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Paper Citation Record · LEDGER

Progressive Multi-Agent Reasoning for Biological Perturbation Prediction

As of 3 August 2026, this Paper Citation Record lists 17 of 17 outbound references and 2 inbound Pith citation observations for arXiv:2602.07408.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2602.07408 v2

Coverage vector

measured 17 of 17 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-05-16T06:45:57.682881Z

measured 19 of 19 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-03T06:30:56.289259+00:00

measured 2 of 2 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links, observed 2026-08-01T14:28:17.268201Z

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: cited_works

Reference resolution

17 of 17 outbound references displayed

  • verified exact1
  • verified fuzzy4
  • unresolved12
  • parse uncertain0
  • malformed identifier0
  • metadata mismatch0

External citation measurements

No source-named external measurement is stored.

Outbound references

Observation 4a8c828d-094f-48f8-98b5-b24257d49273 · outbound

This paper cites Neema, N., Mukherjee, S., Shah, S., Ramakrishnan, G., and Venkatesh, G.

Progressive Multi-Agent Reasoning for Biological Perturbation Prediction Neema, N., Mukherjee, S., Shah, S., Ramakrishnan, G., and Venkatesh, G

Reference 1

Resolution
verified exact
arxiv_id, observed 2026-05-16T06:47:27.979766Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-03T06:30:56.289259+00:00.

source=pdf_text observed=2026-05-16T06:45:57.682881Z digest=sha256:9f89f8c9ecaccff0f656050183f895f0139020e721a40b4aa9f00a7de2d75c70

Observation 361bb12e-b910-4e46-9e75-bcb09cbf0129 · outbound

This paper cites an unresolved cited work.

Progressive Multi-Agent Reasoning for Biological Perturbation Prediction Unresolved cited work

Reference 2

Resolution
unresolved
raw_fallback, observed 2026-05-16T06:47:28.568982Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-03T06:30:56.289259+00:00.

source=pdf_text observed=2026-05-16T06:45:57.682881Z digest=sha256:0fa15ae0c8048d8e9e5589db724dd613b6ef3070bdaa02eec0de6174a4100447

Observation 20c19d15-cece-4587-ab95-be875313cdb6 · outbound

This paper cites an unresolved cited work.

Progressive Multi-Agent Reasoning for Biological Perturbation Prediction Unresolved cited work

Reference 3

Resolution
unresolved
raw_fallback, observed 2026-05-16T06:47:28.573644Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-03T06:30:56.289259+00:00.

source=pdf_text observed=2026-05-16T06:45:57.682881Z digest=sha256:c854febb11850bcf7a08927f21bfd32730766a218ce684ff1291f62f7bf03cfe

Observation b18cfdd9-1e91-4657-ad61-c4019c4f9dfd · outbound

This paper cites USER PROMPT: Analyze context: Cell Line: {cell line}, Perturbation: {pertor moa}, Target Gene: {targetgene} Network agent You are a Systems Biology expert.

Progressive Multi-Agent Reasoning for Biological Perturbation Prediction USER PROMPT: Analyze context: Cell Line: {cell line}, Perturbation: {pertor moa}, Target Gene: {targetgene} Network agent You are a Systems Biology expert

Reference 4

Resolution
verified fuzzy
raw_fallback, observed 2026-05-16T06:47:28.571704Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-03T06:30:56.289259+00:00.

source=pdf_text observed=2026-05-16T06:45:57.682881Z digest=sha256:5066321fe6e346607f17ffae40da01593914d9b9e550b68a8def7dd257f3137d

Observation f656fd72-6720-4866-8d34-86910be9aa56 · outbound

This paper cites an unresolved cited work.

Progressive Multi-Agent Reasoning for Biological Perturbation Prediction Unresolved cited work

Reference 5

Resolution
unresolved
raw_fallback, observed 2026-05-16T06:47:28.576258Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-03T06:30:56.289259+00:00.

source=pdf_text observed=2026-05-16T06:45:57.682881Z digest=sha256:96c6efca0f9c3530147ace25c399ad0607f6b1a6ee1530453e5682bad1b428c3

Observation 2abd3e2f-cd45-4a85-8761-c27b65d6d4b9 · outbound

This paper cites an unresolved cited work.

Progressive Multi-Agent Reasoning for Biological Perturbation Prediction Unresolved cited work

Reference 6

Resolution
unresolved
raw_fallback, observed 2026-05-16T06:47:28.566692Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-03T06:30:56.289259+00:00.

source=pdf_text observed=2026-05-16T06:45:57.682881Z digest=sha256:2b656e1fc1137c477c0de0cc93a4e02c32beda943955c60bef7be8006a554f01

Observation 9bb644b4-3d09-4f12-8238-fcdd16f2c86e · outbound

This paper cites an unresolved cited work.

Progressive Multi-Agent Reasoning for Biological Perturbation Prediction Unresolved cited work

Reference 7

Resolution
unresolved
raw_fallback, observed 2026-05-16T06:47:28.537192Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-03T06:30:56.289259+00:00.

source=pdf_text observed=2026-05-16T06:45:57.682881Z digest=sha256:6721afeaf26c33a13338fa3df34dc03b8d7cab228eff8456bdedd9641946e26f

Observation 45918a8b-ebd3-4da3-916a-66ac8783e147 · outbound

This paper cites an unresolved cited work.

Progressive Multi-Agent Reasoning for Biological Perturbation Prediction Unresolved cited work

Reference 8

Resolution
unresolved
raw_fallback, observed 2026-05-16T06:47:28.544412Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-03T06:30:56.289259+00:00.

source=pdf_text observed=2026-05-16T06:45:57.682881Z digest=sha256:d48d00c3432b4f72e3ed1b404f13e96cb849e66c003a7804ba1cd01434ccf4c3

Observation 8c448d47-d9a4-483d-9a6a-1620a1499ad6 · outbound

This paper cites an unresolved cited work.

Progressive Multi-Agent Reasoning for Biological Perturbation Prediction Unresolved cited work

Reference 9

Resolution
unresolved
raw_fallback, observed 2026-05-16T06:47:28.564058Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-03T06:30:56.289259+00:00.

source=pdf_text observed=2026-05-16T06:45:57.682881Z digest=sha256:d527c15ca7e467279cc48af0d8f5f6becdebcaa0cc3460f7d9c56a15506e18d3

Observation 60b6e390-7e18-41e9-95ef-0c00366b5b83 · outbound

This paper cites - Using history direction as the primary or sole justification is NOT allowed.

Progressive Multi-Agent Reasoning for Biological Perturbation Prediction - Using history direction as the primary or sole justification is NOT allowed

Reference 10

Resolution
verified fuzzy
raw_fallback, observed 2026-05-16T06:47:28.558914Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-03T06:30:56.289259+00:00.

source=pdf_text observed=2026-05-16T06:45:57.682881Z digest=sha256:e710df6cfc7e4465b18f2cda182952616c225200c62d438627f76649508b73c3

Observation 9fdb7188-ae6e-46b2-a0fb-d36964951d78 · outbound

This paper cites an unresolved cited work.

Progressive Multi-Agent Reasoning for Biological Perturbation Prediction Unresolved cited work

Reference 11

Resolution
unresolved
raw_fallback, observed 2026-05-16T06:47:28.541900Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-03T06:30:56.289259+00:00.

source=pdf_text observed=2026-05-16T06:45:57.682881Z digest=sha256:07608778f6109d6ff8103489cc959a4d08c43ac181653992802c44f1762b1a53

Observation dbba9481-16d5-46f0-8617-afb589827199 · outbound

This paper cites an unresolved cited work.

Progressive Multi-Agent Reasoning for Biological Perturbation Prediction Unresolved cited work

Reference 12

Resolution
unresolved
raw_fallback, observed 2026-05-16T06:47:28.561625Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-03T06:30:56.289259+00:00.

source=pdf_text observed=2026-05-16T06:45:57.682881Z digest=sha256:b960b92d0ef9199cb72a5cedc350e52123d7380835131dcb58ae13f69e2faee7

Observation 10779fe0-1f40-4e84-984e-ce58a5519382 · outbound

This paper cites an unresolved cited work.

Progressive Multi-Agent Reasoning for Biological Perturbation Prediction Unresolved cited work

Reference 13

Resolution
unresolved
raw_fallback, observed 2026-05-16T06:47:28.546961Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-03T06:30:56.289259+00:00.

source=pdf_text observed=2026-05-16T06:45:57.682881Z digest=sha256:a1740403f40b5b934f6241257a8c2a3cb55d2fb13021c5504f30363673f62898

Observation 1a8c8a72-4c97-41de-8408-cbd8a0a8b0c8 · outbound

This paper cites - Do NOT judge biological correctness or the final answer.

Progressive Multi-Agent Reasoning for Biological Perturbation Prediction - Do NOT judge biological correctness or the final answer

Reference 14

Resolution
verified fuzzy
raw_fallback, observed 2026-05-16T06:47:28.555941Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-03T06:30:56.289259+00:00.

source=pdf_text observed=2026-05-16T06:45:57.682881Z digest=sha256:3bc8648a41e7da47b2c45243869081c0fe8a0f2bb7ae399a3f87da15b1e3d647

Observation 10a128f5-9485-41bb-b594-c32cf04f8c0b · outbound

This paper cites an unresolved cited work.

Progressive Multi-Agent Reasoning for Biological Perturbation Prediction Unresolved cited work

Reference 15

Resolution
unresolved
raw_fallback, observed 2026-05-16T06:47:28.539762Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-03T06:30:56.289259+00:00.

source=pdf_text observed=2026-05-16T06:45:57.682881Z digest=sha256:88ddf9fce0e67ca554018e6e33477f954ec658aed7c6810f750c48d4c779247c

Observation 7ed243b0-325c-405a-b369-0a47a3f89489 · outbound

This paper cites an unresolved cited work.

Progressive Multi-Agent Reasoning for Biological Perturbation Prediction Unresolved cited work

Reference 16

Resolution
unresolved
raw_fallback, observed 2026-05-16T06:47:28.549771Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-03T06:30:56.289259+00:00.

source=pdf_text observed=2026-05-16T06:45:57.682881Z digest=sha256:98bc5f33acda83ec8d860ad9802bcad88f0bab9d2fc1b0a33be96b954dde1724

Observation c265ea8d-fc16-43ea-96d5-83e39cee6437 · outbound

This paper cites - If ANY inconsistency is found, verdict MUST be ”problematic”.

Progressive Multi-Agent Reasoning for Biological Perturbation Prediction - If ANY inconsistency is found, verdict MUST be ”problematic”

Reference 17

Resolution
verified fuzzy
raw_fallback, observed 2026-05-16T06:47:28.552886Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-03T06:30:56.289259+00:00.

source=pdf_text observed=2026-05-16T06:45:57.682881Z digest=sha256:1ed002da362affcbe415a0dc5c5b242e9da10f7a894b4db8d811b26cccdbe4e7

Pith citing papers

Observation 8bb2365d-1194-4031-b5ae-1f45d0d598a2 · inbound

PertReason: A Knowledge-Grounded Benchmark and Framework for Cell-State-Conditioned Mechanistic Reasoning of Perturbation Effects cites this paper.

PertReason: A Knowledge-Grounded Benchmark and Framework for Cell-State-Conditioned Mechanistic Reasoning of Perturbation Effects Progressive Multi-Agent Reasoning for Biological Perturbation Prediction

Reference 14

Resolution
unresolved
no resolver link, observed 2026-08-01T14:28:17.268201Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-01T14:28:17.268201Z digest=sha256:4cd350650eea53585a11cfb3c0b8eee8d5a52b54b93867e8e89ed192034d3107

Observation f7c388a5-b657-4ce6-a3e3-5e4b15c43616 · inbound

Evaluating Agentic Bioinformatics through Function, Evidence, and Validation cites this paper.

Evaluating Agentic Bioinformatics through Function, Evidence, and Validation Progressive Multi-Agent Reasoning for Biological Perturbation Prediction

Reference 60

Resolution
unresolved
no resolver link, observed 2026-08-01T05:48:22.591794Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-01T05:48:22.591794Z digest=sha256:66419ea0614d99464736208a87ea6691a6f7e3e45658af62711b639fa710a23f