CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation | Paper Citation Record

Observation 02ae521f-84d0-48b2-8f38-d59bf3653b16 · outbound

This paper cites an unresolved cited work.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation Unresolved cited work

Reference 1

Resolution: unresolved; raw_fallback, observed 2026-05-26T00:51:27.818605Z

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Observation 824070a0-dd8d-4b0a-b2dd-bb5db9bbb300 · outbound

This paper cites GPT-4 Technical Report.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation GPT-4 Technical Report

Reference 2

Resolution: verified exact; local_arxiv, observed 2026-05-11T16:36:07.825206Z

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Observation 0dc50b4a-d2f1-44b0-9efa-647b09efaf6b · outbound

This paper cites Stochastic Interpolants: A Unifying Framework for Flows and Diffusions.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation Stochastic Interpolants: A Unifying Framework for Flows and Diffusions

Reference 3

Resolution: verified exact; arxiv_id, observed 2026-05-11T20:45:22.179902Z

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Observation f154862c-3f94-4012-9350-4f8a41cb9453 · outbound

This paper cites Layer Normalization.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation Layer Normalization

Reference 4

Resolution: verified exact; local_arxiv, observed 2026-05-11T16:36:07.847900Z

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Observation 58846fea-3f38-469b-9a38-2ec11078229a · outbound

This paper cites Free energy calculations by computer simulation.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation Free energy calculations by computer simulation

Reference 5

Resolution: verified fuzzy; raw_fallback, observed 2026-05-26T00:51:27.659903Z

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Observation 88661810-87bc-4ded-b21a-89df3cec527b · outbound

This paper cites Efficient estimation of free energy differences from monte carlo data.Journal of Computational Physics, 22(2):245–268.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation Efficient estimation of free energy differences from monte carlo data.Journal of Computational Physics, 22(2):245–268

Reference 6

Resolution: verified fuzzy; raw_fallback, observed 2026-05-26T00:51:27.800299Z

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Observation 7d03d32f-84e0-482a-9c88-1b244919bc3e · outbound

This paper cites Development and benchmarking of open force field 2.0.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation Development and benchmarking of open force field 2.0

Reference 7

Resolution: verified fuzzy; raw_fallback, observed 2026-05-26T00:51:27.642286Z

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Observation f1cde310-26e2-44f1-85fe-bff7e35d7f16 · outbound

This paper cites Language models are few-shot learners.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation Language models are few-shot learners

Reference 8

Resolution: verified fuzzy; raw_fallback, observed 2026-05-26T00:51:27.681647Z

Source-reported events for the cited work

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Observation 6ee87725-da15-4d51-b711-85adea4d572e · outbound

This paper cites Free energy methods for the description of molecular processes.Annual Review of Biophysics, 52(1):113–138.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation Free energy methods for the description of molecular processes.Annual Review of Biophysics, 52(1):113–138

Reference 9

Resolution: verified fuzzy; raw_fallback, observed 2026-05-26T00:51:27.708677Z

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No event found in the named queried sources as of 2026-08-04T06:34:03.388597+00:00.

Observation bdc8a83e-1e2f-41b9-b53d-79bf965a1f80 · outbound

This paper cites Alchemical free energy methods for drug discovery: progress and challenges.Current opinion in structural biology, 21(2):150–160.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation Alchemical free energy methods for drug discovery: progress and challenges.Current opinion in structural biology, 21(2):150–160

Reference 10

Resolution: verified fuzzy; raw_fallback, observed 2026-05-26T00:51:27.627530Z

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Observation 340c672a-ac83-4837-9b82-04779a3d5c38 · outbound

This paper cites Relative binding free energy calculations in drug discovery: recent advances and practical considerations.Journal of chemical information and modeling, 57(12):2911–2937.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation Relative binding free energy calculations in drug discovery: recent advances and practical considerations.Journal of chemical information and modeling, 57(12):2911–2937

Reference 11

Resolution: verified fuzzy; raw_fallback, observed 2026-05-26T00:51:27.677741Z

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Observation e2a6db12-7a7c-4a3e-8d4d-018d3378ad70 · outbound

This paper cites Extending the applicability of the ani deep learning molecular potential to sulfur and halogens.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation Extending the applicability of the ani deep learning molecular potential to sulfur and halogens

Reference 12

Resolution: verified fuzzy; raw_fallback, observed 2026-05-26T00:51:27.673940Z

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Observation 5c68ece2-366f-46ff-a290-8c143c279e10 · outbound

This paper cites Deepbar: a fast and exact method for binding free energy computation.The journal of physical chemistry letters, 12(10):2509–2515.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation Deepbar: a fast and exact method for binding free energy computation.The journal of physical chemistry letters, 12(10):2509–2515

Reference 13

Resolution: verified fuzzy; raw_fallback, observed 2026-05-26T00:51:27.670266Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-04T06:34:03.388597+00:00.

Observation 5455d6ee-38bf-4592-baad-57dcf5d678f6 · outbound

This paper cites Uncertainty driven active learning of coarse grained free energy models.npj Computational Materials, 10(1):9.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation Uncertainty driven active learning of coarse grained free energy models.npj Computational Materials, 10(1):9

Reference 14

Resolution: verified fuzzy; raw_fallback, observed 2026-05-26T00:51:27.804205Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-04T06:34:03.388597+00:00.

Observation a26f62f3-244c-487f-b7fb-07648d19b456 · outbound

This paper cites Openmm 8: molecular dynamics simulation with machine learning potentials.The Journal of Physical Chemistry B, 128(1):109–116.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation Openmm 8: molecular dynamics simulation with machine learning potentials.The Journal of Physical Chemistry B, 128(1):109–116

Reference 15

Resolution: verified fuzzy; raw_fallback, observed 2026-05-26T00:51:27.722828Z

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No event found in the named queried sources as of 2026-08-04T06:34:03.388597+00:00.

Observation 7800ae92-c584-4756-9251-61340f5b025b · outbound

This paper cites Freeflow: Latent flow matching for free energy difference estimation.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation Freeflow: Latent flow matching for free energy difference estimation

Reference 16

Resolution: verified fuzzy; raw_fallback, observed 2026-05-26T00:51:27.652901Z

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Observation da6c00e3-a99f-4e59-b38d-dce66c8e524b · outbound

This paper cites Protein-ligand binding representation learning from fine-grained interactions.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation Protein-ligand binding representation learning from fine-grained interactions

Reference 17

Resolution: verified fuzzy; raw_fallback, observed 2026-05-26T00:51:27.656491Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-04T06:34:03.388597+00:00.

Observation 2fb5701e-c436-40a4-af03-1015ca10993c · outbound

This paper cites Algorithm 97: shortest path.Communications of the ACM, 5(6):345–345.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation Algorithm 97: shortest path.Communications of the ACM, 5(6):345–345

Reference 18

Resolution: verified fuzzy; raw_fallback, observed 2026-05-26T00:51:27.701728Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-04T06:34:03.388597+00:00.

Observation 9041fc71-c416-407e-b4c4-3a0872ac82e9 · outbound

This paper cites Self-supervised pocket pretraining via protein fragment-surroundings alignment.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation Self-supervised pocket pretraining via protein fragment-surroundings alignment

Reference 19

Resolution: verified fuzzy; raw_fallback, observed 2026-05-26T00:51:27.711790Z

Source-reported events for the cited work

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Observation a2bc867d-817a-4568-b563-b4f79ca9e2f3 · outbound

This paper cites On free energy calculations in drug discovery.Accounts of Chemical Research, 58(20):3137–3145.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation On free energy calculations in drug discovery.Accounts of Chemical Research, 58(20):3137–3145

Reference 20

Resolution: verified fuzzy; raw_fallback, observed 2026-05-26T00:51:27.766731Z

Source-reported events for the cited work

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Observation d96363ed-94de-47f8-b325-3f9eaf15672d · outbound

This paper cites Merck molecular force field.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation Merck molecular force field

Reference 21

Resolution: verified fuzzy; raw_fallback, observed 2026-05-26T00:51:27.688201Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-04T06:34:03.388597+00:00.

Observation b479e985-13e7-405e-a386-40070eee23e6 · outbound

This paper cites Feat: Free energy estimators with adaptive transport.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation Feat: Free energy estimators with adaptive transport

Reference 22

Resolution: verified exact; arxiv_id, observed 2026-05-11T16:36:07.807819Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-04T06:34:03.388597+00:00.

Observation f9cce68d-8add-44e2-9c63-cd7bc74478d8 · outbound

This paper cites Denoising diffusion probabilistic models.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation Denoising diffusion probabilistic models

Reference 23

Resolution: verified fuzzy; raw_fallback, observed 2026-05-26T00:51:27.756655Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-04T06:34:03.388597+00:00.

Observation a9efe2ff-5f34-4975-abf0-c76bba156636 · outbound

This paper cites Multiresolution equivariant graph variational autoencoder.Machine Learning: Science and Technology, 4(1):015031.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation Multiresolution equivariant graph variational autoencoder.Machine Learning: Science and Technology, 4(1):015031

Reference 24

Resolution: verified fuzzy; raw_fallback, observed 2026-05-26T00:51:27.685163Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-04T06:34:03.388597+00:00.

Observation 5c9e7e41-5e28-41b6-93f2-42f06766b6cc · outbound

This paper cites Zinc20—a free ultralarge-scale chemical database for ligand discovery.Journal of chemical information and modeling, 60(12):6065–6073.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation Zinc20—a free ultralarge-scale chemical database for ligand discovery.Journal of chemical information and modeling, 60(12):6065–6073

Reference 25

Resolution: verified fuzzy; raw_fallback, observed 2026-05-26T00:51:27.697983Z

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No event found in the named queried sources as of 2026-08-04T06:34:03.388597+00:00.

Observation a15a93d9-45f7-46cf-aced-34dba3ea25f3 · outbound

This paper cites Nonequilibrium equality for free energy differences.Physical Review Letters, 78(14):2690.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation Nonequilibrium equality for free energy differences.Physical Review Letters, 78(14):2690

Reference 26

Resolution: verified fuzzy; raw_fallback, observed 2026-05-26T00:51:27.753174Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-04T06:34:03.388597+00:00.

Observation 060500d6-db5e-4ee5-9a0e-78e0fd6164c0 · outbound

This paper cites Targeted free energy perturbation.Physical Review E, 65(4):046122.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation Targeted free energy perturbation.Physical Review E, 65(4):046122

Reference 27

Resolution: verified fuzzy; raw_fallback, observed 2026-05-26T00:51:27.760190Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-04T06:34:03.388597+00:00.

Observation 0416f9b9-ea80-4043-8d56-923692a27a61 · outbound

This paper cites Rare events and the convergence of exponentially averaged work values.Physical Review E—Statistical, Nonlinear, and Soft Matter Physics, 73(4):046105.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation Rare events and the convergence of exponentially averaged work values.Physical Review E—Statistical, Nonlinear, and Soft Matter Physics, 73(4):046105

Reference 28

Resolution: verified fuzzy; raw_fallback, observed 2026-05-26T00:51:27.763447Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-04T06:34:03.388597+00:00.

Observation 4bdd687a-fa7b-43e4-bec1-e301d462dd8d · outbound

This paper cites Alphafold meets flow matching for generating protein ensembles.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation Alphafold meets flow matching for generating protein ensembles

Reference 29

Resolution: verified fuzzy; raw_fallback, observed 2026-05-26T00:51:27.782456Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-04T06:34:03.388597+00:00.

Observation 0177ff93-89bb-4938-a1e7-d43e08d8b79f · outbound

This paper cites Deepaffinity: interpretable deep learning of compound– protein affinity through unified recurrent and convolutional neural networks.Bioinformatics, 35(18):3329–3338.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation Deepaffinity: interpretable deep learning of compound– protein affinity through unified recurrent and convolutional neural networks.Bioinformatics, 35(18):3329–3338

Reference 30

Resolution: verified fuzzy; raw_fallback, observed 2026-05-26T00:51:27.808034Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-04T06:34:03.388597+00:00.

Observation 116bdcb3-7a50-4ad3-9b4b-0f715aee6f0e · outbound

This paper cites The good, the bad, and the ugly:“hipen”, a new dataset for validating (s) qm/mm free energy simulations.Molecules, 24(4):681.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation The good, the bad, and the ugly:“hipen”, a new dataset for validating (s) qm/mm free energy simulations.Molecules, 24(4):681

Reference 31

Resolution: verified fuzzy; raw_fallback, observed 2026-05-26T00:51:27.746333Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-04T06:34:03.388597+00:00.

Observation 15d48b62-aab0-4026-a7cc-d0d3663c951d · outbound

This paper cites Statistical mechanics of fluid mixtures.The Journal of chemical physics, 3(5):300–313.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation Statistical mechanics of fluid mixtures.The Journal of chemical physics, 3(5):300–313

Reference 32

Resolution: verified fuzzy; raw_fallback, observed 2026-05-26T00:51:27.815296Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-04T06:34:03.388597+00:00.

Observation de80a1f5-003c-44b7-be3e-969ec04954a4 · outbound

This paper cites Transferable boltzmann generators.Advances in Neural Information Processing Systems, 37:45281–45314.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation Transferable boltzmann generators.Advances in Neural Information Processing Systems, 37:45281–45314

Reference 33

Resolution: verified fuzzy; raw_fallback, observed 2026-05-26T00:51:27.736465Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-04T06:34:03.388597+00:00.

Observation 2787ada5-0358-4efb-a0c6-a10f99014377 · outbound

This paper cites Generalist equivariant transformer towards 3d molecular interaction learning.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation Generalist equivariant transformer towards 3d molecular interaction learning

Reference 34

Resolution: verified fuzzy; raw_fallback, observed 2026-05-26T00:51:27.739623Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-04T06:34:03.388597+00:00.

Observation c7689243-5bad-4b0e-8b03-9d77a4796d9d · outbound

This paper cites Scalable emulation of protein equilibrium ensembles with generative deep learning.Science, page eadv9817.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation Scalable emulation of protein equilibrium ensembles with generative deep learning.Science, page eadv9817

Reference 35

Resolution: verified fuzzy; raw_fallback, observed 2026-05-26T00:51:27.788894Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-04T06:34:03.388597+00:00.

Observation 09b656ce-93ec-4ef8-a406-eda2faa6b2c3 · outbound

This paper cites Harnessing pre-trained models for accurate prediction of protein-ligand binding affinity.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation Harnessing pre-trained models for accurate prediction of protein-ligand binding affinity

Reference 36

Resolution: verified fuzzy; raw_fallback, observed 2026-05-26T00:51:27.726088Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-04T06:34:03.388597+00:00.

Observation 21261b47-8409-49bb-b42c-b7adbd5758b3 · outbound

This paper cites Flow matching for generative modeling.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation Flow matching for generative modeling

Reference 37

Resolution: verified fuzzy; raw_fallback, observed 2026-05-26T00:51:27.792447Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-04T06:34:03.388597+00:00.

Observation 4ca32ebf-b599-40db-9d87-a3384a083884 · outbound

This paper cites Molecular geometry pretraining with se (3)-invariant denoising distance matching.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation Molecular geometry pretraining with se (3)-invariant denoising distance matching

Reference 38

Resolution: verified fuzzy; raw_fallback, observed 2026-05-26T00:51:27.666769Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-04T06:34:03.388597+00:00.

Observation e54d4236-6503-43f0-98f0-155d96fbfe67 · outbound

This paper cites SGDR: Stochastic Gradient Descent with Warm Restarts.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation SGDR: Stochastic Gradient Descent with Warm Restarts

Reference 39

Resolution: verified exact; local_arxiv, observed 2026-05-11T16:36:07.835932Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-04T06:34:03.388597+00:00.

Observation 7ef3d5aa-7936-4630-bc09-b5bacbeefd06 · outbound

This paper cites Decoupled Weight Decay Regularization.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation Decoupled Weight Decay Regularization

Reference 40

Resolution: verified exact; local_arxiv, observed 2026-05-11T16:36:07.800264Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-04T06:34:03.388597+00:00.

Observation b41e02a4-ceac-41c2-ab0c-72273cb81a2d · outbound

This paper cites Solvation free energies from neural thermodynamic integration.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation Solvation free energies from neural thermodynamic integration

Reference 41

Resolution: verified fuzzy; raw_fallback, observed 2026-05-26T00:51:27.663455Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-04T06:34:03.388597+00:00.

Observation 2ff4c41c-50be-4f4c-81ff-8eac8fbab47b · outbound

This paper cites Considerations in the use of ML interaction potentials for free energy calculations.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation Considerations in the use of ML interaction potentials for free energy calculations

Reference 42

Resolution: verified exact; arxiv_id, observed 2026-05-11T16:36:07.813306Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-04T06:34:03.388597+00:00.

Observation a8d9d693-6231-45b2-93ff-4561f5fd2ab3 · outbound

This paper cites Best practices for alchemical free energy calculations [article v1.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation Best practices for alchemical free energy calculations [article v1

Reference 43

Resolution: verified fuzzy; raw_fallback, observed 2026-05-26T00:51:27.631296Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-04T06:34:03.388597+00:00.

Observation 1d66e8d9-73eb-4caa-a648-a35a0a7f0214 · outbound

This paper cites Escaping atom types in force fields using direct chemical perception.Journal of chemical theory and computation, 14(11):6076–6092.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation Escaping atom types in force fields using direct chemical perception.Journal of chemical theory and computation, 14(11):6076–6092

Reference 44

Resolution: verified fuzzy; raw_fallback, observed 2026-05-26T00:51:27.611046Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-04T06:34:03.388597+00:00.

Observation f786fe16-44e8-47aa-80bb-69e316e2db02 · outbound

This paper cites M\'at\'e, F.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation M\'at\'e, F

Reference 45

Resolution: metadata mismatch; doi, observed 2026-05-09T21:58:46.721352Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-04T06:34:03.388597+00:00.

Observation 8d3e9da0-722a-4c1c-8f23-42ac1e5c0bda · outbound

This paper cites Multiresolution graph transformers and wavelet positional encoding for learning long-range and hierarchical structures.The Journal of Chemical Physics, 159(3).

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation Multiresolution graph transformers and wavelet positional encoding for learning long-range and hierarchical structures.The Journal of Chemical Physics, 159(3)

Reference 46

Resolution: verified fuzzy; raw_fallback, observed 2026-05-26T00:51:27.607666Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-04T06:34:03.388597+00:00.

Observation 8a8f97f7-b2fa-41eb-9fe2-a19528bf8673 · outbound

This paper cites Boltzmann generators: Sampling equilibrium states of many-body systems with deep learning.Science, 365(6457):eaaw1147.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation Boltzmann generators: Sampling equilibrium states of many-body systems with deep learning.Science, 365(6457):eaaw1147

Reference 47

Resolution: verified fuzzy; raw_fallback, observed 2026-05-26T00:51:27.623817Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-04T06:34:03.388597+00:00.

Observation a50d49d0-cb60-4219-a7fd-b52857111685 · outbound

This paper cites Modification of the generalized born model suitable for macromolecules.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation Modification of the generalized born model suitable for macromolecules

Reference 48

Resolution: verified fuzzy; raw_fallback, observed 2026-05-26T00:51:27.620427Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-04T06:34:03.388597+00:00.

Observation 79929635-4f68-4676-b92e-dd123c21e72b · outbound

This paper cites Moltaut: A tool for the rapid generation of favorable tautomer in aqueous solution.Journal of Chemical Information and Modeling, 63(7):1833–1840.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation Moltaut: A tool for the rapid generation of favorable tautomer in aqueous solution.Journal of Chemical Information and Modeling, 63(7):1833–1840

Reference 49

Resolution: verified fuzzy; raw_fallback, observed 2026-05-26T00:51:27.635296Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-04T06:34:03.388597+00:00.

Observation 5ccbaafd-eec0-455f-8c76-2541b34db1df · outbound

This paper cites Fast and accurate prediction of tautomer ratios in aqueous solution via a siamese neural network.Journal of chemical theory and computation, 21(6):3132–3141.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation Fast and accurate prediction of tautomer ratios in aqueous solution via a siamese neural network.Journal of chemical theory and computation, 21(6):3132–3141

Reference 50

Resolution: verified fuzzy; raw_fallback, observed 2026-05-26T00:51:27.785650Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-04T06:34:03.388597+00:00.

Observation e1cc1960-30f3-4cbc-a202-1e499050b392 · outbound

This paper cites Variational inference with normalizing flows.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation Variational inference with normalizing flows

Reference 51

Resolution: verified fuzzy; raw_fallback, observed 2026-05-26T00:51:27.645437Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-04T06:34:03.388597+00:00.

Observation 3c26a0a6-7b0d-4945-9c6e-e3059ed4f114 · outbound

This paper cites Ppi-affinity: A web tool for the prediction and optimization of protein–peptide and protein–protein binding affinity.Journal of proteome research, 21(8):1829–1841.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation Ppi-affinity: A web tool for the prediction and optimization of protein–peptide and protein–protein binding affinity.Journal of proteome research, 21(8):1829–1841

Reference 52

Resolution: verified fuzzy; raw_fallback, observed 2026-05-26T00:51:27.732851Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-04T06:34:03.388597+00:00.

Observation c7b0910c-d5ca-466e-9263-b6e672449198 · outbound

This paper cites 2d similarity, diversity and clustering in rdkit.RDKit UGM.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation 2d similarity, diversity and clustering in rdkit.RDKit UGM

Reference 53

Resolution: verified fuzzy; raw_fallback, observed 2026-05-26T00:51:27.729208Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-04T06:34:03.388597+00:00.

Observation 93c05ca9-3bbd-494e-86e4-89f33aff83d6 · outbound

This paper cites Statistically optimal analysis of samples from multiple equilibrium states.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation Statistically optimal analysis of samples from multiple equilibrium states

Reference 54

Resolution: verified fuzzy; raw_fallback, observed 2026-05-26T00:51:27.614205Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-04T06:34:03.388597+00:00.

Observation 8ba45008-b2a5-4f42-9800-f261f3552285 · outbound

This paper cites Score- based generative modeling through stochastic differential equations.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation Score- based generative modeling through stochastic differential equations

Reference 55

Resolution: verified fuzzy; raw_fallback, observed 2026-05-26T00:51:27.603972Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-04T06:34:03.388597+00:00.

Observation 5c7f72ec-46a8-4428-9652-09c892b3d70a · outbound

This paper cites Scalable equilibrium sampling with sequential boltzmann generators.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation Scalable equilibrium sampling with sequential boltzmann generators

Reference 56

Resolution: verified fuzzy; raw_fallback, observed 2026-05-26T00:51:27.648969Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-04T06:34:03.388597+00:00.

Observation 5984c506-151e-46b8-94d9-1e5615a44f86 · outbound

This paper cites Amortized sampling with transferable normalizing flows.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation Amortized sampling with transferable normalizing flows

Reference 57

Resolution: verified fuzzy; raw_fallback, observed 2026-05-26T00:51:27.597498Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-04T06:34:03.388597+00:00.

Observation 1c2db061-bd2d-42c3-befb-ac25d516371b · outbound

This paper cites Reweighting from molecular mechanics force fields to the ani-2x neural network potential.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation Reweighting from molecular mechanics force fields to the ani-2x neural network potential

Reference 58

Resolution: verified fuzzy; raw_fallback, observed 2026-05-26T00:51:27.600760Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-04T06:34:03.388597+00:00.

Observation c247cd98-ab40-4b81-a38c-0441b612e086 · outbound

This paper cites Atom3d: Tasks on molecules in three dimensions.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation Atom3d: Tasks on molecules in three dimensions

Reference 59

Resolution: verified fuzzy; raw_fallback, observed 2026-05-26T00:51:27.617331Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-04T06:34:03.388597+00:00.

Observation 70639dda-1951-4eed-a02c-4cc38f22447d · outbound

This paper cites Scalable hierarchical self-attention with learnable hierarchy for long-range interactions.Transactions on Machine Learning Research.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation Scalable hierarchical self-attention with learnable hierarchy for long-range interactions.Transactions on Machine Learning Research

Reference 60

Resolution: verified fuzzy; raw_fallback, observed 2026-05-26T00:51:27.749855Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-04T06:34:03.388597+00:00.

Observation 7f5a62e5-6d67-4460-a6c7-34412b7eff61 · outbound

This paper cites Escorted free energy simulations: Improving convergence by reducing dissipation.Physical Review Letters, 100(19):190601.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation Escorted free energy simulations: Improving convergence by reducing dissipation.Physical Review Letters, 100(19):190601

Reference 61

Resolution: verified fuzzy; raw_fallback, observed 2026-05-26T00:51:27.638855Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-04T06:34:03.388597+00:00.

Observation edc7fb5b-958d-4074-839d-6274bfa822af · outbound

This paper cites Development and testing of a general amber force field.Journal of computational chemistry, 25(9):1157–1174.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation Development and testing of a general amber force field.Journal of computational chemistry, 25(9):1157–1174

Reference 62

Resolution: verified fuzzy; raw_fallback, observed 2026-05-26T00:51:27.795924Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-04T06:34:03.388597+00:00.

Observation 9f8288a0-29fe-48ca-9d75-a7cc92ecc5cc · outbound

This paper cites Protein conformation generation via force-guided se (3) diffusion models.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation Protein conformation generation via force-guided se (3) diffusion models

Reference 63

Resolution: verified fuzzy; raw_fallback, observed 2026-05-26T00:51:27.776427Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-04T06:34:03.388597+00:00.

Observation 850fd2c4-5e2d-4ec2-a43a-3e52d798e7d1 · outbound

This paper cites Ab initio characterization of protein molecular dynamics with ai2bmd.Nature, 635(8040): 1019–1027.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation Ab initio characterization of protein molecular dynamics with ai2bmd.Nature, 635(8040): 1019–1027

Reference 64

Resolution: verified fuzzy; raw_fallback, observed 2026-05-26T00:51:27.769911Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-04T06:34:03.388597+00:00.

Observation b35fdf8a-b22b-43de-a791-8cea7081fe8e · outbound

This paper cites Fitting quantum machine learning potentials to experimental free energy data: predicting tautomer ratios in solution.Chemical science, 12(34):11364–11381.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation Fitting quantum machine learning potentials to experimental free energy data: predicting tautomer ratios in solution.Chemical science, 12(34):11364–11381

Reference 65

Resolution: verified fuzzy; raw_fallback, observed 2026-05-26T00:51:27.773175Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-04T06:34:03.388597+00:00.

Observation 7124953c-1226-4a8d-b6b5-1b28e276188f · outbound

This paper cites Targeted free energy estimation via learned mappings.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation Targeted free energy estimation via learned mappings

Reference 66

Resolution: verified fuzzy; raw_fallback, observed 2026-05-26T00:51:27.779576Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-04T06:34:03.388597+00:00.

Observation a3ab5fd1-6813-4dea-9f57-93cdfa8e84bd · outbound

This paper cites Ppi-graphomer: enhanced protein-protein affinity prediction using pretrained and graph transformer models.BMC bioinformatics, 26(1):116.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation Ppi-graphomer: enhanced protein-protein affinity prediction using pretrained and graph transformer models.BMC bioinformatics, 26(1):116

Reference 67

Resolution: verified fuzzy; raw_fallback, observed 2026-05-26T00:51:27.718986Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-04T06:34:03.388597+00:00.

Observation 288592c1-7f82-4488-8f82-f72dfc0f1612 · outbound

This paper cites Normalizing flows are capable generative models.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation Normalizing flows are capable generative models

Reference 68

Resolution: verified fuzzy; raw_fallback, observed 2026-05-26T00:51:27.742829Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-04T06:34:03.388597+00:00.

Observation 7a2111ea-6aae-46b7-ab07-ba9cd8d6db5b · outbound

This paper cites Predicting protein-protein interactions in the human proteome.Science, 390(6771):eadt1630.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation Predicting protein-protein interactions in the human proteome.Science, 390(6771):eadt1630

Reference 69

Resolution: verified fuzzy; raw_fallback, observed 2026-05-26T00:51:27.811800Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-04T06:34:03.388597+00:00.

Observation 10c453b6-7de4-423b-8e4f-1a79bf2cc294 · outbound

This paper cites Uni-mol: A universal 3d molecular representation learning framework.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation Uni-mol: A universal 3d molecular representation learning framework

Reference 70

Resolution: verified fuzzy; raw_fallback, observed 2026-05-26T00:51:27.714876Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-04T06:34:03.388597+00:00.

Observation 1be84d64-66a3-4932-b182-43d304dfc20d · outbound

This paper cites A multi-source molecular network representation model for protein– protein interactions prediction.Scientific Reports, 14(1):6184.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation A multi-source molecular network representation model for protein– protein interactions prediction.Scientific Reports, 14(1):6184

Reference 71

Resolution: verified fuzzy; raw_fallback, observed 2026-05-26T00:51:27.705244Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-04T06:34:03.388597+00:00.

Observation 49a7b87f-9b68-4b65-a8b7-a20b48c54830 · outbound

This paper cites High-temperature equation of state by a perturbation method.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation High-temperature equation of state by a perturbation method

Reference 72

Resolution: malformed identifier; raw_fallback, observed 2026-05-26T00:51:27.691789Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-04T06:34:03.388597+00:00.

Observation 9ed499f8-f443-4dcf-9549-4a974b5a0dfd · outbound

This paper cites The learning rate is set to 1e-3.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation The learning rate is set to 1e-3

Reference 73

Resolution: verified fuzzy; raw_fallback, observed 2026-05-26T00:51:27.694924Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-04T06:34:03.388597+00:00.

Observation a61f5463-56be-4be3-8e31-2989777e3ac8 · outbound

This paper cites In this stage, we setλ1 = 1andλ 2 = 0.01, with a learning rate of 2e-4.

CARD: Coarse-to-fine Autoregressive Modeling with Radix-based Decomposition for Transferable Free Energy Estimation In this stage, we setλ1 = 1andλ 2 = 0.01, with a learning rate of 2e-4

Reference 74

Resolution: verified exact; arxiv_id, observed 2026-05-11T16:36:07.791607Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-04T06:34:03.388597+00:00.

Coverage vector

Reference resolution

Outbound references

Pith citing papers