atom molecu- lar dynamics simulations.

Particle-based simulation of non-elementary bimolecular kinetics Reaching biological timescales with all-atom molecu- lar dynamics simulations

Reference 1

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This paper cites Whole-cell simulation: a grand challenge of the 21st century.

Particle-based simulation of non-elementary bimolecular kinetics Whole-cell simulation: a grand challenge of the 21st century

Reference 2

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This paper cites A Grand Challenge for Computing: Towards Full Reactive Modeling of A Multi- Cellular Animal.

Particle-based simulation of non-elementary bimolecular kinetics A Grand Challenge for Computing: Towards Full Reactive Modeling of A Multi- Cellular Animal

Reference 3

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This paper cites A Turing-like test for biological modeling.

Particle-based simulation of non-elementary bimolecular kinetics A Turing-like test for biological modeling

Reference 4

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This paper cites A whole-cell computational model predicts phenotype from genotype.

Particle-based simulation of non-elementary bimolecular kinetics A whole-cell computational model predicts phenotype from genotype

Reference 6

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Particle-based simulation of non-elementary bimolecular kinetics The Minimal Gene Complement of Mycoplasma genitalium

Reference 7

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This paper cites Simultaneous cross-evaluation of heterogeneous E. coli datasets via mechanistic simulation.

Particle-based simulation of non-elementary bimolecular kinetics Simultaneous cross-evaluation of heterogeneous E. coli datasets via mechanistic simulation

Reference 8

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This paper cites The E. coli Whole-Cell Modeling Project.

Particle-based simulation of non-elementary bimolecular kinetics The E. coli Whole-Cell Modeling Project

Reference 9

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This paper cites An expanded whole-cell model of E. coli links cellular physiology with mechanisms of growth rate control.

Particle-based simulation of non-elementary bimolecular kinetics An expanded whole-cell model of E. coli links cellular physiology with mechanisms of growth rate control

Reference 10

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This paper cites Comprehensive understanding of Saccharomyces cerevisiae phenotypes with whole- cell model WM_S288C.

Particle-based simulation of non-elementary bimolecular kinetics Comprehensive understanding of Saccharomyces cerevisiae phenotypes with whole- cell model WM_S288C

Reference 11

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This paper cites Understanding complex signaling networks through models and metaphors.

Particle-based simulation of non-elementary bimolecular kinetics Understanding complex signaling networks through models and metaphors

Reference 12

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This paper cites Understanding molecular signaling cascades in neural disease using multi-resolution models.

Particle-based simulation of non-elementary bimolecular kinetics Understanding molecular signaling cascades in neural disease using multi-resolution models

Reference 13

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Observation 7aebdb47-a1c0-4016-8f16-817b656eb4b9 · outbound

This paper cites Rates and Durations.

Particle-based simulation of non-elementary bimolecular kinetics Rates and Durations

Reference 14

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This paper cites Multi-scalecomputationalmodellinginbiologyandphysiology.

Particle-based simulation of non-elementary bimolecular kinetics Multi-scalecomputationalmodellinginbiologyandphysiology

Reference 15

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This paper cites Multi-scale modelling and simulation in systems biology.

Particle-based simulation of non-elementary bimolecular kinetics Multi-scale modelling and simulation in systems biology

Reference 16

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This paper cites Multiscale Computational Models of Complex Biological Systems.

Particle-based simulation of non-elementary bimolecular kinetics Multiscale Computational Models of Complex Biological Systems

Reference 17

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Observation 322ad1d3-a85c-4b98-a80f-efed89ac5497 · outbound

This paper cites What is flux balance analysis?.

Particle-based simulation of non-elementary bimolecular kinetics What is flux balance analysis?

Reference 18

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Observation b2c7db30-2f7b-42a3-9ce9-ea17e7698fa9 · outbound

This paper cites Classic and contemporary approaches to modeling biochemical reactions.

Particle-based simulation of non-elementary bimolecular kinetics Classic and contemporary approaches to modeling biochemical reactions

Reference 19

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This paper cites ChapterXIV:FLUCTUATIONSINCONTINUOUSSYSTEMS.

Particle-based simulation of non-elementary bimolecular kinetics ChapterXIV:FLUCTUATIONSINCONTINUOUSSYSTEMS

Reference 20

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Observation cc37f64a-1fc0-44dc-82b5-8672e6070d7c · outbound

This paper cites Molecular discreteness in reaction-diffusion systems yields steady states not seen in the continuum limit.

Particle-based simulation of non-elementary bimolecular kinetics Molecular discreteness in reaction-diffusion systems yields steady states not seen in the continuum limit

Reference 21

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This paper cites Nature, nurture, or chance: stochastic gene expres- sion and its consequences.

Particle-based simulation of non-elementary bimolecular kinetics Nature, nurture, or chance: stochastic gene expres- sion and its consequences

Reference 22

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Observation 49eaf59b-5e89-457f-9a7e-eda4a934e163 · outbound

This paper cites A Stochastic Single-Molecule Event Triggers Phenotype Switching of a Bacterial Cell.

Particle-based simulation of non-elementary bimolecular kinetics A Stochastic Single-Molecule Event Triggers Phenotype Switching of a Bacterial Cell

Reference 23

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Particle-based simulation of non-elementary bimolecular kinetics Noise Contributions in an Inducible Genetic Switch: A Whole-Cell Simulation Study

Reference 24

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This paper cites Stochasticity and Cell Fate.

Particle-based simulation of non-elementary bimolecular kinetics Stochasticity and Cell Fate

Reference 25

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Particle-based simulation of non-elementary bimolecular kinetics Stochastic processes in cell biology

Reference 26

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This paper cites What is the total number of protein molecules per cell volume? A call to rethink some published values.

Particle-based simulation of non-elementary bimolecular kinetics What is the total number of protein molecules per cell volume? A call to rethink some published values

Reference 27

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This paper cites Protein abundance profiling of the Escherichia coli cytosol.

Particle-based simulation of non-elementary bimolecular kinetics Protein abundance profiling of the Escherichia coli cytosol

Reference 28

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This paper cites Stochastic modelling of reaction–diffusion processes: algorithms for bimolecular reactions.

Particle-based simulation of non-elementary bimolecular kinetics Stochastic modelling of reaction–diffusion processes: algorithms for bimolecular reactions

Reference 29

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This paper cites The stochastic nature of biochemical networks.

Particle-based simulation of non-elementary bimolecular kinetics The stochastic nature of biochemical networks

Reference 30

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Observation a680212e-c9ef-48d9-b0a4-2be62ec9dc49 · outbound

This paper cites Molecular dynamics simulations: advances and applications.

Particle-based simulation of non-elementary bimolecular kinetics Molecular dynamics simulations: advances and applications

Reference 31

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This paper cites Accelerators for Classical Molecular Dynamics Simulations of Biomolecules.

Particle-based simulation of non-elementary bimolecular kinetics Accelerators for Classical Molecular Dynamics Simulations of Biomolecules

Reference 32

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This paper cites Extending the limit of molecular dynamics with ab initio accuracy to 10 billion atoms.

Particle-based simulation of non-elementary bimolecular kinetics Extending the limit of molecular dynamics with ab initio accuracy to 10 billion atoms

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Particle-based simulation of non-elementary bimolecular kinetics #COVIDisAirborne: AI-enabled multiscale computational microscopy of delta SARS-CoV-2 in a respiratory aerosol

Reference 34

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This paper cites Molecular dynamics simulation for all.

Particle-based simulation of non-elementary bimolecular kinetics Molecular dynamics simulation for all

Reference 35

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Particle-based simulation of non-elementary bimolecular kinetics Molecular dynamics simulation of an entire cell

Reference 36

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This paper cites Coarse-grained Representation of Protein Flexibility. Foundations, Suc- cesses, and Shortcomings.

Particle-based simulation of non-elementary bimolecular kinetics Coarse-grained Representation of Protein Flexibility. Foundations, Suc- cesses, and Shortcomings

Reference 37

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Particle-based simulation of non-elementary bimolecular kinetics Design and synthesis of a minimal bacterial genome

Reference 38

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This paper cites Multi-scale models of whole cells: progress and challenges.

Particle-based simulation of non-elementary bimolecular kinetics Multi-scale models of whole cells: progress and challenges

Reference 39

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Observation 53d23826-e5dc-4ecd-be7d-5a8e57e0af0c · outbound

This paper cites A general method for numerically simulating the stochastic time evolution of coupled chemical reactions.

Particle-based simulation of non-elementary bimolecular kinetics A general method for numerically simulating the stochastic time evolution of coupled chemical reactions

Reference 40

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Particle-based simulation of non-elementary bimolecular kinetics Exact stochastic simulation of coupled chemical reactions

Reference 41

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Observation c95a2308-213b-44a1-97e7-ee7f6f191d10 · outbound

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Particle-based simulation of non-elementary bimolecular kinetics Simulating mesoscopic reaction-diffusion systems using the Gillespie algorithm

Reference 42

Resolution: verified exact; doi, observed 2026-08-06T11:02:32.681963Z

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Observation 6efdd062-d176-47fb-93f6-ea4aaf504c51 · outbound

This paper cites The multinomial simulation algo- rithm for discrete stochastic simulation of reaction-diffusion systems.

Particle-based simulation of non-elementary bimolecular kinetics The multinomial simulation algo- rithm for discrete stochastic simulation of reaction-diffusion systems

Reference 43

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Observation 4043bae4-f768-4ad4-9c2b-6d17abd1b8fe · outbound

This paper cites The Reaction-Diffusion Master Equation as an Asymptotic Approximation of Diffusion to a Small Target.

Particle-based simulation of non-elementary bimolecular kinetics The Reaction-Diffusion Master Equation as an Asymptotic Approximation of Diffusion to a Small Target

Reference 44

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Particle-based simulation of non-elementary bimolecular kinetics Reaction-diffusion master equation in the microscopic limit

Reference 45

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This paper cites Spatial Stochastic Intracellular Kinetics: A Review of Mod- elling Approaches.

Particle-based simulation of non-elementary bimolecular kinetics Spatial Stochastic Intracellular Kinetics: A Review of Mod- elling Approaches

Reference 46

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This paper cites Versuch einer mathematischen Theorie der Koagulationskinetik kolloider Lösungen.

Particle-based simulation of non-elementary bimolecular kinetics Versuch einer mathematischen Theorie der Koagulationskinetik kolloider Lösungen

Reference 47

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Particle-based simulation of non-elementary bimolecular kinetics Unresolved cited work

Reference 48

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Observation 4d2ae40d-2ea6-4e1d-ac12-e2261a4e9871 · outbound

This paper cites Miniature end-plate current rise times 100 microseconds from improved dual recordings can be modelled with passive acetylcholine diffusion form a synaptic vesicle.

Particle-based simulation of non-elementary bimolecular kinetics Miniature end-plate current rise times 100 microseconds from improved dual recordings can be modelled with passive acetylcholine diffusion form a synaptic vesicle

Reference 49

Resolution: unresolved; no resolver link, observed 2026-08-06T11:02:31.066990Z

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Observation d0306f1c-b697-4fd5-9da7-e7575572ae40 · outbound

This paper cites Monte Carlo methods for simulating realistic synaptic microphysiology using MCell.

Particle-based simulation of non-elementary bimolecular kinetics Monte Carlo methods for simulating realistic synaptic microphysiology using MCell

Reference 50

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This paper cites Simulating Biochemical Networks at the Particle Level and in Time and Space: Green’s Function Reaction Dynamics.

Particle-based simulation of non-elementary bimolecular kinetics Simulating Biochemical Networks at the Particle Level and in Time and Space: Green’s Function Reaction Dynamics

Reference 51

Resolution: verified exact; doi, observed 2026-08-06T11:02:32.560194Z

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Particle-based simulation of non-elementary bimolecular kinetics Green’s-function reaction dynamics: A particle- based approach for simulating biochemical networks in time and space

Reference 52

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This paper cites Spatio-temporal correlations can drastically change the response of a MAPK pathway.

Particle-based simulation of non-elementary bimolecular kinetics Spatio-temporal correlations can drastically change the response of a MAPK pathway

Reference 53

Resolution: unresolved; no resolver link, observed 2026-08-06T11:02:31.106732Z

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Observation a50cf721-2c97-4fcc-9bb5-e95f28cf619b · outbound

This paper cites eGFRD in all dimensions.

Particle-based simulation of non-elementary bimolecular kinetics eGFRD in all dimensions

Reference 54

Resolution: verified exact; doi, observed 2026-08-06T11:02:32.514620Z

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Observation be999a1a-4031-46cc-9a92-aef00f45f7d7 · outbound

This paper cites Stochastic simulation of chemical reactions with spatial resolution and single molecule detail.

Particle-based simulation of non-elementary bimolecular kinetics Stochastic simulation of chemical reactions with spatial resolution and single molecule detail

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This paper cites Simulation tools for particle-based reaction-diffusion dynamics in continuous space.

Particle-based simulation of non-elementary bimolecular kinetics Simulation tools for particle-based reaction-diffusion dynamics in continuous space

Reference 56

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Observation 2d625480-4add-4cf8-ac70-d1e7e5f8fd2e · outbound

This paper cites Diffusion-controlled reaction rates.

Particle-based simulation of non-elementary bimolecular kinetics Diffusion-controlled reaction rates

Reference 57

Resolution: unresolved; no resolver link, observed 2026-08-06T11:02:31.136356Z

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Observation 22c09cd6-32ab-4ddc-9dc1-2b83f97f7e18 · outbound

This paper cites Stochastic theory of diffusion-controlled reaction.

Particle-based simulation of non-elementary bimolecular kinetics Stochastic theory of diffusion-controlled reaction

Reference 58

Resolution: verified exact; doi, observed 2026-08-06T11:02:32.495128Z

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Observation 04d4d709-c6b3-44b8-a25c-b836977b7412 · outbound

This paper cites Molecular biology of the cell.

Particle-based simulation of non-elementary bimolecular kinetics Molecular biology of the cell

Reference 59

Resolution: unresolved; no resolver link, observed 2026-08-06T11:02:31.151388Z

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Unavailable: canonical work link unavailable.

Observation d01605fb-bdaf-482b-a97d-25f9387dd637 · outbound

This paper cites Methods of model reduc- tion for large-scale biological systems: a survey of current methods and trends.

Particle-based simulation of non-elementary bimolecular kinetics Methods of model reduc- tion for large-scale biological systems: a survey of current methods and trends

Reference 60

Resolution: unresolved; no resolver link, observed 2026-08-06T11:02:31.157799Z

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Unavailable: canonical work link unavailable.

Observation 5b77e8f4-e952-4917-b32f-cff54f1c193c · outbound

This paper cites Minimal model of spiky oscillations in NF-κB signaling.

Particle-based simulation of non-elementary bimolecular kinetics Minimal model of spiky oscillations in NF-κB signaling

Reference 61

Resolution: verified exact; doi, observed 2026-08-06T11:02:32.469409Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

Observation 9ce18e61-e866-4773-9b84-9d77d62aae57 · outbound

This paper cites Modeling oscillatory control in NF- κB, p53 and Wnt signaling.

Particle-based simulation of non-elementary bimolecular kinetics Modeling oscillatory control in NF- κB, p53 and Wnt signaling

Reference 62

Resolution: verified exact; doi, observed 2026-08-06T11:02:32.443031Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

Observation 06f32727-675f-4196-9c5f-57383c9ad5ad · outbound

This paper cites Minimal oscillating subnetwork in the Huang-Ferrell model of the MAPK cascade.

Particle-based simulation of non-elementary bimolecular kinetics Minimal oscillating subnetwork in the Huang-Ferrell model of the MAPK cascade

Reference 63

Resolution: verified exact; doi, observed 2026-08-06T11:02:32.421636Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

Observation 39f110a3-e86c-45e2-b3fd-7918958ddd9b · outbound

This paper cites A Minimal Model of Metabolism-Based Chemotaxis.

Particle-based simulation of non-elementary bimolecular kinetics A Minimal Model of Metabolism-Based Chemotaxis

Reference 64

Resolution: verified exact; doi, observed 2026-08-06T11:02:32.400630Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

Observation d9356dbc-3593-4361-aed1-17753e7314d1 · outbound

This paper cites The Moderately Efficient Enzyme: Evolutionary and Physicochemical Trends Shaping Enzyme Parameters.

Particle-based simulation of non-elementary bimolecular kinetics The Moderately Efficient Enzyme: Evolutionary and Physicochemical Trends Shaping Enzyme Parameters

Reference 65

Resolution: unresolved; no resolver link, observed 2026-08-06T11:02:31.190141Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation cb47d672-7541-4191-8295-2c4c4dabad50 · outbound

This paper cites Machine learning applied to enzyme turnover numbers reveals protein structural correlates and improves metabolic models.

Particle-based simulation of non-elementary bimolecular kinetics Machine learning applied to enzyme turnover numbers reveals protein structural correlates and improves metabolic models

Reference 66

Resolution: unresolved; no resolver link, observed 2026-08-06T11:02:31.198505Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 46177275-ad0b-4f91-bdf2-d815a819cefc · outbound

This paper cites Die kinetik der invertinwirkung.

Particle-based simulation of non-elementary bimolecular kinetics Die kinetik der invertinwirkung

Reference 67

Resolution: unresolved; no resolver link, observed 2026-08-06T11:02:31.206431Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation eef23922-6b12-4923-b471-71c2039e2162 · outbound

This paper cites Lois générales de l’action des diastases.

Particle-based simulation of non-elementary bimolecular kinetics Lois générales de l’action des diastases

Reference 68

Resolution: unresolved; no resolver link, observed 2026-08-06T11:02:31.212823Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 8d0ac5a9-7303-444f-bd71-10bbbff93fca · outbound

This paper cites Chapter 1 - Basic principles of chemical kinetics.

Particle-based simulation of non-elementary bimolecular kinetics Chapter 1 - Basic principles of chemical kinetics

Reference 69

Resolution: verified exact; doi, observed 2026-08-06T11:02:32.373368Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

Observation f9ddc818-f576-4519-bdc1-650141e40ac0 · outbound

This paper cites A Note on the Kinetics of Enzyme Action.

Particle-based simulation of non-elementary bimolecular kinetics A Note on the Kinetics of Enzyme Action

Reference 70

Resolution: verified exact; doi, observed 2026-08-06T11:02:32.351438Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

Observation edad4a89-c6db-4397-87ee-5852b2b614a3 · outbound

This paper cites The Quasi-Steady-State Assumption: A Case Study in Per- turbation.

Particle-based simulation of non-elementary bimolecular kinetics The Quasi-Steady-State Assumption: A Case Study in Per- turbation

Reference 71

Resolution: unresolved; no resolver link, observed 2026-08-06T11:02:31.236683Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation c817c03e-8343-4868-954a-17e7190cd09e · outbound

This paper cites On the mathematical status of the pseudo-steady state hypothesis of biochemical kinetics.

Particle-based simulation of non-elementary bimolecular kinetics On the mathematical status of the pseudo-steady state hypothesis of biochemical kinetics

Reference 72

Resolution: verified exact; doi, observed 2026-08-06T11:02:32.331368Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

Observation be94a769-444e-4dc6-9c73-01b807cac4e5 · outbound

This paper cites Enzyme kinetics simulation at the scale of individual parti- cles.

Particle-based simulation of non-elementary bimolecular kinetics Enzyme kinetics simulation at the scale of individual parti- cles

Reference 73

Resolution: verified exact; doi, observed 2026-08-06T11:02:32.306877Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

Observation 7b0fafeb-9fed-49c1-92b7-6b7494383216 · outbound

This paper cites Breakdown of the reaction-diffusion master equation with nonelementary rates.

Particle-based simulation of non-elementary bimolecular kinetics Breakdown of the reaction-diffusion master equation with nonelementary rates

Reference 74

Resolution: verified exact; doi, observed 2026-08-06T11:02:32.286974Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

Observation 80763739-a4e2-41f6-8736-5a490f45a7ce · outbound

This paper cites Accuracy of the Michaelis–Menten ap- proximation when analysing effects of molecular noise.

Particle-based simulation of non-elementary bimolecular kinetics Accuracy of the Michaelis–Menten ap- proximation when analysing effects of molecular noise

Reference 75

Resolution: verified exact; raw_fallback, observed 2026-08-06T11:02:33.359500Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

Observation 9a14abee-6b35-4796-b8e2-fbb342e4bfc6 · outbound

This paper cites A model for circadian oscillations in theDrosophila period protein (PER).

Particle-based simulation of non-elementary bimolecular kinetics A model for circadian oscillations in theDrosophila period protein (PER)

Reference 76

Resolution: unresolved; no resolver link, observed 2026-08-06T11:02:31.272779Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation d8007252-7a87-4e30-8d17-e2b06eaf2b76 · outbound

This paper cites Smoluchowski reaction kinetics for reactions of any order.

Particle-based simulation of non-elementary bimolecular kinetics Smoluchowski reaction kinetics for reactions of any order

Reference 77

Resolution: unresolved; no resolver link, observed 2026-08-06T11:02:31.282809Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 5b9a8b1a-370e-4eb6-87b6-4b0d0e2a12b8 · outbound

This paper cites Accurate stochastic simulation of nonlinear reactions between closest particles.

Particle-based simulation of non-elementary bimolecular kinetics Accurate stochastic simulation of nonlinear reactions between closest particles

Reference 78

Resolution: verified exact; local_arxiv, observed 2026-08-06T11:02:32.265003Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

Observation 02485412-789d-4216-bd33-a89e8c0a1c24 · outbound

This paper cites Stochastic simulation of chemical kinetics.

Particle-based simulation of non-elementary bimolecular kinetics Stochastic simulation of chemical kinetics

Reference 79

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T11:02:34.029217Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

Observation 194cba88-9ff9-48f7-9401-1f74f4c13b8c · outbound

This paper cites General Principles in Random Variate Generation.

Particle-based simulation of non-elementary bimolecular kinetics General Principles in Random Variate Generation

Reference 80

Resolution: malformed identifier; no resolver link, observed 2026-08-06T11:02:31.313068Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 611950b6-68bf-46e7-94cf-400631921b67 · outbound

This paper cites Deterministic Versus Stochastic Models for Circadian Rhythms.

Particle-based simulation of non-elementary bimolecular kinetics Deterministic Versus Stochastic Models for Circadian Rhythms

Reference 81

Resolution: verified exact; doi, observed 2026-08-06T11:02:32.216331Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

Observation f61cc80e-0939-4a27-9848-24be9edc85bf · outbound

This paper cites A practical guide to stochastic simulations of reaction-diffusion processes.

Particle-based simulation of non-elementary bimolecular kinetics A practical guide to stochastic simulations of reaction-diffusion processes

Reference 82

Resolution: unresolved; no resolver link, observed 2026-08-06T11:02:31.327451Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 6a4439b0-35ae-4be0-9f61-06b3e3faef85 · outbound

This paper cites Circadian rhythms of locomotor activity in Drosophila.

Particle-based simulation of non-elementary bimolecular kinetics Circadian rhythms of locomotor activity in Drosophila

Reference 83

Resolution: verified exact; doi, observed 2026-08-06T11:02:32.169123Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

Observation dbf08a69-b457-4fdf-be37-5f88e6b6d3de · outbound

This paper cites CircadianOrganizationofBehaviorandPhysiologyinDrosophila.

Particle-based simulation of non-elementary bimolecular kinetics CircadianOrganizationofBehaviorandPhysiologyinDrosophila

Reference 84

Resolution: verified exact; doi, observed 2026-08-06T11:02:32.143145Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

Observation d10c1adb-cda1-46df-bb75-a328f295df51 · outbound

This paper cites Setting the clock – by nature: Circadian rhythm in the fruitfly Drosophila melanogaster.

Particle-based simulation of non-elementary bimolecular kinetics Setting the clock – by nature: Circadian rhythm in the fruitfly Drosophila melanogaster

Reference 85

Resolution: verified exact; doi, observed 2026-08-06T11:02:32.110121Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

Observation 8b7b5dfb-a32a-4260-9163-d37f9a20662a · outbound

This paper cites Neuronal wiring diagram of an adult brain.

Particle-based simulation of non-elementary bimolecular kinetics Neuronal wiring diagram of an adult brain

Reference 86

Resolution: unresolved; no resolver link, observed 2026-08-06T11:02:31.360580Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 1c189f3b-d72e-4643-a46e-072bf89c9a14 · outbound

This paper cites Whole-brain annotation and multi-connectome cell typing of Drosophila.

Particle-based simulation of non-elementary bimolecular kinetics Whole-brain annotation and multi-connectome cell typing of Drosophila

Reference 87

Resolution: unresolved; no resolver link, observed 2026-08-06T11:02:31.365963Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 3684fd77-44e3-46e8-b20c-6b2ae9e7b73b · outbound

This paper cites RNA-seq analysis of Drosophila clock and non-clock neurons reveals neuron-specific cycling and novel candidate neuropeptides.

Particle-based simulation of non-elementary bimolecular kinetics RNA-seq analysis of Drosophila clock and non-clock neurons reveals neuron-specific cycling and novel candidate neuropeptides

Reference 88

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T11:02:33.999470Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

Observation 25a60ad8-8f69-4c59-ad3f-a513d2882d51 · outbound

This paper cites The discovery of circadian clock genes and the use of similar strategies to discover unknown genes underlying complex behaviors and brain disorders.

Particle-based simulation of non-elementary bimolecular kinetics The discovery of circadian clock genes and the use of similar strategies to discover unknown genes underlying complex behaviors and brain disorders

Reference 89

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T11:02:33.958187Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

Observation e4aecbff-d3cb-426b-b0a6-ed2c4eee0468 · outbound

This paper cites an unresolved cited work.

Particle-based simulation of non-elementary bimolecular kinetics Unresolved cited work

Reference 90

Resolution: verified exact; doi, observed 2026-08-06T11:02:32.052553Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

Observation 2f326259-c6be-4dc8-a19f-49a115007bce · outbound

This paper cites Light-Dependent Interactions between the Drosophila Circadian Clock Factors Cryptochrome, Jetlag, and Timeless.

Particle-based simulation of non-elementary bimolecular kinetics Light-Dependent Interactions between the Drosophila Circadian Clock Factors Cryptochrome, Jetlag, and Timeless

Reference 91

Resolution: verified exact; doi, observed 2026-08-06T11:02:31.995318Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

Observation bf8e06c7-7b89-4bd6-affd-6090dab3ca2b · outbound

This paper cites Regulation of the Drosophila Protein Timeless Suggests a Mechanism for Resetting the Circadian Clock by Light.

Particle-based simulation of non-elementary bimolecular kinetics Regulation of the Drosophila Protein Timeless Suggests a Mechanism for Resetting the Circadian Clock by Light

Reference 92

Resolution: verified exact; doi, observed 2026-08-06T11:02:32.023748Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

Observation 1ab93eb4-c28e-4715-8533-1d727f339aad · outbound

This paper cites TheDrosophila Clock Genedouble-time Encodes a Protein Closely Related to Human Casein Kinase Iϵ.

Particle-based simulation of non-elementary bimolecular kinetics TheDrosophila Clock Genedouble-time Encodes a Protein Closely Related to Human Casein Kinase Iϵ

Reference 93

Resolution: malformed identifier; doi_truncated, observed 2026-08-06T11:02:31.945746Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

Observation b5f5a2a6-73b4-41ab-9c88-efeff9555e9e · outbound

This paper cites double-time Is a Novel Drosophila Clock Gene that Regulates PERIOD Protein Accumulation.

Particle-based simulation of non-elementary bimolecular kinetics double-time Is a Novel Drosophila Clock Gene that Regulates PERIOD Protein Accumulation

Reference 94

Resolution: verified exact; doi, observed 2026-08-06T11:02:31.966710Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

Observation 231c2a37-6930-4922-a66c-e8c8ef7cf545 · outbound

This paper cites A role for casein kinase 2α in the Drosophila circadian clock.

Particle-based simulation of non-elementary bimolecular kinetics A role for casein kinase 2α in the Drosophila circadian clock

Reference 95

Resolution: verified exact; doi, observed 2026-08-06T11:02:31.888249Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

Observation 9c229f39-75a8-480c-8514-90df417689fb · outbound

This paper cites Posttranslational Regulation of Drosophila PERIOD Protein by Protein Phosphatase 2A.

Particle-based simulation of non-elementary bimolecular kinetics Posttranslational Regulation of Drosophila PERIOD Protein by Protein Phosphatase 2A

Reference 96

Resolution: verified exact; doi, observed 2026-08-06T11:02:31.920998Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

Observation a93a1c4a-6e7d-4fdd-96ca-5347c5afd3ca · outbound

This paper cites In Vivo Circadian Function of Casein Ki- nase 2 Phosphorylation Sites in Drosophila PERIOD.

Particle-based simulation of non-elementary bimolecular kinetics In Vivo Circadian Function of Casein Ki- nase 2 Phosphorylation Sites in Drosophila PERIOD

Reference 97

Resolution: verified exact; doi, observed 2026-08-06T11:02:31.830051Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

Observation d03a1eee-e7ca-4b5c-ab42-ac06b6681ed1 · outbound

This paper cites A role for CK2 in the Drosophila circadian oscillator.

Particle-based simulation of non-elementary bimolecular kinetics A role for CK2 in the Drosophila circadian oscillator

Reference 98

Resolution: verified exact; doi, observed 2026-08-06T11:02:31.859540Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

Observation 921ef8c0-d595-4af6-8b42-49e4a935a5a7 · outbound

This paper cites A Model for Circadian Rhythms in Drosophila Incorporating the Formation of a Complex between the PER and TIM Proteins.

Particle-based simulation of non-elementary bimolecular kinetics A Model for Circadian Rhythms in Drosophila Incorporating the Formation of a Complex between the PER and TIM Proteins

Reference 99

Resolution: verified exact; doi, observed 2026-08-06T11:02:31.797445Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

Observation 893b90c6-033a-4f7e-89ab-9d97bab136b5 · outbound

This paper cites A Hierarchical Phosphorylation Cascade That Regulates the Timing of PERIOD Nuclear Entry Reveals Novel Roles for Proline-Directed Kinases and GSK-3β/SGG in Circadian Clocks.

Particle-based simulation of non-elementary bimolecular kinetics A Hierarchical Phosphorylation Cascade That Regulates the Timing of PERIOD Nuclear Entry Reveals Novel Roles for Proline-Directed Kinases and GSK-3β/SGG in Circadian Clocks

Reference 100

Resolution: malformed identifier; raw_fallback, observed 2026-08-06T11:02:33.929660Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

Observation 57f724c2-a270-4272-a0bf-46a8d71dd943 · outbound

This paper cites Minimal model for signal-induced Ca2+ oscillations and for their frequency encoding through protein phosphorylation.

Particle-based simulation of non-elementary bimolecular kinetics Minimal model for signal-induced Ca2+ oscillations and for their frequency encoding through protein phosphorylation

Reference 101

Resolution: verified exact; doi, observed 2026-08-06T11:02:31.749716Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

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