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Paper Citation Record · LEDGER

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators

As of 8 August 2026, this Paper Citation Record lists 64 of 64 outbound references and 1 inbound Pith citation observation for arXiv:2602.11216.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2602.11216 v2

Coverage vector

measured 64 of 64 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-03T01:06:05.356121Z

measured 65 of 65 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-08T06:32:00.761636+00:00

measured 1 of 1 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links, observed 2026-07-12T02:29:52.764344Z

measured 1 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: pith, observed 2026-08-05T02:28:24.338817Z

Reference resolution

64 of 64 outbound references displayed

  • verified exact6
  • verified fuzzy0
  • unresolved57
  • parse uncertain0
  • malformed identifier1
  • metadata mismatch0

External citation measurements

0
pith, observed 2026-08-05T02:28:24.338817Z

Outbound references

Observation fd260331-b7e6-4bdf-8cc3-ade8e14322a9 · outbound

This paper cites write newline.

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators write newline

Reference 1

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unresolved
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Unavailable: canonical work link unavailable.

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Observation 610d28eb-0153-4e9f-9188-c5dd4cd3b729 · outbound

This paper cites D., Doucet, A., Bronstein, M.

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators D., Doucet, A., Bronstein, M

Reference 2

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Observation e2b56bb9-076c-49cd-8946-f664f1869b86 · outbound

This paper cites an unresolved cited work.

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators Unresolved cited work

Reference 3

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unresolved
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Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-03T01:06:01.477585Z digest=sha256:99b54289a3df853119c4233532eea1845525afd4640b42a4eddada7b3d919f4c

Observation 0a76121d-0c47-4673-b334-cb99d4c6de42 · outbound

This paper cites Kinetic analysis of folding and unfolding the 56 amino acid igg-binding domain of streptococcal protein g.

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators Kinetic analysis of folding and unfolding the 56 amino acid igg-binding domain of streptococcal protein g

Reference 4

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no resolver link, observed 2026-08-03T01:06:01.500039Z

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Unavailable: canonical work link unavailable.

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Observation 5ff28f71-8122-4bc2-9a84-f87af7823dc4 · outbound

This paper cites Pytorch 2: Faster machine learning through dynamic python bytecode transformation and graph compilation.

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators Pytorch 2: Faster machine learning through dynamic python bytecode transformation and graph compilation

Reference 5

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unresolved
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Unavailable: canonical work link unavailable.

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Observation 3ffe4070-e1ec-440f-98a1-f3fbb8ab41db · outbound

This paper cites U ber die reaktionsgeschwindigkeit bei der inversion von rohrzucker durch s \.

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators U ber die reaktionsgeschwindigkeit bei der inversion von rohrzucker durch s \

Reference 6

Resolution
unresolved
no resolver link, observed 2026-08-03T01:06:01.897740Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

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Observation d4de0a02-578e-4c2b-aa07-9c67693f5ab0 · outbound

This paper cites Two for one: Diffusion models and force fields for coarse-grained molecular dynamics.

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators Two for one: Diffusion models and force fields for coarse-grained molecular dynamics

Reference 7

Resolution
unresolved
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Unavailable: canonical work link unavailable.

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Observation c2ccbbce-3650-4ca7-a5d4-5eb6dbe5782d · outbound

This paper cites an unresolved cited work.

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators Unresolved cited work

Reference 8

Resolution
verified exact
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

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Observation 3755c60b-8705-4803-bbc9-d657ba3364e6 · outbound

This paper cites an unresolved cited work.

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators Unresolved cited work

Reference 9

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Source-reported events for the cited work

Unavailable: canonical work link unavailable.

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Observation 9f51de2f-db78-4933-8fdc-9ffcaa0659a2 · outbound

This paper cites an unresolved cited work.

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators Unresolved cited work

Reference 10

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unresolved
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Unavailable: canonical work link unavailable.

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Observation cf2a58a3-ec5d-406c-9d74-4a5361bd4835 · outbound

This paper cites P., Davidson, D., Saremi, S., Rackers, J., and Kleinhenz, J.

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators P., Davidson, D., Saremi, S., Rackers, J., and Kleinhenz, J

Reference 11

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unresolved
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Unavailable: canonical work link unavailable.

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Observation 13067e0a-7628-48f5-a131-7bccca64c85b · outbound

This paper cites V., Atance, S.

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators V., Atance, S

Reference 12

Resolution
unresolved
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Unavailable: canonical work link unavailable.

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Observation 992fce41-89c2-4156-b10e-99c6a4ed3333 · outbound

This paper cites V., Schreiner, M., and Olsson, S.

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators V., Schreiner, M., and Olsson, S

Reference 13

Resolution
unresolved
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Source-reported events for the cited work

Unavailable: canonical work link unavailable.

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Observation 66273db1-dec4-437b-b5b8-af0a71c5bad5 · outbound

This paper cites V., Schreiner, M.

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators V., Schreiner, M

Reference 14

Resolution
unresolved
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Source-reported events for the cited work

Unavailable: canonical work link unavailable.

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Observation 57723f2a-c55f-406b-b9e3-6e9f4a645a2c · outbound

This paper cites Esm cambrian: Revealing the mysteries of proteins with unsupervised learning, 2024.

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators Esm cambrian: Revealing the mysteries of proteins with unsupervised learning, 2024

Reference 15

Resolution
unresolved
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Unavailable: canonical work link unavailable.

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Observation d30ae14d-755f-4e36-a003-596911b511ae · outbound

This paper cites K., Brock, K., Gal, Y., and Marks, D.

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators K., Brock, K., Gal, Y., and Marks, D

Reference 16

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unresolved
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Unavailable: canonical work link unavailable.

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Observation 764405aa-141d-4794-a29b-1d77bc936549 · outbound

This paper cites M., Bengtsen, T., Olsen, L., Lindorff-Larsen, K., Ferkinghoff-Borg, J., and Boomsma, W.

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators M., Bengtsen, T., Olsen, L., Lindorff-Larsen, K., Ferkinghoff-Borg, J., and Boomsma, W

Reference 17

Resolution
unresolved
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Source-reported events for the cited work

Unavailable: canonical work link unavailable.

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Observation 95d511c0-85b7-4ac7-a74d-288c22c1fa09 · outbound

This paper cites J., Olsen, B., and Jaakkola, T.

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators J., Olsen, B., and Jaakkola, T

Reference 18

Resolution
unresolved
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Source-reported events for the cited work

Unavailable: canonical work link unavailable.

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Observation 1bcf7e5a-8f65-4c15-bbb1-5222cd8d02cc · outbound

This paper cites Proteina: Scaling flow-based protein structure generative models.

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators Proteina: Scaling flow-based protein structure generative models

Reference 19

Resolution
unresolved
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Source-reported events for the cited work

Unavailable: canonical work link unavailable.

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Observation 36f77db5-bb71-4257-b6d9-e8665377c9da · outbound

This paper cites DeepSeek-R1: Incentivizing Reasoning Capability in LLMs via Reinforcement Learning.

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators DeepSeek-R1: Incentivizing Reasoning Capability in LLMs via Reinforcement Learning

Reference 20

Resolution
unresolved
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Source-reported events for the cited work

Unavailable: canonical work link unavailable.

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Observation f227f6e2-3314-4a11-a431-7d4f5f2f010e · outbound

This paper cites J., Oktay, D., Lin, Z., Verkuil, R., Tran, V.

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators J., Oktay, D., Lin, Z., Verkuil, R., Tran, V

Reference 21

Resolution
unresolved
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Source-reported events for the cited work

Unavailable: canonical work link unavailable.

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Observation b767e513-00b9-4fee-8b72-22b257b26a60 · outbound

This paper cites Markov field models: Scaling molecular kinetics approaches to large molecular machines.

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators Markov field models: Scaling molecular kinetics approaches to large molecular machines

Reference 22

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unresolved
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Unavailable: canonical work link unavailable.

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Observation d3b99527-1f01-410f-a608-b6a4dc6f6eee · outbound

This paper cites and Feig, M.

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators and Feig, M

Reference 23

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unresolved
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Source-reported events for the cited work

Unavailable: canonical work link unavailable.

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Observation a5b4743c-059c-4152-b582-16de8275792a · outbound

This paper cites Torsional diffusion for molecular conformer generation.

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators Torsional diffusion for molecular conformer generation

Reference 24

Resolution
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Unavailable: canonical work link unavailable.

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Observation d589908e-d18c-4e01-aaa7-73fb4b308b00 · outbound

This paper cites Generative modeling of molecular dynamics trajectories.

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators Generative modeling of molecular dynamics trajectories

Reference 25

Resolution
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Unavailable: canonical work link unavailable.

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Observation f5100615-ce48-4253-b07a-8e13ccc09269 · outbound

This paper cites and No\' e , F.

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators and No\' e , F

Reference 26

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unresolved
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Unavailable: canonical work link unavailable.

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Observation f0900ec6-2a70-4f2d-9aed-3c23601ce57a · outbound

This paper cites Timewarp: Transferable acceleration of molecular dynamics by learning time-coarsened dynamics.

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators Timewarp: Transferable acceleration of molecular dynamics by learning time-coarsened dynamics

Reference 27

Resolution
unresolved
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Unavailable: canonical work link unavailable.

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Observation 72bd59bb-5df4-469b-a034-0e6a887762e6 · outbound

This paper cites B., Osmark, P., Neergaard, T.

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators B., Osmark, P., Neergaard, T

Reference 28

Resolution
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Source-reported events for the cited work

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Observation 843221d8-475e-4415-be5e-8b5a9852cf14 · outbound

This paper cites an unresolved cited work.

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators Unresolved cited work

Reference 29

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unresolved
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Source-reported events for the cited work

Unavailable: canonical work link unavailable.

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Observation 8bd5c647-7e3a-48f5-af39-5b7108affaab · outbound

This paper cites Y., Satorras, V.

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators Y., Satorras, V

Reference 30

Resolution
unresolved
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Source-reported events for the cited work

Unavailable: canonical work link unavailable.

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Observation 3883330b-a78d-4dc0-9747-4c6009a98ba8 · outbound

This paper cites Out of Many, One: Designing and Scaffolding Proteins at the Scale of the Structural Universe with Genie 2.

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators Out of Many, One: Designing and Scaffolding Proteins at the Scale of the Structural Universe with Genie 2

Reference 31

Resolution
unresolved
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Source-reported events for the cited work

Unavailable: canonical work link unavailable.

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Observation d2298985-c993-4882-9fc7-f4b9d8be5110 · outbound

This paper cites Evolutionary-scale prediction of atomic-level protein structure with a language model.

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators Evolutionary-scale prediction of atomic-level protein structure with a language model

Reference 32

Resolution
unresolved
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Source-reported events for the cited work

Unavailable: canonical work link unavailable.

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Observation 8990b1e1-58ec-468f-ab86-623ae6ff9928 · outbound

This paper cites O., and Shaw, D.

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators O., and Shaw, D

Reference 33

Resolution
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Source-reported events for the cited work

Unavailable: canonical work link unavailable.

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Observation e18ba3c6-6ba0-4748-9a1f-1134861dc591 · outbound

This paper cites an unresolved cited work.

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators Unresolved cited work

Reference 34

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Unavailable: canonical work link unavailable.

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Observation 2ca2ff25-3dd9-4ff0-869a-7ecbdf8e8026 · outbound

This paper cites Flow straight and fast: Learning to generate and transfer data with rectified flow.

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators Flow straight and fast: Learning to generate and transfer data with rectified flow

Reference 35

Resolution
unresolved
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Unavailable: canonical work link unavailable.

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Observation ed64c2ad-da9d-4ce2-b4a3-adbc66173857 · outbound

This paper cites Vampnets for deep learning of molecular kinetics.

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators Vampnets for deep learning of molecular kinetics

Reference 36

Resolution
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Unavailable: canonical work link unavailable.

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Observation bc4b83b7-a450-419e-bb00-942e95e35e09 · outbound

This paper cites Language models enable zero-shot prediction of the effects of mutations on protein function.

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators Language models enable zero-shot prediction of the effects of mutations on protein function

Reference 37

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unresolved
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Unavailable: canonical work link unavailable.

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Observation e4b0bc9e-2e8a-4983-a583-cdea0b6a1ad5 · outbound

This paper cites mdcath: A large-scale md dataset for data-driven computational biophysics.

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators mdcath: A large-scale md dataset for data-driven computational biophysics

Reference 38

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Observation dc2e718d-d6b9-4d31-b061-512b7a996a3a · outbound

This paper cites Thermodynamic interpolation: A generative approach to molecular thermodynamics and kinetics.

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators Thermodynamic interpolation: A generative approach to molecular thermodynamics and kinetics

Reference 39

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Observation 669c71fc-698a-4cd8-acfb-16cc5c5dda1a · outbound

This paper cites H., Brotzakis, Z.

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators H., Brotzakis, Z

Reference 40

Resolution
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Observation c4230708-b462-45d0-aeaf-76f9e933c304 · outbound

This paper cites Flow matching for accelerated simulation of atomic transport in crystalline materials.

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators Flow matching for accelerated simulation of atomic transport in crystalline materials

Reference 41

Resolution
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Observation 4215cb13-fa23-47ad-844e-ca4bc0cefe1b · outbound

This paper cites Boltzmann generators: Sampling equilibrium states of many-body systems with deep learning.

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators Boltzmann generators: Sampling equilibrium states of many-body systems with deep learning

Reference 42

Resolution
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Observation 2b8c3b27-8426-4e72-92a6-aa331dbd2df0 · outbound

This paper cites G., Pérez-Hernández, G., Mey, A.

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators G., Pérez-Hernández, G., Mey, A

Reference 43

Resolution
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Observation 51ab45ce-fae5-481d-aaab-92f714af713e · outbound

This paper cites and No \'e , F.

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators and No \'e , F

Reference 45

Resolution
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Observation 5cd5f256-9c98-46a6-89c6-66169c18d61f · outbound

This paper cites Identification of slow molecular order parameters for markov model construction.

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators Identification of slow molecular order parameters for markov model construction

Reference 46

Resolution
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Observation f9614f13-c62e-4b16-8ecc-b8bba34744bc · outbound

This paper cites an unresolved cited work.

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators Unresolved cited work

Reference 47

Resolution
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Observation 2e251582-bc9b-4c23-b176-4fdac1bd914b · outbound

This paper cites Consistent sampling and simulation: Molecular dynamics with energy-based diffusion models.

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators Consistent sampling and simulation: Molecular dynamics with energy-based diffusion models

Reference 48

Resolution
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Observation 34798277-2797-45e9-94f8-517fc429128f · outbound

This paper cites D., Sch \"u tte, C., and No \'e , F.

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators D., Sch \"u tte, C., and No \'e , F

Reference 49

Resolution
unresolved
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Observation 662c86ba-bf7b-4228-ad6c-52ee6b5dc8b3 · outbound

This paper cites D., Noé, F., and Olsson, S.

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators D., Noé, F., and Olsson, S

Reference 50

Resolution
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Observation 24c2699f-50e7-48b1-9dfc-22c21c655592 · outbound

This paper cites and Weber, M.

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators and Weber, M

Reference 51

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Observation 0c076264-64c7-40f1-8d45-3aa22f912369 · outbound

This paper cites an unresolved cited work.

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators Unresolved cited work

Reference 52

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unresolved
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Observation 2c275d04-707e-48d6-81b9-f8dc9bba4049 · outbound

This paper cites Efficient mapping of phase diagrams with conditional boltzmann generators.

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators Efficient mapping of phase diagrams with conditional boltzmann generators

Reference 53

Resolution
verified exact
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Source-reported events for the cited work

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Observation 76235c7b-9663-42cc-85c6-7a350980e82a · outbound

This paper cites and Schmid, F.

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators and Schmid, F

Reference 54

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unresolved
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Observation 7bdbc707-d77f-4434-868a-504b18b594ab · outbound

This paper cites Implicit transfer operator learning: Multiple time-resolution models for molecular dynamics.

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators Implicit transfer operator learning: Multiple time-resolution models for molecular dynamics

Reference 55

Resolution
unresolved
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Observation 711f96d1-0e1a-4c77-a1d2-45b76d3e971b · outbound

This paper cites B., Bose, J., Lin, C., Klein, L., Bronstein, M.

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators B., Bose, J., Lin, C., Klein, L., Bronstein, M

Reference 56

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unresolved
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Observation 2ed98986-3f69-4399-9d01-7d76da0dbc38 · outbound

This paper cites an unresolved cited work.

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators Unresolved cited work

Reference 57

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Observation 6ee68f9d-5a28-4f01-bfb1-10b500613a21 · outbound

This paper cites Alphafold protein structure database: massively expanding the structural coverage of protein-sequence space with high-accuracy models.

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators Alphafold protein structure database: massively expanding the structural coverage of protein-sequence space with high-accuracy models

Reference 58

Resolution
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Observation 18592508-c375-4f3e-910f-bbc6a962cbe1 · outbound

This paper cites N., Kaiser, ., and Polosukhin, I.

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators N., Kaiser, ., and Polosukhin, I

Reference 59

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unresolved
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Observation c2c18d51-36d5-43a4-8bd9-54982af32561 · outbound

This paper cites R., Zavadlav, J., Praprotnik, M., and Koumoutsakos, P.

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators R., Zavadlav, J., Praprotnik, M., and Koumoutsakos, P

Reference 60

Resolution
verified exact
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No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

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Observation 58a628fd-e714-4446-a8b7-45128c6de58b · outbound

This paper cites J., and Raleigh, D.

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators J., and Raleigh, D

Reference 61

Resolution
verified exact
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

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Observation 29341d65-99f6-4372-a84d-6fbbb7cc588e · outbound

This paper cites Energy-based diffusion generator for efficient sampling of boltzmann distributions.

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators Energy-based diffusion generator for efficient sampling of boltzmann distributions

Reference 62

Resolution
unresolved
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Observation c8a1d7ad-26da-4812-aeac-11af57a2feeb · outbound

This paper cites and Noé, F.

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators and Noé, F

Reference 63

Resolution
unresolved
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source=arxiv_source observed=2026-08-03T01:06:05.216802Z digest=sha256:40f8378bead888c726e797c651903750e5942fce4129933aacf676eb07f47cf8

Observation 1b375ed9-3426-4e12-99fe-eb1c3bc34e93 · outbound

This paper cites Projected metastable markov processes and their estimation with observable operator models.

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators Projected metastable markov processes and their estimation with observable operator models

Reference 64

Resolution
verified exact
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

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Observation e6527473-18d0-4f04-bf10-0f23658b0e86 · outbound

This paper cites and Bowman, G.

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators and Bowman, G

Reference 65

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unresolved
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Pith citing papers

Observation b610b416-be66-4be8-8a43-475f03a76151 · inbound

Design-CP: Context Parallelism for Design of Protein Nanoparticles cites this paper.

Design-CP: Context Parallelism for Design of Protein Nanoparticles Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators

Reference 108

Resolution
verified exact
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No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

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