Paper Citation Record · LEDGER

Scaffold-Conditioned Preference Triplets for Controllable Molecular Optimization with Large Language Models

As of 7 August 2026, this Paper Citation Record lists 34 of 34 outbound references and 0 inbound Pith citation observations for arXiv:2604.12350.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2604.12350 v1

Coverage vector

measured 34 of 34 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-07-11T11:50:26.030339Z

measured 34 of 34 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-07T06:34:17.273281+00:00

measured 0 of 0 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: cited_works

Reference resolution

34 of 34 outbound references displayed

verified exact15
verified fuzzy4
unresolved2
parse uncertain0
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External citation measurements

No source-named external measurement is stored.

Outbound references

Observation e7354bb0-3b6e-412c-8f93-c808962b6074 · outbound

This paper cites GPT-4 Technical Report.

Scaffold-Conditioned Preference Triplets for Controllable Molecular Optimization with Large Language Models GPT-4 Technical Report

Reference 1

Resolution: verified exact; local_arxiv, observed 2026-05-11T09:46:07.144274Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 6437f946-3d05-4c1e-ae67-9fa588c8bf17 · outbound

This paper cites Viraj Bagal, Rishal Aggarwal, P.

Scaffold-Conditioned Preference Triplets for Controllable Molecular Optimization with Large Language Models Viraj Bagal, Rishal Aggarwal, P

Reference 2

Resolution: verified fuzzy; raw_fallback, observed 2026-05-17T18:25:05.696925Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 6bdf3b57-b6fa-4ef9-baec-1207966bda24 · outbound

This paper cites Bagal, R.

Scaffold-Conditioned Preference Triplets for Controllable Molecular Optimization with Large Language Models Bagal, R

Reference 3

Resolution: verified exact; doi, observed 2026-05-10T21:45:48.068975Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 9e59b26b-1a91-4cd0-bdb1-a4d06e4331ea · outbound

This paper cites Augmenting large language models with chemistry tools.

Scaffold-Conditioned Preference Triplets for Controllable Molecular Optimization with Large Language Models Augmenting large language models with chemistry tools

Reference 4

Resolution: metadata mismatch; doi, observed 2026-05-10T21:45:48.038883Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation a0943a1d-7ff2-46f7-9e8a-829b23266c33 · outbound

This paper cites doi: https://doi.org/10.1016/j.ymeth.2014.08.005.

Scaffold-Conditioned Preference Triplets for Controllable Molecular Optimization with Large Language Models doi: https://doi.org/10.1016/j.ymeth.2014.08.005

Reference 5

Resolution: verified exact; doi, observed 2026-05-10T21:45:47.968245Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 8e8a9e80-d425-400c-b83c-3dbedfb8970c · outbound

This paper cites Bickerton, G.

Scaffold-Conditioned Preference Triplets for Controllable Molecular Optimization with Large Language Models Bickerton, G

Reference 6

Resolution: metadata mismatch; doi, observed 2026-05-10T21:45:47.960394Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 157b4ba9-c470-48ff-be5d-a227afe3332b · outbound

This paper cites The Llama 3 Herd of Models.

Scaffold-Conditioned Preference Triplets for Controllable Molecular Optimization with Large Language Models The Llama 3 Herd of Models

Reference 7

Resolution: metadata mismatch; local_arxiv, observed 2026-05-10T21:45:48.052067Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 8fe83318-7e8a-49f1-a166-0effaf5d8e48 · outbound

This paper cites Wenhao Gao, Tianfan Fu, Jimeng Sun, and Connor Coley.

Scaffold-Conditioned Preference Triplets for Controllable Molecular Optimization with Large Language Models Wenhao Gao, Tianfan Fu, Jimeng Sun, and Connor Coley

Reference 8

Resolution: verified fuzzy; raw_fallback, observed 2026-05-17T18:25:05.681282Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 2f1f8b83-5928-4f74-afd7-381aff19d51f · outbound

This paper cites Gómez-Bombarelli, J.

Scaffold-Conditioned Preference Triplets for Controllable Molecular Optimization with Large Language Models Gómez-Bombarelli, J

Reference 9

Resolution: metadata mismatch; doi, observed 2026-05-10T21:45:47.986310Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 2d927ebc-a63a-406b-afe1-4a7b51ef7b8b · outbound

This paper cites Chemformer: A pre- trained transformer for computational chemistry.

Scaffold-Conditioned Preference Triplets for Controllable Molecular Optimization with Large Language Models Chemformer: A pre- trained transformer for computational chemistry

Reference 10

Resolution: metadata mismatch; doi, observed 2026-05-10T21:45:47.941241Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 1597b3ee-149e-4088-93f7-3f546680d90f · outbound

This paper cites title =.

Scaffold-Conditioned Preference Triplets for Controllable Molecular Optimization with Large Language Models title =

Reference 11

Resolution: metadata mismatch; doi, observed 2026-05-10T21:45:48.060954Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 652d2a65-1f94-4471-b565-e1286afc1db9 · outbound

This paper cites Mistral 7B.

Scaffold-Conditioned Preference Triplets for Controllable Molecular Optimization with Large Language Models Mistral 7B

Reference 12

Resolution: metadata mismatch; local_arxiv, observed 2026-05-11T09:46:07.132171Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 59af848b-1684-4198-81c4-54d42f89fce8 · outbound

This paper cites Self-Referencing Embedded Strings (SELFIES): A 100% Robust Molecular String Representation.

Scaffold-Conditioned Preference Triplets for Controllable Molecular Optimization with Large Language Models Self-Referencing Embedded Strings (SELFIES): A 100% Robust Molecular String Representation

Reference 13

Resolution: metadata mismatch; doi, observed 2026-05-10T21:45:48.030207Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 15459911-653a-4b49-8544-b845fcba80c3 · outbound

This paper cites Peiyao Li, Lan Hua, Zhechao Ma, Wenbo Hu, Ye Liu, and Jun Zhu.

Scaffold-Conditioned Preference Triplets for Controllable Molecular Optimization with Large Language Models Peiyao Li, Lan Hua, Zhechao Ma, Wenbo Hu, Ye Liu, and Jun Zhu

Reference 14

Resolution: verified fuzzy; raw_fallback, observed 2026-05-17T18:25:05.691784Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 56c42971-7d52-49bc-8519-f6ef75c61a6e · outbound

This paper cites doi: 10.1021/acs.jcim.4c01139.

Scaffold-Conditioned Preference Triplets for Controllable Molecular Optimization with Large Language Models doi: 10.1021/acs.jcim.4c01139

Reference 15

Resolution: verified exact; doi, observed 2026-05-10T21:45:47.993693Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 12efa0f7-5067-4ac6-8d5c-a3294e8ee6ff · outbound

This paper cites doi: https://doi.org/10.1016/j.sbi.2023.102537.

Scaffold-Conditioned Preference Triplets for Controllable Molecular Optimization with Large Language Models doi: https://doi.org/10.1016/j.sbi.2023.102537

Reference 16

Resolution: verified exact; arxiv_id, observed 2026-05-10T21:45:48.046504Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation af94bb4b-081b-4902-832a-b581591cb553 · outbound

This paper cites doi: 10.1021/jm1013693.

Scaffold-Conditioned Preference Triplets for Controllable Molecular Optimization with Large Language Models doi: 10.1021/jm1013693

Reference 17

Resolution: verified exact; doi, observed 2026-05-10T21:45:48.055121Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 2d776148-6afa-4d8e-8a95-5c6290efd80c · outbound

This paper cites URLhttps://doi.org/10.1186/s13321-017-0235-x.

Scaffold-Conditioned Preference Triplets for Controllable Molecular Optimization with Large Language Models URLhttps://doi.org/10.1186/s13321-017-0235-x

Reference 18

Resolution: verified exact; doi, observed 2026-05-10T21:45:48.034195Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 542dc202-069b-48ec-ace4-b762a7feba74 · outbound

This paper cites doi: 10.1021/acscentsci.3c00572.

Scaffold-Conditioned Preference Triplets for Controllable Molecular Optimization with Large Language Models doi: 10.1021/acscentsci.3c00572

Reference 19

Resolution: verified exact; doi, observed 2026-05-10T21:45:47.945292Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 8d448dce-6bfc-447a-8d7a-4695b68d1873 · outbound

This paper cites Direct Preference Optimization: Your Language Model is Secretly a Reward Model.

Scaffold-Conditioned Preference Triplets for Controllable Molecular Optimization with Large Language Models Direct Preference Optimization: Your Language Model is Secretly a Reward Model

Reference 20

Resolution: metadata mismatch; local_arxiv, observed 2026-05-11T09:46:07.128449Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 27a3f258-8a7c-4b62-a770-869653b93073 · outbound

This paper cites Communications Materials , year =.

Scaffold-Conditioned Preference Triplets for Controllable Molecular Optimization with Large Language Models Communications Materials , year =

Reference 21

Resolution: metadata mismatch; doi, observed 2026-05-10T21:45:48.072966Z

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No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 036ba7df-1e17-436f-b760-fcee932108e2 · outbound

This paper cites URL https: //doi.org/10.1021/acs.jcim.5b00559.

Scaffold-Conditioned Preference Triplets for Controllable Molecular Optimization with Large Language Models URL https: //doi.org/10.1021/acs.jcim.5b00559

Reference 22

Resolution: verified exact; doi, observed 2026-05-10T21:45:48.066140Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 0feb6d01-a9d4-487e-a405-fe98e2b571bb · outbound

This paper cites URLhttp://dx.doi.org/10.1039/CS9790800563.

Scaffold-Conditioned Preference Triplets for Controllable Molecular Optimization with Large Language Models URLhttp://dx.doi.org/10.1039/CS9790800563

Reference 23

Resolution: verified exact; doi, observed 2026-05-10T21:45:47.976706Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation c53b40c0-f3e2-4288-a065-8fddb0a70ba3 · outbound

This paper cites doi: 10.1038/s42256-022-00447-x.

Scaffold-Conditioned Preference Triplets for Controllable Molecular Optimization with Large Language Models doi: 10.1038/s42256-022-00447-x

Reference 24

Resolution: verified exact; doi, observed 2026-05-10T21:45:48.011344Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation d94b0e61-23b6-4983-87d6-4a4a3ef84b75 · outbound

This paper cites Weininger.

Scaffold-Conditioned Preference Triplets for Controllable Molecular Optimization with Large Language Models Weininger

Reference 25

Resolution: metadata mismatch; doi, observed 2026-05-10T21:45:48.077974Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation d3a9f06f-f9bd-4071-b79f-3f3849ce11f7 · outbound

This paper cites an unresolved cited work.

Scaffold-Conditioned Preference Triplets for Controllable Molecular Optimization with Large Language Models Unresolved cited work

Reference 26

Resolution: verified exact; doi, observed 2026-05-10T21:45:48.082930Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 75fcc264-95f8-4bcb-88f4-1ac39f59aa28 · outbound

This paper cites URLhttps://doi.org/10.3390/ijms26104878.

Scaffold-Conditioned Preference Triplets for Controllable Molecular Optimization with Large Language Models URLhttps://doi.org/10.3390/ijms26104878

Reference 27

Resolution: verified exact; doi, observed 2026-05-10T21:45:48.023743Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation fa2461a0-b9ac-4399-a2f1-9f5dc7627b5e · outbound

This paper cites ChemLLM: A Chemical Large Language Model.

Scaffold-Conditioned Preference Triplets for Controllable Molecular Optimization with Large Language Models ChemLLM: A Chemical Large Language Model

Reference 28

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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 06124983-15f6-45a4-b396-14de6c9da93c · outbound

This paper cites doi: 10.1145/3715318.

Scaffold-Conditioned Preference Triplets for Controllable Molecular Optimization with Large Language Models doi: 10.1145/3715318

Reference 29

Resolution: verified exact; doi, observed 2026-05-10T21:45:48.090663Z

Source-reported events for the cited work

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Observation eab68b84-dcb0-48d8-a035-2b2446e6eba9 · outbound

This paper cites doi: https://doi.org/10.1002/qub2.30.

Scaffold-Conditioned Preference Triplets for Controllable Molecular Optimization with Large Language Models doi: https://doi.org/10.1002/qub2.30

Reference 30

Resolution: verified exact; doi, observed 2026-05-10T21:45:47.949296Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation f6f6dd2d-e98e-4d06-9881-ea974452e7b9 · outbound

This paper cites an unresolved cited work.

Scaffold-Conditioned Preference Triplets for Controllable Molecular Optimization with Large Language Models Unresolved cited work

Reference 31

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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 913b838d-87da-4d6f-af5d-936e1cacfd22 · outbound

This paper cites higher is better.

Scaffold-Conditioned Preference Triplets for Controllable Molecular Optimization with Large Language Models higher is better

Reference 32

Resolution: verified fuzzy; raw_fallback, observed 2026-05-17T18:25:05.689120Z

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No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 774bbf91-de11-4032-bf3d-d3ca9375d6a9 · outbound

This paper cites an unresolved cited work.

Scaffold-Conditioned Preference Triplets for Controllable Molecular Optimization with Large Language Models Unresolved cited work

Reference 33

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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 7b380e40-2c08-4c7a-877b-a2f3ee1e6cb6 · outbound

This paper cites better" and.

Scaffold-Conditioned Preference Triplets for Controllable Molecular Optimization with Large Language Models better" and

Reference 34

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No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Pith citing papers

No inbound Pith citation observations are available.