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Paper Citation Record · LEDGER

BioDefect: The First Dataset for Defect Detection in Bioinformatics Software

As of 13 August 2026, this Paper Citation Record lists 56 of 56 outbound references and 0 inbound Pith citation observations for arXiv:2605.20788.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2605.20788 v1

Coverage vector

measured 56 of 56 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-05-21T04:11:16.231567Z

measured 56 of 56 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-13T06:32:02.005865+00:00

measured 0 of 0 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: cited_works

Reference resolution

56 of 56 outbound references displayed

  • verified exact30
  • verified fuzzy2
  • unresolved12
  • parse uncertain0
  • malformed identifier0
  • metadata mismatch12

External citation measurements

No source-named external measurement is stored.

Outbound references

Observation bec077d7-00db-479c-ab81-a0d0fcb9956e · outbound

This paper cites an unresolved cited work.

BioDefect: The First Dataset for Defect Detection in Bioinformatics Software Unresolved cited work

Reference 1

Resolution
verified exact
doi, observed 2026-05-21T04:13:56.452332Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

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Observation 10c368a8-fd91-48aa-a940-d51cbd998a78 · outbound

This paper cites an unresolved cited work.

BioDefect: The First Dataset for Defect Detection in Bioinformatics Software Unresolved cited work

Reference 2

Resolution
verified exact
arxiv_id, observed 2026-05-21T04:13:56.443905Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

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Observation aa76bc1e-26c8-478f-b6ff-cfc7728d3c92 · outbound

This paper cites an unresolved cited work.

BioDefect: The First Dataset for Defect Detection in Bioinformatics Software Unresolved cited work

Reference 3

Resolution
verified exact
doi, observed 2026-05-21T04:13:56.490890Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

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Observation 357846f2-0c9a-4ebe-b94a-90f196981780 · outbound

This paper cites an unresolved cited work.

BioDefect: The First Dataset for Defect Detection in Bioinformatics Software Unresolved cited work

Reference 4

Resolution
verified exact
doi, observed 2026-05-21T04:13:56.438383Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

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Observation cb1f62e6-1616-4c03-9a6c-6603bfa1dc3d · outbound

This paper cites an unresolved cited work.

BioDefect: The First Dataset for Defect Detection in Bioinformatics Software Unresolved cited work

Reference 5

Resolution
unresolved
raw_fallback, observed 2026-05-21T04:13:57.266454Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-05-21T04:11:16.231567Z digest=sha256:5281b8bfd711751659eecd0bd2b610821f1c7156666e06fa53d1a78f5bad81a3

Observation d815cbae-e528-4207-bb81-3a92b0b8bbad · outbound

This paper cites an unresolved cited work.

BioDefect: The First Dataset for Defect Detection in Bioinformatics Software Unresolved cited work

Reference 6

Resolution
unresolved
raw_fallback, observed 2026-05-21T04:13:57.268224Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-05-21T04:11:16.231567Z digest=sha256:b2c2fc5372d453c28e6a28006fe920bca910304f1a1f0b948fdc91db2709543d

Observation bfcd56dc-91e9-47ab-a0ef-e09aa3db9011 · outbound

This paper cites an unresolved cited work.

BioDefect: The First Dataset for Defect Detection in Bioinformatics Software Unresolved cited work

Reference 7

Resolution
unresolved
raw_fallback, observed 2026-05-21T04:13:57.270253Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-05-21T04:11:16.231567Z digest=sha256:7fe6dbb9f141b0fd13431cbaead0e02db7f3ef7db25b81c8e48a064b3834be35

Observation 207a2fec-c3d9-4936-bcbe-5ca7131003aa · outbound

This paper cites Do Language Models Learn Semantics of Code? A Case Study in Vulnerability Detection.

BioDefect: The First Dataset for Defect Detection in Bioinformatics Software Do Language Models Learn Semantics of Code? A Case Study in Vulnerability Detection

Reference 8

Resolution
verified exact
arxiv_id, observed 2026-05-21T04:13:56.717725Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-05-21T04:11:16.231567Z digest=sha256:38ad154aef4b7731701e7b8dbd2575de9601084dd94cb8b3b0ae832a61b4d472

Observation aa2bcdf3-44d7-454a-bde5-cfe4064824d1 · outbound

This paper cites an unresolved cited work.

BioDefect: The First Dataset for Defect Detection in Bioinformatics Software Unresolved cited work

Reference 9

Resolution
unresolved
raw_fallback, observed 2026-05-21T04:13:57.272104Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-05-21T04:11:16.231567Z digest=sha256:14db2ccf4f49091e8eb8cf564143ef0955878f1db32bd077fa413dca196bcc40

Observation 3ee7aea2-cb57-439f-8a21-ff1391d4cbb0 · outbound

This paper cites In Proceedings of the Proceedings of the 2023 Conference on Empirical Methods in Natural Language Processing, December, 2023, Singapore.

BioDefect: The First Dataset for Defect Detection in Bioinformatics Software In Proceedings of the Proceedings of the 2023 Conference on Empirical Methods in Natural Language Processing, December, 2023, Singapore

Reference 10

Resolution
verified exact
doi, observed 2026-05-21T04:13:56.462564Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-05-21T04:11:16.231567Z digest=sha256:ababea42942120da68c2a1fa1c96be732d8199d64120d9e84d26e96dcb3b838e

Observation 2375dbfd-78b4-4666-a03e-1cd57c0104ce · outbound

This paper cites Deep learning based vulnerability detection: Are we there yet?.

BioDefect: The First Dataset for Defect Detection in Bioinformatics Software Deep learning based vulnerability detection: Are we there yet?

Reference 11

Resolution
verified exact
arxiv_id, observed 2026-05-21T04:13:56.463245Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-05-21T04:11:16.231567Z digest=sha256:8b04d1d7a88571647ff5b6cd3c90543ea3efc2984ac132a6eba99485d463a54a

Observation 65f829a7-1a82-4fa6-b50f-83f86261e6a0 · outbound

This paper cites DeepSeek-R1: Incentivizing Reasoning Capability in LLMs via Reinforcement Learning.

BioDefect: The First Dataset for Defect Detection in Bioinformatics Software DeepSeek-R1: Incentivizing Reasoning Capability in LLMs via Reinforcement Learning

Reference 12

Resolution
verified exact
local_arxiv, observed 2026-05-21T04:13:56.714321Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-05-21T04:11:16.231567Z digest=sha256:62f7956e6b39fc45697e671e19161610e2d330974e58e3ac519c65c1af029891

Observation 781a4d03-025a-4db3-973c-60725366eed5 · outbound

This paper cites StarCoder 2 and The Stack v2: The Next Generation.

BioDefect: The First Dataset for Defect Detection in Bioinformatics Software StarCoder 2 and The Stack v2: The Next Generation

Reference 13

Resolution
metadata mismatch
local_arxiv, observed 2026-05-21T04:13:56.707727Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-05-21T04:11:16.231567Z digest=sha256:878ddce5b79205d72ab2082d7b53c9ca2e2d1f0972112f83d9955fa8a509d9fd

Observation 05480b8d-6635-4a56-bd52-ef6e7d61f829 · outbound

This paper cites an unresolved cited work.

BioDefect: The First Dataset for Defect Detection in Bioinformatics Software Unresolved cited work

Reference 14

Resolution
unresolved
raw_fallback, observed 2026-05-21T04:13:57.259594Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-05-21T04:11:16.231567Z digest=sha256:07f5c8dec5c257891bd1651fb19bf9f4352ee21087c1c59e060d361ee6adc77c

Observation 5c8a0fa3-0c13-4a01-a2ca-dff3843d304b · outbound

This paper cites doi: 10.18653/v1/2021.emnlp-main.685.

BioDefect: The First Dataset for Defect Detection in Bioinformatics Software doi: 10.18653/v1/2021.emnlp-main.685

Reference 15

Resolution
verified exact
doi, observed 2026-05-21T04:13:56.418834Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-05-21T04:11:16.231567Z digest=sha256:b08034791b57677ea315fd0f3ae103f6f1a5f76d2453d3faa15972511be3677e

Observation 028b9c06-6cf7-43aa-b8eb-a4e0b7757475 · outbound

This paper cites OPT: Open Pre-trained Transformer Language Models.

BioDefect: The First Dataset for Defect Detection in Bioinformatics Software OPT: Open Pre-trained Transformer Language Models

Reference 16

Resolution
metadata mismatch
local_arxiv, observed 2026-05-21T04:13:56.707337Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-05-21T04:11:16.231567Z digest=sha256:ea180855f44d3f40ebf7085b4002c3b5e2db853ec4f2509ad18c97113548e44f

Observation df83a6f5-7484-4bb8-8d36-c6143e00510a · outbound

This paper cites Miyato, S.

BioDefect: The First Dataset for Defect Detection in Bioinformatics Software Miyato, S

Reference 17

Resolution
metadata mismatch
arxiv_id, observed 2026-05-21T04:13:56.478928Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-05-21T04:11:16.231567Z digest=sha256:01b869e43754b2c471001c0509f01a5332a6bbeee9930d788d6375aa35d12c51

Observation 8f137e02-5d94-49e5-88ec-152b8d0dc491 · outbound

This paper cites InProceedings of the 26th International Symposium on Research in Attacks, Intrusions and Defenses.

BioDefect: The First Dataset for Defect Detection in Bioinformatics Software InProceedings of the 26th International Symposium on Research in Attacks, Intrusions and Defenses

Reference 18

Resolution
verified exact
arxiv_id, observed 2026-05-21T04:13:56.476201Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-05-21T04:11:16.231567Z digest=sha256:79f929fd37a6c3ebf624b3ce3700334c717eea15a86cc1ba4594f3957bce87c0

Observation ee0435c4-25b4-4cd2-a9c3-42c0a2594270 · outbound

This paper cites Vulnerability Detection with Code Language Models: How Far Are We?.

BioDefect: The First Dataset for Defect Detection in Bioinformatics Software Vulnerability Detection with Code Language Models: How Far Are We?

Reference 19

Resolution
verified exact
arxiv_id, observed 2026-05-21T04:13:56.721006Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-05-21T04:11:16.231567Z digest=sha256:616512d2df8108d7d54b1dc9e18aabb8c22633d2334cae8a9dd8b25d60b77f7b

Observation 5248a376-ae35-47d5-b2cb-e5dbc420cd53 · outbound

This paper cites In 45th IEEE/ACM International Conference on Software Engineering, ICSE 2023, Melbourne, Australia, May 14-20.

BioDefect: The First Dataset for Defect Detection in Bioinformatics Software In 45th IEEE/ACM International Conference on Software Engineering, ICSE 2023, Melbourne, Australia, May 14-20

Reference 20

Resolution
metadata mismatch
arxiv_id, observed 2026-05-21T04:13:56.458215Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-05-21T04:11:16.231567Z digest=sha256:c743aa9de06c6f0d4a066c11fc6d10765e4ce9872957717af8f1625451c618d5

Observation a31eb43a-a47f-469d-98a4-b25d10ab39c4 · outbound

This paper cites Ernst, Reid Holmes, and Gordon Fraser.

BioDefect: The First Dataset for Defect Detection in Bioinformatics Software Ernst, Reid Holmes, and Gordon Fraser

Reference 21

Resolution
metadata mismatch
arxiv_id, observed 2026-05-21T04:13:56.441290Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

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Observation 19aba142-0683-4f9f-8f50-cff9bbce4e4e · outbound

This paper cites an unresolved cited work.

BioDefect: The First Dataset for Defect Detection in Bioinformatics Software Unresolved cited work

Reference 22

Resolution
verified exact
doi, observed 2026-05-21T04:13:56.481538Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-05-21T04:11:16.231567Z digest=sha256:599d0b529d4e8e0589bc068594efbb8cc882a71bc074deeb956af3f449721a2a

Observation d974bb63-4961-4ca2-ab85-8edef908f28b · outbound

This paper cites A systematic literature review on automated software vulnerability detection using machine learning,.

BioDefect: The First Dataset for Defect Detection in Bioinformatics Software A systematic literature review on automated software vulnerability detection using machine learning,

Reference 23

Resolution
verified exact
doi, observed 2026-05-21T04:13:56.409185Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-05-21T04:11:16.231567Z digest=sha256:32436b7252ab07e8a1db294775f220803457a2ede2e440239aa734452f669209

Observation 961022e4-911e-4d8c-9a57-f92cb293301e · outbound

This paper cites an unresolved cited work.

BioDefect: The First Dataset for Defect Detection in Bioinformatics Software Unresolved cited work

Reference 24

Resolution
verified exact
doi, observed 2026-05-21T04:13:56.445516Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-05-21T04:11:16.231567Z digest=sha256:e24d0a618d7512ab13ec4e2a8c1f14c5b06aa791b2f077762bca21f88f56a025

Observation 4511afa7-0a23-43e5-bad0-a0e3070fada9 · outbound

This paper cites an unresolved cited work.

BioDefect: The First Dataset for Defect Detection in Bioinformatics Software Unresolved cited work

Reference 25

Resolution
unresolved
raw_fallback, observed 2026-05-21T04:13:57.255694Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-05-21T04:11:16.231567Z digest=sha256:5ba0ed3e5762c94c62874101441339df08754c031d6eca7a2749be74800f0134

Observation 52f02b15-6307-4964-b58a-77dbe01d10b0 · outbound

This paper cites In: Proceedings of the 17th International Conference on Mining Software Repositories.

BioDefect: The First Dataset for Defect Detection in Bioinformatics Software In: Proceedings of the 17th International Conference on Mining Software Repositories

Reference 26

Resolution
metadata mismatch
arxiv_id, observed 2026-05-21T04:13:56.473640Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-05-21T04:11:16.231567Z digest=sha256:83bf1083292121eeb5efedd64f3ca00ad107e3471ec6ef0630ed997bebce1cbe

Observation 9425e81a-0c0f-449f-839c-2b2f703e8d5a · outbound

This paper cites Proceedings of the 2019 ACM SIGPLAN International Symposium on New Ideas, New Paradigms, and Reflections on Programming and Software , pages =.

BioDefect: The First Dataset for Defect Detection in Bioinformatics Software Proceedings of the 2019 ACM SIGPLAN International Symposium on New Ideas, New Paradigms, and Reflections on Programming and Software , pages =

Reference 27

Resolution
metadata mismatch
arxiv_id, observed 2026-05-21T04:13:56.460479Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

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Observation e47924df-52ed-4ccf-8ad7-036f3972554b · outbound

This paper cites In 45th IEEE/ACM International Conference on Software Engineering, ICSE 2023, Melbourne, Australia, May 14-20.

BioDefect: The First Dataset for Defect Detection in Bioinformatics Software In 45th IEEE/ACM International Conference on Software Engineering, ICSE 2023, Melbourne, Australia, May 14-20

Reference 28

Resolution
metadata mismatch
arxiv_id, observed 2026-05-21T04:13:56.457829Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-05-21T04:11:16.231567Z digest=sha256:570ed870079e92775c65f7df19740ef33cb0d0089803bc42b08100abb56cc5c6

Observation ad3976cd-8252-41d6-9e6d-0c0be34694bc · outbound

This paper cites In: 2024 IEEE 35th International Symposium on Software Reliability Engineering (ISSRE), pp.

BioDefect: The First Dataset for Defect Detection in Bioinformatics Software In: 2024 IEEE 35th International Symposium on Software Reliability Engineering (ISSRE), pp

Reference 29

Resolution
metadata mismatch
arxiv_id, observed 2026-05-21T04:13:56.483889Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-05-21T04:11:16.231567Z digest=sha256:0acf220c2d175aea1c69e0cd1c72923ec7d733c16794756daff9c78a3bebff48

Observation bcc219c7-eaa8-4177-9d28-547fe502337f · outbound

This paper cites Alexander Wolf, Philipp Angerer, and Fabian J.

BioDefect: The First Dataset for Defect Detection in Bioinformatics Software Alexander Wolf, Philipp Angerer, and Fabian J

Reference 30

Resolution
verified fuzzy
raw_fallback, observed 2026-05-21T04:13:57.257565Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-05-21T04:11:16.231567Z digest=sha256:2b3c291f412efde507b30fe406a50cfc4f13af0a7a3a4d3abc8e34a9d2828c7c

Observation 912c78f3-e4cb-43fc-9067-b9d2e65c8a85 · outbound

This paper cites Alexander Wolf, Philipp Angerer, and Fabian J.

BioDefect: The First Dataset for Defect Detection in Bioinformatics Software Alexander Wolf, Philipp Angerer, and Fabian J

Reference 31

Resolution
verified exact
doi, observed 2026-05-21T04:13:56.474550Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-05-21T04:11:16.231567Z digest=sha256:b7dc395c8582f1acc1324ba588799bcfc86ef03894383af7189aa5eda104f72e

Observation 6a1557f2-60cd-42cd-9d89-2304d366499b · outbound

This paper cites Li, and R.

BioDefect: The First Dataset for Defect Detection in Bioinformatics Software Li, and R

Reference 32

Resolution
verified exact
doi, observed 2026-05-21T04:13:56.439696Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-05-21T04:11:16.231567Z digest=sha256:4eeef35f94d9c42964d2f4779e637c38609cefbb46f8133873e40e49acf7cc9c

Observation 7d965eb5-4ad4-4a63-9c89-39c4123202c9 · outbound

This paper cites Salzberg.

BioDefect: The First Dataset for Defect Detection in Bioinformatics Software Salzberg

Reference 33

Resolution
verified exact
doi, observed 2026-05-21T04:13:56.447279Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-05-21T04:11:16.231567Z digest=sha256:2f935e848152b45efb8c5515ac86cb90778f131d7ef50b543d868fe13d4ee335

Observation d173fa7c-f359-4943-9542-5a525f1f61ba · outbound

This paper cites CodeXGLUE: A Machine Learning Benchmark Dataset for Code Understanding and Generation.

BioDefect: The First Dataset for Defect Detection in Bioinformatics Software CodeXGLUE: A Machine Learning Benchmark Dataset for Code Understanding and Generation

Reference 34

Resolution
verified exact
local_arxiv, observed 2026-05-21T04:13:56.714671Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-05-21T04:11:16.231567Z digest=sha256:582fe34cba7b14249d230d556a163d80e7edf4914ffb613821d378f8049335d6

Observation 39cfda46-dfb3-40d1-bcfa-8d92f30e0121 · outbound

This paper cites an unresolved cited work.

BioDefect: The First Dataset for Defect Detection in Bioinformatics Software Unresolved cited work

Reference 35

Resolution
unresolved
raw_fallback, observed 2026-05-21T04:13:57.261378Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-05-21T04:11:16.231567Z digest=sha256:b743de7dba01eba537f69dfa95d68b227a0ddf84eccdc5392deba61f5961b9e1

Observation 32c32b72-a8f1-415f-b115-e4659a528a1e · outbound

This paper cites In 45th IEEE/ACM International Conference on Software Engineering, ICSE 2023, Melbourne, Australia, May 14-20.

BioDefect: The First Dataset for Defect Detection in Bioinformatics Software In 45th IEEE/ACM International Conference on Software Engineering, ICSE 2023, Melbourne, Australia, May 14-20

Reference 36

Resolution
metadata mismatch
arxiv_id, observed 2026-05-21T04:13:56.460721Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-05-21T04:11:16.231567Z digest=sha256:60fd33d381f6d2c2c428a1fa90d9baef298c02c1e96cfd71d69b4da924b96a67

Observation 1d9e5e62-675f-4abb-b11c-5494ff97549d · outbound

This paper cites IEEE Transactions on Software Engineering50(8), 2163–2177 (2024).

BioDefect: The First Dataset for Defect Detection in Bioinformatics Software IEEE Transactions on Software Engineering50(8), 2163–2177 (2024)

Reference 37

Resolution
verified exact
arxiv_id, observed 2026-05-21T04:13:56.450786Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-05-21T04:11:16.231567Z digest=sha256:0fab6e0cfc8b52fe15c6fb9638a138309f3ef4cd9d29caab59b270c688cf5715

Observation 8712ec70-e9ec-4538-8843-1b4aa3d120ae · outbound

This paper cites GraphCodeBERT: Pre-training Code Representations with Data Flow.

BioDefect: The First Dataset for Defect Detection in Bioinformatics Software GraphCodeBERT: Pre-training Code Representations with Data Flow

Reference 38

Resolution
verified exact
local_arxiv, observed 2026-05-21T04:13:56.723772Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-05-21T04:11:16.231567Z digest=sha256:dad3cc5605d6e08e6cbca2fd4a54a8dbdfd9900e89a6ee9d59302f1237e868c7

Observation 492122d4-c4a0-49fa-a1b2-beb68fa43d3d · outbound

This paper cites BERT : Pre-training of Deep Bidirectional Transformers for Language Understanding.

BioDefect: The First Dataset for Defect Detection in Bioinformatics Software BERT : Pre-training of Deep Bidirectional Transformers for Language Understanding

Reference 39

Resolution
verified exact
doi, observed 2026-05-21T04:13:56.481232Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-05-21T04:11:16.231567Z digest=sha256:32532c32ed1e5f272baf2624832e28da71946a5f88e0ec1cd8a0db6892de7510

Observation adeb19e8-ed84-4797-8d0d-e4ce8817457c · outbound

This paper cites an unresolved cited work.

BioDefect: The First Dataset for Defect Detection in Bioinformatics Software Unresolved cited work

Reference 40

Resolution
unresolved
raw_fallback, observed 2026-05-21T04:13:57.279824Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-05-21T04:11:16.231567Z digest=sha256:97ff1b7ed8cbf403a56dd4b9514c3f1767311468d135341c1953b393a5d267f0

Observation 6ae50b12-edf8-440f-850a-baf85b1a2ccd · outbound

This paper cites CodeBERT: A pre-trained model for programming and natural languages.

BioDefect: The First Dataset for Defect Detection in Bioinformatics Software CodeBERT: A pre-trained model for programming and natural languages

Reference 41

Resolution
verified exact
doi, observed 2026-05-21T04:13:56.464621Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-05-21T04:11:16.231567Z digest=sha256:895fba15aa79674463334cf31030c5e16328d2f1dc9971f15c8e0948433aed27

Observation 78effef2-633e-4ba8-b837-eaaa9e200bd6 · outbound

This paper cites an unresolved cited work.

BioDefect: The First Dataset for Defect Detection in Bioinformatics Software Unresolved cited work

Reference 42

Resolution
unresolved
raw_fallback, observed 2026-05-21T04:13:57.274023Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-05-21T04:11:16.231567Z digest=sha256:42a7c657579325a359087df0e6a94abd50ef4b747b3d45a729c51a3574dc6f45

Observation a4ea03e1-018a-4ead-aeb8-17618b2f5140 · outbound

This paper cites an unresolved cited work.

BioDefect: The First Dataset for Defect Detection in Bioinformatics Software Unresolved cited work

Reference 43

Resolution
unresolved
raw_fallback, observed 2026-05-21T04:13:57.276005Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-05-21T04:11:16.231567Z digest=sha256:fdb0b43647c84dc462a3c8c01223fc86c83b8319a2ae5260d933a852ac211f7e

Observation a6c4db30-82f0-4412-ae03-cb6a15fa8e07 · outbound

This paper cites Transformers: State-of-the-Art Natural Language Processing.

BioDefect: The First Dataset for Defect Detection in Bioinformatics Software Transformers: State-of-the-Art Natural Language Processing

Reference 44

Resolution
verified exact
doi, observed 2026-05-21T04:13:56.472529Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-05-21T04:11:16.231567Z digest=sha256:90dd92e46c37450e13523a47065887a7c68190b78f789f7ef56273a5c73b21d5

Observation 36cf8ef7-9da7-44df-8442-84a3b2f2d99f · outbound

This paper cites Warrens, and Giuseppe Jurman.

BioDefect: The First Dataset for Defect Detection in Bioinformatics Software Warrens, and Giuseppe Jurman

Reference 45

Resolution
verified exact
arxiv_id, observed 2026-05-21T04:13:56.445382Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-05-21T04:11:16.231567Z digest=sha256:c21a54d2ef5464f25e0b50674c1360c87b2694dbcf6ae13534b3d5b0f95af928

Observation 05f7fdec-4116-4821-96c6-a5f53ef64434 · outbound

This paper cites an unresolved cited work.

BioDefect: The First Dataset for Defect Detection in Bioinformatics Software Unresolved cited work

Reference 46

Resolution
verified exact
arxiv_id, observed 2026-05-21T04:13:56.488962Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-05-21T04:11:16.231567Z digest=sha256:3fd073b34b12fc3cd990bd15388ad975e734abfcab7e2b1b048591466ea682f7

Observation 29dface6-de6d-452c-924b-1d4f96130623 · outbound

This paper cites an unresolved cited work.

BioDefect: The First Dataset for Defect Detection in Bioinformatics Software Unresolved cited work

Reference 47

Resolution
unresolved
raw_fallback, observed 2026-05-21T04:13:57.278039Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-05-21T04:11:16.231567Z digest=sha256:8fced234a9f8b56442ffd36bc37850c9ff5ad79b34434e8ec43145b8418fbb6a

Observation e6a3529c-28ff-499f-91fc-c42e45b2a27c · outbound

This paper cites an unresolved cited work.

BioDefect: The First Dataset for Defect Detection in Bioinformatics Software Unresolved cited work

Reference 48

Resolution
verified exact
arxiv_id, observed 2026-05-21T04:13:56.414792Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-05-21T04:11:16.231567Z digest=sha256:39425054e149e4f56fd33d7875fae0364c5540c18d440f86b9be019b7df7b77a

Observation 9cba9f2d-785c-4233-a63c-711521267321 · outbound

This paper cites Corrado, and Jeffrey Dean.

BioDefect: The First Dataset for Defect Detection in Bioinformatics Software Corrado, and Jeffrey Dean

Reference 49

Resolution
verified fuzzy
raw_fallback, observed 2026-05-21T04:13:57.263158Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-05-21T04:11:16.231567Z digest=sha256:dcaab3423bb6387b7fb7143d8ddf31028393c2932ba64511691c4e8c9bd81a5f

Observation 0f98dadd-6c42-479a-bc60-ee794897c16d · outbound

This paper cites VulDeeLocator: A deep learning-based fine-grained vulnerability detector.

BioDefect: The First Dataset for Defect Detection in Bioinformatics Software VulDeeLocator: A deep learning-based fine-grained vulnerability detector

Reference 50

Resolution
verified exact
arxiv_id, observed 2026-05-21T04:13:56.477281Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-05-21T04:11:16.231567Z digest=sha256:a24d23b38eb9bf286238564ca61a3ddea194cc4955840a9d14143e01717a1e9b

Observation 5c7b307f-efe0-4d3d-8300-a88f89a8e953 · outbound

This paper cites SySeVR: A framework for using deep learning to detect software vulnerabilities.

BioDefect: The First Dataset for Defect Detection in Bioinformatics Software SySeVR: A framework for using deep learning to detect software vulnerabilities

Reference 51

Resolution
verified exact
arxiv_id, observed 2026-05-21T04:13:56.468031Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-05-21T04:11:16.231567Z digest=sha256:fd0fa20a4cec087df802795c2c26606fed3501321351e0194fbae8cb57a75cd5

Observation 584b9302-4313-4da2-84fc-7fc20a0dbced · outbound

This paper cites Available: https://doi.org/10.1145/3510003.3510229.

BioDefect: The First Dataset for Defect Detection in Bioinformatics Software Available: https://doi.org/10.1145/3510003.3510229

Reference 52

Resolution
metadata mismatch
arxiv_id, observed 2026-05-21T04:13:56.423554Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-05-21T04:11:16.231567Z digest=sha256:24b88f62a1cf3cca52d71b2e71fa84e766a3cdc4034e68248fb0c01ef0fe5705

Observation 8faff58a-953f-4801-bed4-763968090b21 · outbound

This paper cites UniXcoder: Unified cross-modal pre-training for code representation.

BioDefect: The First Dataset for Defect Detection in Bioinformatics Software UniXcoder: Unified cross-modal pre-training for code representation

Reference 53

Resolution
verified exact
doi, observed 2026-05-21T04:13:56.437247Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-05-21T04:11:16.231567Z digest=sha256:c2d660674e148142a6a1d46370b97e500b13f6a06205da04903125a92ec7e01c

Observation fbe7c071-7073-454a-bfe9-f43cd3711f0f · outbound

This paper cites an unresolved cited work.

BioDefect: The First Dataset for Defect Detection in Bioinformatics Software Unresolved cited work

Reference 54

Resolution
unresolved
raw_fallback, observed 2026-05-21T04:13:57.264850Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-05-21T04:11:16.231567Z digest=sha256:e4d6c085f5501ab195a02e23dc5b46940f6d3362b409f9be6ac12e4c5eca9ac2

Observation 218edec8-4866-42e1-bd0a-b6629ebdf88a · outbound

This paper cites In2021 IEEE International Conference on Software Maintenance and Evolution (ICSME).

BioDefect: The First Dataset for Defect Detection in Bioinformatics Software In2021 IEEE International Conference on Software Maintenance and Evolution (ICSME)

Reference 55

Resolution
metadata mismatch
arxiv_id, observed 2026-05-21T04:13:56.486495Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-05-21T04:11:16.231567Z digest=sha256:0cf4731db8a99023b320c4913ee4e7a776f135fa5919dec5ed1087fdaf4651d8

Observation de201e26-d127-4c19-8146-0162c42c2862 · outbound

This paper cites IEEE Transactions on Technology and Society , author =.

BioDefect: The First Dataset for Defect Detection in Bioinformatics Software IEEE Transactions on Technology and Society , author =

Reference 56

Resolution
verified exact
arxiv_id, observed 2026-05-21T04:13:56.455445Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-05-21T04:11:16.231567Z digest=sha256:f0c991a5cbf6a005ac831c2ec8df74cd34a8054d8a7f2bdcc3271de89609a901

Pith citing papers

No inbound Pith citation observations are available.