Paper Citation Record · LEDGER

Probing 3D Chromatin Structure Awareness in Evo2 DNA Language Model

As of 12 August 2026, this Paper Citation Record lists 16 of 16 outbound references and 0 inbound Pith citation observations for arXiv:2604.07196.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2604.07196 v1

Coverage vector

measured 16 of 16 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-05-10T17:55:29.224979Z

measured 16 of 16 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-11T06:34:44.6726+00:00

measured 0 of 0 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: cited_works

Reference resolution

16 of 16 outbound references displayed

verified exact0
verified fuzzy11
unresolved5
parse uncertain0
malformed identifier0
metadata mismatch0

External citation measurements

No source-named external measurement is stored.

Outbound references

Observation f9a67e8c-0e6c-40a0-b310-23ff23db62f6 · outbound

This paper cites and Cavalli, G.

Probing 3D Chromatin Structure Awareness in Evo2 DNA Language Model and Cavalli, G

Reference 1

Resolution: verified fuzzy; raw_fallback, observed 2026-05-17T08:14:18.084930Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation 98bf7c2d-65bc-4429-8bba-ae7707665a61 · outbound

This paper cites P., Goodarzi, H., Hsu, P.

Probing 3D Chromatin Structure Awareness in Evo2 DNA Language Model P., Goodarzi, H., Hsu, P

Reference 2

Resolution: verified fuzzy; raw_fallback, observed 2026-05-17T08:14:18.063767Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation 8a42e324-59c6-4e3b-a115-33110ebf2912 · outbound

This paper cites DNALONGBENCH: a bench- mark suite for long-range DNA prediction tasks.Nature Communications, 16(1):10108.

Probing 3D Chromatin Structure Awareness in Evo2 DNA Language Model DNALONGBENCH: a bench- mark suite for long-range DNA prediction tasks.Nature Communications, 16(1):10108

Reference 3

Resolution: verified fuzzy; raw_fallback, observed 2026-05-17T08:14:18.090871Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation 1df5bac9-dcb9-4612-99de-0654adc4ca7a · outbound

This paper cites S., Meuleman, W., and Pinello, L.

Probing 3D Chromatin Structure Awareness in Evo2 DNA Language Model S., Meuleman, W., and Pinello, L

Reference 4

Resolution: verified fuzzy; raw_fallback, observed 2026-05-17T08:14:18.096667Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation e9876c3f-a23d-4ccd-9c00-3aa27419278b · outbound

This paper cites S., Stemmer-Rachamimov, A.

Probing 3D Chromatin Structure Awareness in Evo2 DNA Language Model S., Stemmer-Rachamimov, A

Reference 5

Resolution: verified fuzzy; raw_fallback, observed 2026-05-17T08:14:18.079015Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation 85764d58-d384-4f42-a009-bb5126b90a93 · outbound

This paper cites an unresolved cited work.

Probing 3D Chromatin Structure Awareness in Evo2 DNA Language Model Unresolved cited work

Reference 6

Resolution: unresolved; raw_fallback, observed 2026-05-17T08:14:18.107564Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation fd1ed96e-7d23-4605-b77c-cc2762026161 · outbound

This paper cites an unresolved cited work.

Probing 3D Chromatin Structure Awareness in Evo2 DNA Language Model Unresolved cited work

Reference 7

Resolution: unresolved; raw_fallback, observed 2026-05-17T08:14:18.099581Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation 6b40512a-dfb8-46fc-ab49-b1f3917751fb · outbound

This paper cites an unresolved cited work.

Probing 3D Chromatin Structure Awareness in Evo2 DNA Language Model Unresolved cited work

Reference 8

Resolution: unresolved; raw_fallback, observed 2026-05-17T08:14:18.071026Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation 140c493e-12b5-40c6-ab25-850c8edfd61c · outbound

This paper cites CRISPR Inversion of CTCF Sites Alters Genome Topology and Enhancer/Promoter Function.Cell, 162(4):900–910.

Probing 3D Chromatin Structure Awareness in Evo2 DNA Language Model CRISPR Inversion of CTCF Sites Alters Genome Topology and Enhancer/Promoter Function.Cell, 162(4):900–910

Reference 9

Resolution: verified fuzzy; raw_fallback, observed 2026-05-17T08:14:18.073898Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation b490e40d-7b22-4227-8143-a45ea46ff1f6 · outbound

This paper cites an unresolved cited work.

Probing 3D Chromatin Structure Awareness in Evo2 DNA Language Model Unresolved cited work

Reference 10

Resolution: unresolved; raw_fallback, observed 2026-05-17T08:14:18.076475Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation 5393c7b4-4d7a-4067-99d1-ec1255a194b1 · outbound

This paper cites S., Parsi, K.

Probing 3D Chromatin Structure Awareness in Evo2 DNA Language Model S., Parsi, K

Reference 11

Resolution: verified fuzzy; raw_fallback, observed 2026-05-17T08:14:18.102230Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation 9a0ac158-abfd-4a83-9eab-2e83a7cffe20 · outbound

This paper cites Post-mitotic transcriptional activation and 3D regulatory interactions show locus- and differentiation- specific sensitivity to cohesin depletion.bioRxiv.

Probing 3D Chromatin Structure Awareness in Evo2 DNA Language Model Post-mitotic transcriptional activation and 3D regulatory interactions show locus- and differentiation- specific sensitivity to cohesin depletion.bioRxiv

Reference 12

Resolution: verified fuzzy; raw_fallback, observed 2026-05-17T08:14:18.082192Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation c6fc6eee-e84f-4748-8441-e973c4f9010f · outbound

This paper cites A., Osterwalder, M., Franke, M., Timmermann, B., Hecht, J., Spielmann, M., Visel, A., and Mundlos, S.

Probing 3D Chromatin Structure Awareness in Evo2 DNA Language Model A., Osterwalder, M., Franke, M., Timmermann, B., Hecht, J., Spielmann, M., Visel, A., and Mundlos, S

Reference 13

Resolution: verified fuzzy; raw_fallback, observed 2026-05-17T08:14:18.105011Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation ee6f1b20-244a-46ce-ba5d-dba34c0e3dfe · outbound

This paper cites Caduceus: Bi-Directional Equivariant Long- Range DNA Sequence Modeling.

Probing 3D Chromatin Structure Awareness in Evo2 DNA Language Model Caduceus: Bi-Directional Equivariant Long- Range DNA Sequence Modeling

Reference 14

Resolution: verified fuzzy; raw_fallback, observed 2026-05-17T08:14:18.087904Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation 2cdccdb3-291b-480b-9d07-ed76a179fe20 · outbound

This paper cites an unresolved cited work.

Probing 3D Chromatin Structure Awareness in Evo2 DNA Language Model Unresolved cited work

Reference 15

Resolution: unresolved; raw_fallback, observed 2026-05-17T08:14:18.066886Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation a1ffde27-032b-4494-a995-4c0ef8a634fe · outbound

This paper cites Sequence-based modeling of three-dimensional genome architecture from kilobase to chromosome scale.

Probing 3D Chromatin Structure Awareness in Evo2 DNA Language Model Sequence-based modeling of three-dimensional genome architecture from kilobase to chromosome scale

Reference 16

Resolution: verified fuzzy; raw_fallback, observed 2026-05-17T08:14:18.093800Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Pith citing papers

No inbound Pith citation observations are available.