Typed states for the displayed outbound observations.
Source: paper_references, paper_reference_links, observed 2026-05-11T01:07:26.231896Z
Paper Citation Record · LEDGER
As of 11 August 2026, this Paper Citation Record lists 47 of 47 outbound references and 0 inbound Pith citation observations for arXiv:2605.07335.
A citation records a reference. It does not transfer a finding from one paper to another.
Typed states for the displayed outbound observations.
Source: paper_references, paper_reference_links, observed 2026-05-11T01:07:26.231896Z
One-hop event checks from named stored sources.
Source: scholarly_work_events, retraction_status_cache, observed 2026-08-10T06:31:04.303077+00:00
Pith citing papers itemized under the disclosed page cap.
Source: paper_references, paper_reference_links
A source-named dated measurement, never combined with another source.
Source: cited_works
47 of 47 outbound references displayed
External citation measurements
No source-named external measurement is stored.
Observation 78ccb91e-fa8f-407e-b25b-3cba647daa89 · outbound
CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models How to build the virtual cell with artificial intelligence: Priorities and opportunities.Cell, 187(25): 7045–7063
Reference 1
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.
Observation 3e65df71-274a-48bf-a41c-d8736994acfd · outbound
CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models Towards multimodal foundation models in molecular cell biology.Nature, 640(8059):623–633
Reference 2
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.
Observation d9728263-923d-4208-81b8-d3a59f50ee02 · outbound
CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models Corsello, David D
Reference 3
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.
Observation f16e74ca-5032-4033-8f4b-d5be10a356e9 · outbound
CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models Cellprofiler 4: improvements in speed, utility and usability.BMC bioinformatics, 22(1):433
Reference 4
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.
Observation 0d344d1f-11d6-4943-8d98-91679b46a313 · outbound
CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models Cell painting: a decade of discovery and innovation in cellular imaging.Nature methods, 22(2):254–268
Reference 5
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.
Observation 02a7df83-09ba-478b-b5c7-688e7a2efc37 · outbound
CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models Bernn: Enhancing classification of liquid chromatography mass spectrometry data with batch effect removal neural networks.Nature Communications, 15(1):3777
Reference 6
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.
Observation ede7c507-6159-4cbf-9e7e-067e3a9b0e30 · outbound
CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models divide-and-conquer
Reference 7
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.
Observation bc27bcdd-7a08-4f79-a1fd-9c65629bd37f · outbound
CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models Lim, Kaishu Mason, Clara Morral Martinez, Sijia Huang, E
Reference 8
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.
Observation 65fff8bf-cb78-427c-a404-1b0d5cf10e62 · outbound
CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models BioMARS: A Multi-Agent Robotic System for Autonomous Biological Experiments
Reference 9
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.
Observation 5409a632-8f64-4a38-b4fa-95bb6364f110 · outbound
CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models Spatialagent: An autonomous ai agent for spatial biology.bioRxiv, pages 2025–04
Reference 10
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.
Observation dfa88f0c-ff74-4250-811f-52052594c292 · outbound
CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models Wilk, and James Zou
Reference 11
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.
Observation 1aa6320a-746f-4fce-a4c7-58edcc3cf882 · outbound
CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models Cellforge: Agentic design of virtual cell models
Reference 12
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.
Observation d5c2d88f-7498-4881-96ff-d73d548fbba3 · outbound
CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models Vcworld: A biological world model for virtual cell simulation
Reference 13
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.
Observation 62a73617-a956-4e22-8fe2-61a28587aa3f · outbound
CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models Miller, Matthew Greenig, Benjamin Tenmann, and Bo Wang
Reference 14
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.
Observation 70392bc8-573d-456f-aaaf-417787b1c0ca · outbound
CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models FIRE-Bench: Evaluating AI Agents on the Rediscovery of Scientific Insights
Reference 15
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.
Observation 5ad1c051-28d6-42b0-8049-6a2fa59abcee · outbound
CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models GenCellAgent: Generalizable, Training-Free Cellular Image Segmentation via Large Language Model Agents
Reference 16
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.
Observation 63da5af7-0d7e-44de-a13d-17483ecd9a96 · outbound
CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models Atlasagent: Vision language model and agent- guided framework for evaluation of atlas-scale single-cell integration.bioRxiv
Reference 17
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.
Observation 8cc4e294-dffe-4a43-8917-4a75826ac545 · outbound
CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models Arjona-Medina, Michael Gillhofer, Michael Widrich, Thomas Unterthiner, Johannes Brandstetter, and Sepp Hochreiter
Reference 18
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.
Observation f870153b-a633-41ca-a699-d13610bf72b0 · outbound
CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models Predicting transcriptional responses to novel chemical perturbations using deep generative model for drug discovery.Nature Communications, 15(1):9256
Reference 19
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.
Observation aefdec79-2a72-479d-a143-6cd6b4abd79d · outbound
CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models The AI Scientist: Towards Fully Automated Open-Ended Scientific Discovery
Reference 21
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.
Observation a0cbc57a-bf49-4206-b2aa-c1580d5e24aa · outbound
CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models AIDE: AI-Driven Exploration in the Space of Code
Reference 22
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.
Observation 121288c7-b6c1-411a-b19c-169802764a39 · outbound
CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models TusoAI: Agentic Optimization for Scientific Methods
Reference 23
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.
Observation 4eba06b8-cb36-41a2-9b1b-95952c36f966 · outbound
CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models MiroThinker: Pushing the Performance Boundaries of Open-Source Research Agents via Model, Context, and Interactive Scaling
Reference 24
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.
Observation 25aaf1bc-2fb9-478f-9393-f81e7b3b7733 · outbound
CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models Agent laboratory: Using llm agents as research assistants.Findings of the Association for Computational Linguistics: EMNLP 2025, pages 5977–6043
Reference 25
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.
Observation a65a1ebd-7d7d-4e69-bb9b-b5baf5ac2640 · outbound
CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models The AI Scientist-v2: Workshop-Level Automated Scientific Discovery via Agentic Tree Search
Reference 26
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.
Observation 09aa2d45-5fa6-432f-b8ad-ce42d3a0e89a · outbound
CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models Externalization in LLM Agents: A Unified Review of Memory, Skills, Protocols and Harness Engineering
Reference 27
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.
Observation 630e77a4-ebcf-411f-948b-b22c3fc415dc · outbound
CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models Agent-sama: State-aware mobile assistant
Reference 28
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.
Observation aae3f07d-f0ff-4fbc-9c7a-efb29fbd1d63 · outbound
CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models Graphplanner: Graph memory-augmented agentic routing for multi-agent llms
Reference 29
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.
Observation 1ef7dd1a-3294-425f-bc8b-499e28205ca9 · outbound
CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models Agentic lab: An agentic-physical ai system for cell and organoid experimentation and manufacturing.bioRxiv
Reference 30
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.
Observation 7c6094ac-45e2-4719-a42a-31a65e68683d · outbound
CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models High-content phenotypic profiling of drug response signatures across distinct cancer cells.Molecular cancer therapeutics, 9(6):1913–1926
Reference 31
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.
Observation 1deb5de9-671a-476a-994f-1fa39a82a1e6 · outbound
CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models High-dimensional gene expression and morphology profiles of cells across 28,000 genetic and chemical perturbations.Nature methods, 19(12):1550–1557
Reference 32
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.
Observation 936cfc07-786e-4634-9dd6-fb7182ccd9d8 · outbound
CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models 534023, arXiv:https://www.biorxiv.org/content/early/2023/03/27/2023.03.23.534023.full.pdf, doi:10.1101/2023.03.23.534023
Reference 33
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.
Observation d8d2098c-54cc-480b-9fba-49f1d3a0a78b · outbound
CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models Phenoprofiler: advancing phenotypic learning for image-based drug discovery.Nature Communications
Reference 34
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.
Observation e2ad2157-5eee-4a05-9c24-871e18b89707 · outbound
CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models Tabr: Tabular deep learning meets nearest neighbors
Reference 35
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.
Observation e4e8aeea-257e-4e13-b33f-404dbc62b6be · outbound
CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models Better by default: Strong pre-tuned mlps and boosted trees on tabular data.Advances in Neural Information Processing Systems, 37:26577–26658
Reference 36
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.
Observation 6d9e97fa-7896-4e28-a04c-835038b08d00 · outbound
CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models Flaml: A fast and lightweight automl library
Reference 37
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.
Observation 89e8306b-1607-468b-a77a-4e642d2d8bd1 · outbound
CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models Amlb: an automl benchmark.Journal of Machine Learning Research, 25(101):1–65
Reference 38
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.
Observation 126fd118-b774-4da7-8f2a-cda6e93e48bd · outbound
CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models Kuleshov, et al
Reference 39
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.
Observation 293800df-4d67-4e5d-a004-64defef0b733 · outbound
CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models Prediction of drug efficacy from transcriptional profiles with deep learning.Nature biotechnology, 39(11):1444–1452
Reference 40
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.
Observation b577bfc5-00f9-4694-a2f5-10e12493139e · outbound
CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models Unresolved cited work
Reference 41
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.
Observation 4ade67be-582a-41fa-bb56-f967beea5a35 · outbound
CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models Chemical-induced gene expression ranking and its application to pancreatic cancer drug repurposing.Patterns, 3(4):100441
Reference 42
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.
Observation 398b5026-04ce-40f4-a7f5-38599d557281 · outbound
CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models Unresolved cited work
Reference 43
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.
Observation fbf2290d-ccc7-4286-9ff8-bccbb760224d · outbound
CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models Deep representation learning of chemical- induced transcriptional profile for phenotype-based drug discovery.Nature Communications, 15(1):5378
Reference 44
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.
Observation 9003e53e-203e-48a2-afbe-80daa084c152 · outbound
CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models Norman, Max A
Reference 45
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.
Observation 04c50230-05fc-4a18-bb35-0844c8140903 · outbound
CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models Unresolved cited work
Reference 46
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.
Observation cdd3e7b5-c5f4-42a2-8010-6a3b943b8a42 · outbound
CellScientist: Dual-Space Hierarchical Orchestration for Closed-Loop Refinement of Virtual Cell Models Characterizing the molec- ular regulation of inhibitory immune checkpoints with multimodal single-cell screens
Reference 47
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.
Observation 9ef75495-331b-43f6-bc9f-2a129103d262 · outbound
Reference 48
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.
No inbound Pith citation observations are available.