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Source: paper_references, paper_reference_links, observed 2026-08-04T00:06:01.425444Z
Paper Citation Record · LEDGER
As of 6 August 2026, this Paper Citation Record lists 69 of 69 outbound references and 2 inbound Pith citation observations for arXiv:2511.02986.
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Pith citing papers itemized under the disclosed page cap.
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A source-named dated measurement, never combined with another source.
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69 of 69 outbound references displayed
External citation measurements
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Observation 679f98ae-ee24-4063-8280-493627cdf7a6 · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models TheHuman CellAtlas: fromvisiontoreality.Nature,550(7677):451–453,2017
Reference 1
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Observation f16cdf54-ada8-4bf8-9a20-50de6bde91cb · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models Thescverseprojectprovidesacomputationalecosystem forsingle-cellomicsdataanalysis.Naturebiotechnology,41(5):604–606,2023
Reference 2
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Observation 9252533e-8145-4ee2-b255-b0945180c5a0 · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models Single-celltranscriptional diversityisahallmarkofdevelopmentalpotential.Science,367(6476):405,2020
Reference 3
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Observation 21285a49-5a65-4d53-972a-8173ec3d54a1 · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models Single-cellrnasequencing-basedcomputationalanalysistodescribedisease heterogeneity.FrontiersinGenetics,10:629,2019
Reference 4
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Observation faa9626e-0e45-4209-b90c-5af93425eb0a · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models Predicting cel- lularresponsestoperturbationacrossdiversecontextswithSTATE.bioRxiv,pages2025–06,2025
Reference 5
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Observation 7c738f92-ff94-4c89-a9a6-aa78d9d9871f · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models Modellingcellularperturbationswiththesparseadditive mechanismshiftvariationalautoencoder
Reference 6
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Observation 0285d703-c2c2-4d0b-869f-c1bd384a9919 · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models Tahoe-100m: Agiga-scalesingle-cell perturbationatlasforcontext-dependentgenefunctionandcellularmodeling.BioRxiv,pages2025–02, 2025
Reference 7
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Observation ba35dadb-92c3-45cb-b84d-343c06844b37 · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models Eleven grandchallengesinsingle-celldatascience.Genomebiology,21:1–35,2020
Reference 8
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Observation dab61fb6-dcf7-4080-b66f-85206364f91c · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models Bench- markingatlas-leveldataintegrationinsingle-cellgenomics.Naturemethods,19(1):41–50,2022
Reference 9
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Observation 08ccb885-f00b-419a-be1b-71d74f8182c4 · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models Single-cellgenomics: approaches andutilityinimmunology.Trendsinimmunology,38(2):140–149,2017
Reference 10
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Observation fdc7e65c-9b07-40db-9694-f71559dd307e · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models SpringerInternationalPublishing,2024
Reference 11
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Observation 5e4aa226-0188-4b45-b55b-0e0aeea888a5 · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models Deep generative modelingforsingle-celltranscriptomics.Naturemethods,15(12):1053–1058,2018
Reference 12
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Observation 8c627a74-63ae-427c-bd78-79643e866682 · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models Predictingcellular responses to complex perturbations in high-throughput screens.Molecular systems biology, 19(6): e11517,2023
Reference 13
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Observation e9307aa8-08d2-4efb-a490-33323b25aec4 · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models Predictingcellmorphologicalresponses toperturbationsusinggenerativemodeling.NatureCommunications,16(1):505,2025
Reference 14
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Observation dd87fa2b-27f8-4af7-8bc3-7a2e2c42266d · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models Deepgenerativemodelingoftranscriptionaldynamicsforrnavelocity analysisinsinglecells.NatureMethods,21(1):50–59,2024
Reference 15
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Observation 85dcef1e-d304-4f0f-a32c-f9edfe00ca2d · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models Theis, Aaron Streets, Michael I
Reference 16
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Observation 7586ace5-7727-4aee-8278-372694a78778 · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models Realisticinsilicogenerationandaugmentationofsingle-cellrna-seqdata usinggenerativeadversarialnetworks.Naturecommunications,11(1):166,2020
Reference 17
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Observation 483be370-a1ef-4856-a6a9-07cd6a025688 · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models Unresolved cited work
Reference 18
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Observation 9848210a-c659-430f-a668-68b0491e8b82 · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models scdiffusion: conditional generation of high-qualitysingle-celldatausingdiffusionmodel.Bioinformatics,40(9),2024
Reference 19
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Observation c379730b-03b2-4755-a3a2-e5a6bd192336 · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models Multi-modalandmulti-attributegenerationofsinglecellswithcfgen
Reference 20
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Observation 052cf73b-c6d4-4b3c-8f46-c1cd855590e4 · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models Sit: Exploringflowanddiffusion-basedgenerativemodelswithscalableinterpolanttransformers
Reference 21
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Observation af285ea5-8097-4072-9092-03d98f581e37 · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models Scalablediffusionmodelswithtransformers
Reference 22
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Observation 411baed6-a8ea-4d55-bc48-4cbc75503796 · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models Auto-encodingvariational {Bayes}
Reference 23
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Observation 63794e86-936c-4fce-9278-80f14598f5c1 · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models Stochastic backpropagation and approximateinferenceindeepgenerativemodels
Reference 24
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Observation a7d5a27f-6e07-482b-81d8-75d0461a27d6 · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models Setvae: Learninghierarchicalcomposition forgenerativemodelingofset-structureddata
Reference 25
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Observation b64530dd-623f-4dd4-9782-0cdd6ca71cc6 · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models Geometric Deep Learning: Grids, Groups, Graphs, Geodesics, and Gauges
Reference 26
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Observation b243432a-1741-4138-9028-5cd85822a9bc · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models Deepsets.Advancesinneuralinformationprocessingsystems,30,2017
Reference 27
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Observation 3c588a23-ca86-4f70-8455-b0d6b678c8ea · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models On permutation-invariant neural networks
Reference 28
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Observation 990ddaad-276e-426a-b2e1-1a6ef576745a · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models Attention-baseddeepmultipleinstancelearning
Reference 29
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Observation 6aa4a925-0d7a-47fe-ba3e-7e57159e3012 · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models Advances in set function learning: a survey of techniques and applications.ACMComputingSurveys,57(7):1–37,2025
Reference 30
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Observation 3d694aa6-7fb7-4801-8b72-ec095d0a4eae · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models Set transformer: Aframeworkforattention-basedpermutation-invariantneuralnetworks
Reference 31
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Observation 10655f54-5558-46f5-b026-814d4123ab79 · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models High- resolutionimagesynthesiswithlatentdiffusionmodels
Reference 32
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Observation 5483f346-f0cf-4873-8e39-7ed39f48e304 · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models All-atomDiffusionTransformers: Unifiedgenerativemodellingof moleculesandmaterials
Reference 33
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Observation c93117fa-c978-4f3d-ae73-196277fc649e · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models LaM-SLidE:LatentSpaceModelingofSpatialDynamicalSystemsviaLinkedEntities.arXiv preprintarXiv:2502.12128,2025
Reference 34
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Observation a7096bf2-bac1-410c-a5dc-16ece52be86c · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models La-Proteina: Atomistic Protein Generation via Partially Latent Flow Matching
Reference 35
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Observation 749efb0f-0b83-4b01-9ec8-dbed816ea4dc · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models Realisticinsilicogenerationandaugmentationofsingle-cellRNA-seqdatausing generativeadversarialnetworks.Nat.Commun.,11(1):166,January2020
Reference 36
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Observation 28df5ff7-9170-4ae4-9d42-c5a5fee8bf10 · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models Single-Cell RNA-seq Synthesis with Latent Diffusion Model
Reference 37
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Observation 6a6f6a1d-173e-46da-a606-ded9ec1fc163 · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models Predictingcellularresponsestocomplexperturbations inhigh-throughputscreens.MolecularSystemsBiology,19(6):e11517,2023
Reference 38
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Observation 37cdc3d5-001d-428c-b016-5594d6c615a0 · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models Squidiff: Predictingcellulardevelopmentandresponsesto perturbationsusingadiffusionmodel.bioRxiv,pages2024–11,2024
Reference 39
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Observation 48fbf580-bd45-4c32-b129-ec04f031e695 · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models CellFlow enables generative single-cell phenotype modelingwithflowmatching
Reference 40
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Observation e9882b87-48ee-4023-8461-0196a75a888f · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models Learningsingle-cellperturbationre- sponsesusingneuraloptimaltransport.NatureMethods,20(11):1759–1768,September2023.ISSN1548-
Reference 41
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Observation 65349426-acbc-461c-aad8-4eeddbe0c4af · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models PerceiverIO:AGeneral ArchitectureforStructuredInputs&Outputs
Reference 42
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Observation 152e5cfc-fdbd-438e-bfdd-9bee0d750c49 · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models Perceiver: Generalperceptionwithiterativeattention
Reference 43
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Observation 6ebeac95-c407-4a2a-8081-2f7e54991e9a · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models Equivariant priors for compressed sensing with unknown orientation
Reference 44
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Observation 95da7235-eaa6-419a-b9bb-4c773bac043c · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models Vae with a vampprior
Reference 45
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Observation df28f0c6-065a-43d9-a8b0-1e77efabf4b2 · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models Classifier-Free Diffusion Guidance
Reference 46
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Observation 0f1cef78-1b63-43b8-a49e-414ab6d1f32c · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models Flow Matching for Generative Modeling
Reference 47
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Observation a42c4a35-47ee-4436-bc0c-577d725cc5b7 · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models Improving and generalizing flow-based generative models with minibatch optimal transport
Reference 48
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Observation 4c2a1b98-fd7d-4f67-98dc-09ef7baea1a2 · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models beta-VAE: Learning basic visual concepts with a constrained variationalframework
Reference 49
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Observation ada2df7a-e1ae-401e-a163-831554a735d5 · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models https://www.parsebiosciences.com/ datasets/10-million-human-pbmcs-in-a-single-experiment/
Reference 50
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Observation 23edfeb3-15f7-4fba-ba3d-9a177e4659aa · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models Transcriptome-wide analysis of differential expressioninperturbationatlases.NatureGenetics,pages1–10,2025
Reference 51
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Observation 7904d8b4-450c-4afc-b4ce-83397d297e0e · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models scGPT: towardbuildingafoundationmodelforsingle-cellmulti-omicsusinggenerativeAI.Naturemethods, 21(8):1470–1480,2024
Reference 52
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Observation 729bd8f4-6bc8-4a8c-864d-6d4efb7c5a37 · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models Interstitial macrophages are a focus of viral takeover and inflammation in covid-19 initiation in human lung
Reference 53
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Observation 11afd5b8-713f-4979-a59b-35a709206931 · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models Tabulasapiensrevealstranscriptionfactor expression,senescenceeffects,andsex-specificfeaturesincelltypesfrom28humanorgansandtissues
Reference 54
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Observation 594f1e7d-71a4-4d66-bb92-1e6f682ec20b · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models A cross-speciesgenerativecellatlasacross1.5billionyearsofevolution: Thetranscriptformersingle-cell model.bioRxiv,pages2025–04,2025
Reference 55
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Observation 540d95a6-73b0-48d9-ade7-f4eec46a8362 · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models InNeurIPS 2024 Workshop on AI for New Drug Modalities.bioRxiv,2024
Reference 56
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Observation 6878c50b-f763-4727-b9ab-5fcb24adb978 · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models Transferlearningenables predictionsinnetworkbiology.Nature,618(7965):616–624,2023
Reference 57
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Observation 6708c96d-60c6-4410-98e1-04683910deb9 · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models Universal cell embeddings: A foundation model for cell biology.bioRxiv,pages2023–11,2023
Reference 58
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Observation 87a93b7c-7481-4da6-9961-e36ea450d624 · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models Set norm and equivariant skip connections: Puttingthedeepindeepsets
Reference 59
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Observation 1843b05e-02dc-4d50-be8e-1221b5d5320c · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models Attention is all you need.Advances in neural information processing systems,30,2017
Reference 60
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Observation 1d16572b-1759-4596-9573-3fa7a3087930 · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models WaveNet: A Generative Model for Raw Audio
Reference 61
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Observation 187b6fe9-f97e-4000-a5ed-653b63fd7b9a · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models Train for the worst, planforthebest: Understandingtokenorderinginmaskeddiffusions
Reference 62
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Observation cc49e36f-343a-42d1-a0e3-001537b40f6b · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models 𝜎-gpts: Anewapproachtoautoregressive models
Reference 63
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Observation fecd89c3-bd15-4362-bb69-2d6c1269751f · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models Denoising diffusion probabilistic models.Advancesin neuralinformationprocessingsystems,33:6840–6851,2020
Reference 64
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Observation c018cfd0-a684-47ea-b2ad-353dcec948a6 · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models Scalingupmaskeddiffusionmodelsontext
Reference 65
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Observation 46483766-1f5c-4404-be2e-d1654588f5eb · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models A kerneltwo-sampletest.Thejournalofmachinelearningresearch,13(1):723–773,2012
Reference 66
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Observation cd88daca-4783-4365-a239-a514348d6ccf · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models Anoteontheevaluationofgenerativemodels
Reference 67
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Observation 7198d9aa-34f1-4ab4-828f-2aa1654e3171 · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models CD4Naive+IL-9
Reference 68
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Observation 5a7ba4ac-4c39-439d-b39b-cccc9fee24c7 · outbound
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models URLhttp://dx.doi.org/10.1038/s41592-023-01969-x
Reference 7105
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Observation 15704614-f3c1-47ac-ba5a-fd511662c342 · inbound
PRiMeFlow: Capturing Complex Expression Heterogeneity in Perturbation Response Modelling Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models
Reference 12
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Observation 248bfd04-8be5-43ae-abe8-1f46aab27530 · inbound
PRiMeFlow: Capturing Complex Expression Heterogeneity in Perturbation Response Modelling Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models
Reference 12
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