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Paper Citation Record · LEDGER

CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models

As of 11 August 2026, this Paper Citation Record lists 47 of 47 outbound references and 0 inbound Pith citation observations for arXiv:2605.07335.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2605.07335 v1

Coverage vector

measured 47 of 47 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-05-11T01:07:26.231896Z

measured 47 of 47 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-10T06:31:04.303077+00:00

measured 0 of 0 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: cited_works

Reference resolution

47 of 47 outbound references displayed

  • verified exact22
  • verified fuzzy18
  • unresolved0
  • parse uncertain0
  • malformed identifier2
  • metadata mismatch5

External citation measurements

No source-named external measurement is stored.

Outbound references

Observation 78ccb91e-fa8f-407e-b25b-3cba647daa89 · outbound

This paper cites How to build the virtual cell with artificial intelligence: Priorities and opportunities.Cell, 187(25): 7045–7063.

CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models How to build the virtual cell with artificial intelligence: Priorities and opportunities.Cell, 187(25): 7045–7063

Reference 1

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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

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Observation 3e65df71-274a-48bf-a41c-d8736994acfd · outbound

This paper cites Towards multimodal foundation models in molecular cell biology.Nature, 640(8059):623–633.

CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models Towards multimodal foundation models in molecular cell biology.Nature, 640(8059):623–633

Reference 2

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raw_fallback, observed 2026-05-16T00:11:58.150802Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=pdf_text observed=2026-05-11T01:07:26.231896Z digest=sha256:4a053b5b63b6be03a1db3bbe3ee41aff6a53c6983ed01c973a24f1162bbe1999

Observation d9728263-923d-4208-81b8-d3a59f50ee02 · outbound

This paper cites Corsello, David D.

CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models Corsello, David D

Reference 3

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doi, observed 2026-05-11T01:15:52.137249Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

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Observation f16e74ca-5032-4033-8f4b-d5be10a356e9 · outbound

This paper cites Cellprofiler 4: improvements in speed, utility and usability.BMC bioinformatics, 22(1):433.

CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models Cellprofiler 4: improvements in speed, utility and usability.BMC bioinformatics, 22(1):433

Reference 4

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raw_fallback, observed 2026-05-16T00:11:58.154756Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=pdf_text observed=2026-05-11T01:07:26.231896Z digest=sha256:1859cb1156fc22b2fd3fd9403c434420f52431e2ceadb06fd244092717f59bb9

Observation 0d344d1f-11d6-4943-8d98-91679b46a313 · outbound

This paper cites Cell painting: a decade of discovery and innovation in cellular imaging.Nature methods, 22(2):254–268.

CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models Cell painting: a decade of discovery and innovation in cellular imaging.Nature methods, 22(2):254–268

Reference 5

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verified fuzzy
raw_fallback, observed 2026-05-16T00:11:58.146061Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=pdf_text observed=2026-05-11T01:07:26.231896Z digest=sha256:88d7fbf1fd8350ff7a7045cef29230da8b2dd7ab50fa4e9052dc32083fd9dd82

Observation 02a7df83-09ba-478b-b5c7-688e7a2efc37 · outbound

This paper cites Bernn: Enhancing classification of liquid chromatography mass spectrometry data with batch effect removal neural networks.Nature Communications, 15(1):3777.

CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models Bernn: Enhancing classification of liquid chromatography mass spectrometry data with batch effect removal neural networks.Nature Communications, 15(1):3777

Reference 6

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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=pdf_text observed=2026-05-11T01:07:26.231896Z digest=sha256:19eb0d2849724c021e7d85f5f38ced1e56ac58df0b5da6369c22e08b678d4b0f

Observation ede7c507-6159-4cbf-9e7e-067e3a9b0e30 · outbound

This paper cites divide-and-conquer.

CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models divide-and-conquer

Reference 7

Resolution
metadata mismatch
doi, observed 2026-05-11T01:15:52.126960Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=pdf_text observed=2026-05-11T01:07:26.231896Z digest=sha256:3d9fe3232293ea2a0f00394d9afd3ddd28897097965288501aba225d4a1fe1dc

Observation bc27bcdd-7a08-4f79-a1fd-9c65629bd37f · outbound

This paper cites Lim, Kaishu Mason, Clara Morral Martinez, Sijia Huang, E.

CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models Lim, Kaishu Mason, Clara Morral Martinez, Sijia Huang, E

Reference 8

Resolution
verified exact
doi, observed 2026-05-11T01:15:52.129309Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=pdf_text observed=2026-05-11T01:07:26.231896Z digest=sha256:82671618d3425116a68953abdf6e9f683b4882301d5c6ae9dfec9bf6118873b5

Observation 65fff8bf-cb78-427c-a404-1b0d5cf10e62 · outbound

This paper cites BioMARS: A Multi-Agent Robotic System for Autonomous Biological Experiments.

CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models BioMARS: A Multi-Agent Robotic System for Autonomous Biological Experiments

Reference 9

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arxiv_id, observed 2026-05-11T04:45:56.577682Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=pdf_text observed=2026-05-11T01:07:26.231896Z digest=sha256:afa86061d5ff51d2eb65058c9db3dbea420c3735b4c80ed8adf2b0bb1b9c4bd8

Observation 5409a632-8f64-4a38-b4fa-95bb6364f110 · outbound

This paper cites Spatialagent: An autonomous ai agent for spatial biology.bioRxiv, pages 2025–04.

CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models Spatialagent: An autonomous ai agent for spatial biology.bioRxiv, pages 2025–04

Reference 10

Resolution
verified exact
doi, observed 2026-05-11T01:15:52.131808Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=pdf_text observed=2026-05-11T01:07:26.231896Z digest=sha256:d45036c33c964e8b5b23b44051da3ca6abd30e029842685a09dac1c4aab12d91

Observation dfa88f0c-ff74-4250-811f-52052594c292 · outbound

This paper cites Wilk, and James Zou.

CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models Wilk, and James Zou

Reference 11

Resolution
verified exact
doi, observed 2026-05-11T01:15:52.134107Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=pdf_text observed=2026-05-11T01:07:26.231896Z digest=sha256:fc7ffc46fb355d76c9a226c990581797b3ac797d5698c004ebbf3e05ee8682c0

Observation 1aa6320a-746f-4fce-a4c7-58edcc3cf882 · outbound

This paper cites Cellforge: Agentic design of virtual cell models.

CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models Cellforge: Agentic design of virtual cell models

Reference 12

Resolution
verified exact
arxiv_id, observed 2026-05-11T04:45:56.547475Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=pdf_text observed=2026-05-11T01:07:26.231896Z digest=sha256:d760201df7265a1faa9aed4de8ff696c346543d210aa8662837b4e0c1cad2b15

Observation d5c2d88f-7498-4881-96ff-d73d548fbba3 · outbound

This paper cites Vcworld: A biological world model for virtual cell simulation.

CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models Vcworld: A biological world model for virtual cell simulation

Reference 13

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raw_fallback, observed 2026-05-16T00:11:58.103256Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=pdf_text observed=2026-05-11T01:07:26.231896Z digest=sha256:be2e0982f4f87d9566b9eb1c6251ea3b37b3e69b18ee67b0c0ceb29c8863307a

Observation 62a73617-a956-4e22-8fe2-61a28587aa3f · outbound

This paper cites Miller, Matthew Greenig, Benjamin Tenmann, and Bo Wang.

CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models Miller, Matthew Greenig, Benjamin Tenmann, and Bo Wang

Reference 14

Resolution
metadata mismatch
doi, observed 2026-05-11T01:15:52.163003Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=pdf_text observed=2026-05-11T01:07:26.231896Z digest=sha256:86e96a647d361b0d195755ec8ae26654c1b59ad951c5be75f7a93b691c0ccab7

Observation 70392bc8-573d-456f-aaaf-417787b1c0ca · outbound

This paper cites FIRE-Bench: Evaluating AI Agents on the Rediscovery of Scientific Insights.

CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models FIRE-Bench: Evaluating AI Agents on the Rediscovery of Scientific Insights

Reference 15

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arxiv_id, observed 2026-07-14T01:19:58.512370Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=pdf_text observed=2026-05-11T01:07:26.231896Z digest=sha256:d9a5948b3653342657a8801c917f1698527bc74554d6f0b9691331b1af51d9c9

Observation 5ad1c051-28d6-42b0-8049-6a2fa59abcee · outbound

This paper cites GenCellAgent: Generalizable, Training-Free Cellular Image Segmentation via Large Language Model Agents.

CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models GenCellAgent: Generalizable, Training-Free Cellular Image Segmentation via Large Language Model Agents

Reference 16

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verified exact
arxiv_id, observed 2026-05-12T01:43:48.474618Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=pdf_text observed=2026-05-11T01:07:26.231896Z digest=sha256:1305a03b54c69dda539ee36eb2e4b3874ffeec487e0ba0839be40a62abdf4e42

Observation 63da5af7-0d7e-44de-a13d-17483ecd9a96 · outbound

This paper cites Atlasagent: Vision language model and agent- guided framework for evaluation of atlas-scale single-cell integration.bioRxiv.

CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models Atlasagent: Vision language model and agent- guided framework for evaluation of atlas-scale single-cell integration.bioRxiv

Reference 17

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verified exact
doi, observed 2026-05-11T01:15:52.157625Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=pdf_text observed=2026-05-11T01:07:26.231896Z digest=sha256:ae575c06be1651c94da9d1b9d96e810d16b6c8643fc8f2cf9dee5db966cd72d5

Observation 8cc4e294-dffe-4a43-8917-4a75826ac545 · outbound

This paper cites Arjona-Medina, Michael Gillhofer, Michael Widrich, Thomas Unterthiner, Johannes Brandstetter, and Sepp Hochreiter.

CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models Arjona-Medina, Michael Gillhofer, Michael Widrich, Thomas Unterthiner, Johannes Brandstetter, and Sepp Hochreiter

Reference 18

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raw_fallback, observed 2026-05-16T00:11:58.116338Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=pdf_text observed=2026-05-11T01:07:26.231896Z digest=sha256:ae8e5e9b94190c55abee4a998a8cf51f218e9a7f534a17443d84d0f627d9590c

Observation f870153b-a633-41ca-a699-d13610bf72b0 · outbound

This paper cites Predicting transcriptional responses to novel chemical perturbations using deep generative model for drug discovery.Nature Communications, 15(1):9256.

CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models Predicting transcriptional responses to novel chemical perturbations using deep generative model for drug discovery.Nature Communications, 15(1):9256

Reference 19

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raw_fallback, observed 2026-05-16T00:11:58.124892Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=pdf_text observed=2026-05-11T01:07:26.231896Z digest=sha256:b7fe9e3f60c058bc39c06ef2c24826c53dcfbebf432e37f38f6a2b3f26c85570

Observation aefdec79-2a72-479d-a143-6cd6b4abd79d · outbound

This paper cites The AI Scientist: Towards Fully Automated Open-Ended Scientific Discovery.

CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models The AI Scientist: Towards Fully Automated Open-Ended Scientific Discovery

Reference 21

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local_arxiv, observed 2026-05-11T04:45:56.528942Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=pdf_text observed=2026-05-11T01:07:26.231896Z digest=sha256:733b7f0b9c72648e7c9508e6b14b8e88a7627c7a1e3a9108eb368b072e5b3980

Observation a0cbc57a-bf49-4206-b2aa-c1580d5e24aa · outbound

This paper cites AIDE: AI-Driven Exploration in the Space of Code.

CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models AIDE: AI-Driven Exploration in the Space of Code

Reference 22

Resolution
verified exact
arxiv_id, observed 2026-05-17T18:22:30.071006Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=pdf_text observed=2026-05-11T01:07:26.231896Z digest=sha256:cec3a4b8f1eb7399448aef8970d4b03313cd8cededcb9f8d6839347aedd1260a

Observation 121288c7-b6c1-411a-b19c-169802764a39 · outbound

This paper cites TusoAI: Agentic Optimization for Scientific Methods.

CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models TusoAI: Agentic Optimization for Scientific Methods

Reference 23

Resolution
verified exact
arxiv_id, observed 2026-05-20T00:02:55.804523Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=pdf_text observed=2026-05-11T01:07:26.231896Z digest=sha256:d05cc2a9401d19983cbda186344e6c9e56c3c6f101fa20f7acc85fe2481cbb01

Observation 4eba06b8-cb36-41a2-9b1b-95952c36f966 · outbound

This paper cites MiroThinker: Pushing the Performance Boundaries of Open-Source Research Agents via Model, Context, and Interactive Scaling.

CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models MiroThinker: Pushing the Performance Boundaries of Open-Source Research Agents via Model, Context, and Interactive Scaling

Reference 24

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local_arxiv, observed 2026-05-11T04:45:56.555500Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=pdf_text observed=2026-05-11T01:07:26.231896Z digest=sha256:3fd33ee054832f365c07014e9963b25123d5c242b26d3cc16fbc7d3ec6ef48fb

Observation 25aaf1bc-2fb9-478f-9393-f81e7b3b7733 · outbound

This paper cites Agent laboratory: Using llm agents as research assistants.Findings of the Association for Computational Linguistics: EMNLP 2025, pages 5977–6043.

CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models Agent laboratory: Using llm agents as research assistants.Findings of the Association for Computational Linguistics: EMNLP 2025, pages 5977–6043

Reference 25

Resolution
verified fuzzy
raw_fallback, observed 2026-05-16T00:11:58.107730Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=pdf_text observed=2026-05-11T01:07:26.231896Z digest=sha256:736e3ee44593b6fbe4f4542768eb519612ab03380e11fde2ea7651fb8d1b69f7

Observation a65a1ebd-7d7d-4e69-bb9b-b5baf5ac2640 · outbound

This paper cites The AI Scientist-v2: Workshop-Level Automated Scientific Discovery via Agentic Tree Search.

CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models The AI Scientist-v2: Workshop-Level Automated Scientific Discovery via Agentic Tree Search

Reference 26

Resolution
verified exact
local_arxiv, observed 2026-05-11T04:45:56.509571Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=pdf_text observed=2026-05-11T01:07:26.231896Z digest=sha256:ed8e362c705b5a7bee11c41e134f77bade0202993c4000e495937a449fbbc647

Observation 09aa2d45-5fa6-432f-b8ad-ce42d3a0e89a · outbound

This paper cites Externalization in LLM Agents: A Unified Review of Memory, Skills, Protocols and Harness Engineering.

CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models Externalization in LLM Agents: A Unified Review of Memory, Skills, Protocols and Harness Engineering

Reference 27

Resolution
verified exact
local_arxiv, observed 2026-05-11T04:45:56.487125Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=pdf_text observed=2026-05-11T01:07:26.231896Z digest=sha256:fb88c9ac02b198edc53fadf27cba2ea29bb7aedf1fd3ccda25419c1551744f4c

Observation 630e77a4-ebcf-411f-948b-b22c3fc415dc · outbound

This paper cites Agent-sama: State-aware mobile assistant.

CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models Agent-sama: State-aware mobile assistant

Reference 28

Resolution
verified fuzzy
raw_fallback, observed 2026-05-16T00:11:58.079519Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=pdf_text observed=2026-05-11T01:07:26.231896Z digest=sha256:30d8b33d481236ec2dd8f2936aca2ed9b77e60457fc49eb90dce7cbea2c9fd77

Observation aae3f07d-f0ff-4fbc-9c7a-efb29fbd1d63 · outbound

This paper cites Graphplanner: Graph memory-augmented agentic routing for multi-agent llms.

CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models Graphplanner: Graph memory-augmented agentic routing for multi-agent llms

Reference 29

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raw_fallback, observed 2026-05-16T00:11:58.112009Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=pdf_text observed=2026-05-11T01:07:26.231896Z digest=sha256:2fe6dfc2ed7bfb194e40b16e8061ee88817e89533e79754f681d6371f5451df1

Observation 1ef7dd1a-3294-425f-bc8b-499e28205ca9 · outbound

This paper cites Agentic lab: An agentic-physical ai system for cell and organoid experimentation and manufacturing.bioRxiv.

CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models Agentic lab: An agentic-physical ai system for cell and organoid experimentation and manufacturing.bioRxiv

Reference 30

Resolution
verified exact
doi, observed 2026-05-11T01:15:52.160224Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=pdf_text observed=2026-05-11T01:07:26.231896Z digest=sha256:f2bf7bfd17f88a4581de94ed948513bc07febebfb0a1656ff6b41958260ea325

Observation 7c6094ac-45e2-4719-a42a-31a65e68683d · outbound

This paper cites High-content phenotypic profiling of drug response signatures across distinct cancer cells.Molecular cancer therapeutics, 9(6):1913–1926.

CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models High-content phenotypic profiling of drug response signatures across distinct cancer cells.Molecular cancer therapeutics, 9(6):1913–1926

Reference 31

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raw_fallback, observed 2026-05-16T00:11:58.137492Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=pdf_text observed=2026-05-11T01:07:26.231896Z digest=sha256:eea3be6820f3c4d1417fc0420a7d960c24c184df144b028394d9d963ba106097

Observation 1deb5de9-671a-476a-994f-1fa39a82a1e6 · outbound

This paper cites High-dimensional gene expression and morphology profiles of cells across 28,000 genetic and chemical perturbations.Nature methods, 19(12):1550–1557.

CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models High-dimensional gene expression and morphology profiles of cells across 28,000 genetic and chemical perturbations.Nature methods, 19(12):1550–1557

Reference 32

Resolution
verified fuzzy
raw_fallback, observed 2026-05-16T00:11:58.141676Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

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Observation 936cfc07-786e-4634-9dd6-fb7182ccd9d8 · outbound

This paper cites 534023, arXiv:https://www.biorxiv.org/content/early/2023/03/27/2023.03.23.534023.full.pdf, doi:10.1101/2023.03.23.534023.

CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models 534023, arXiv:https://www.biorxiv.org/content/early/2023/03/27/2023.03.23.534023.full.pdf, doi:10.1101/2023.03.23.534023

Reference 33

Resolution
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doi, observed 2026-05-11T01:15:52.165204Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

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Observation d8d2098c-54cc-480b-9fba-49f1d3a0a78b · outbound

This paper cites Phenoprofiler: advancing phenotypic learning for image-based drug discovery.Nature Communications.

CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models Phenoprofiler: advancing phenotypic learning for image-based drug discovery.Nature Communications

Reference 34

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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

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Observation e2ad2157-5eee-4a05-9c24-871e18b89707 · outbound

This paper cites Tabr: Tabular deep learning meets nearest neighbors.

CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models Tabr: Tabular deep learning meets nearest neighbors

Reference 35

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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

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Observation e4e8aeea-257e-4e13-b33f-404dbc62b6be · outbound

This paper cites Better by default: Strong pre-tuned mlps and boosted trees on tabular data.Advances in Neural Information Processing Systems, 37:26577–26658.

CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models Better by default: Strong pre-tuned mlps and boosted trees on tabular data.Advances in Neural Information Processing Systems, 37:26577–26658

Reference 36

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verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

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Observation 6d9e97fa-7896-4e28-a04c-835038b08d00 · outbound

This paper cites Flaml: A fast and lightweight automl library.

CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models Flaml: A fast and lightweight automl library

Reference 37

Resolution
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

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Observation 89e8306b-1607-468b-a77a-4e642d2d8bd1 · outbound

This paper cites Amlb: an automl benchmark.Journal of Machine Learning Research, 25(101):1–65.

CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models Amlb: an automl benchmark.Journal of Machine Learning Research, 25(101):1–65

Reference 38

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

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Observation 126fd118-b774-4da7-8f2a-cda6e93e48bd · outbound

This paper cites Kuleshov, et al.

CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models Kuleshov, et al

Reference 39

Resolution
verified exact
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

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Observation 293800df-4d67-4e5d-a004-64defef0b733 · outbound

This paper cites Prediction of drug efficacy from transcriptional profiles with deep learning.Nature biotechnology, 39(11):1444–1452.

CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models Prediction of drug efficacy from transcriptional profiles with deep learning.Nature biotechnology, 39(11):1444–1452

Reference 40

Resolution
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

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Observation b577bfc5-00f9-4694-a2f5-10e12493139e · outbound

This paper cites an unresolved cited work.

CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models Unresolved cited work

Reference 41

Resolution
verified exact
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

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Observation 4ade67be-582a-41fa-bb56-f967beea5a35 · outbound

This paper cites Chemical-induced gene expression ranking and its application to pancreatic cancer drug repurposing.Patterns, 3(4):100441.

CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models Chemical-induced gene expression ranking and its application to pancreatic cancer drug repurposing.Patterns, 3(4):100441

Reference 42

Resolution
metadata mismatch
arxiv_id, observed 2026-05-11T01:15:52.144899Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

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Observation 398b5026-04ce-40f4-a7f5-38599d557281 · outbound

This paper cites an unresolved cited work.

CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models Unresolved cited work

Reference 43

Resolution
verified exact
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

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Observation fbf2290d-ccc7-4286-9ff8-bccbb760224d · outbound

This paper cites Deep representation learning of chemical- induced transcriptional profile for phenotype-based drug discovery.Nature Communications, 15(1):5378.

CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models Deep representation learning of chemical- induced transcriptional profile for phenotype-based drug discovery.Nature Communications, 15(1):5378

Reference 44

Resolution
verified exact
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

source=pdf_text observed=2026-05-11T01:07:26.231896Z digest=sha256:012634e04553535852c5f02f3d67f7825df48fd33a8f9b6e9b019d69f3cab265

Observation 9003e53e-203e-48a2-afbe-80daa084c152 · outbound

This paper cites Norman, Max A.

CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models Norman, Max A

Reference 45

Resolution
malformed identifier
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

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Observation 04c50230-05fc-4a18-bb35-0844c8140903 · outbound

This paper cites an unresolved cited work.

CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models Unresolved cited work

Reference 46

Resolution
verified exact
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

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Observation cdd3e7b5-c5f4-42a2-8010-6a3b943b8a42 · outbound

This paper cites Characterizing the molec- ular regulation of inhibitory immune checkpoints with multimodal single-cell screens.

CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models Characterizing the molec- ular regulation of inhibitory immune checkpoints with multimodal single-cell screens

Reference 47

Resolution
verified exact
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

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Observation 9ef75495-331b-43f6-bc9f-2a129103d262 · outbound

This paper cites dataset".

CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models dataset"

Reference 48

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verified exact
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

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Pith citing papers

No inbound Pith citation observations are available.