Paper Citation Record · LEDGER

Regularizing and Normalizing DAGs and Phylogenetic Networks

As of 14 August 2026, this Paper Citation Record lists 30 of 30 outbound references and 1 inbound Pith citation observation for arXiv:2605.21725.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2605.21725 v1

Coverage vector

measured 30 of 30 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-05-22T07:35:58.356439Z

measured 31 of 31 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-14T06:32:32.682623+00:00

measured 1 of 1 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links, observed 2026-07-10T10:28:27.034904Z

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: pith, observed 2026-07-10T10:37:01.849981Z

Reference resolution

30 of 30 outbound references displayed

verified exact25
verified fuzzy2
unresolved0
parse uncertain0
malformed identifier3
metadata mismatch0

External citation measurements

No source-named external measurement is stored.

Outbound references

Observation de119ae5-3e69-47eb-949b-c895873ca9aa · outbound

This paper cites IEEE Transactions on Knowledge and Data Engineering 16(9):1128–1142, DOI 10.1109/TKDE.2004.

Regularizing and Normalizing DAGs and Phylogenetic Networks IEEE Transactions on Knowledge and Data Engineering 16(9):1128–1142, DOI 10.1109/TKDE.2004

Reference 2

Resolution: verified exact; doi, observed 2026-05-22T07:36:13.821773Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

Observation a270f853-4f46-4cce-9bc5-b4ae5bf3ecf4 · outbound

This paper cites SIAM Journal on Com- puting 10(3):405–421, DOI 10.1137/0210030.

Regularizing and Normalizing DAGs and Phylogenetic Networks SIAM Journal on Com- puting 10(3):405–421, DOI 10.1137/0210030

Reference 3

Resolution: verified exact; doi, observed 2026-05-22T07:36:13.766790Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

Observation 3301be80-1b83-417e-b741-cdaf563dd7e2 · outbound

This paper cites Annals of Combinatorics 10(1):19–30, DOI 10.1007/s00026-006-0271-0.

Regularizing and Normalizing DAGs and Phylogenetic Networks Annals of Combinatorics 10(1):19–30, DOI 10.1007/s00026-006-0271-0

Reference 4

Resolution: verified exact; doi, observed 2026-05-22T07:36:13.782444Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

Observation 70ebf5f8-a4cd-48ba-9246-bdc487240c6a · outbound

This paper cites Ann Comb 8:391–408, DOI 10.1007/s00026-004-0228-0.

Regularizing and Normalizing DAGs and Phylogenetic Networks Ann Comb 8:391–408, DOI 10.1007/s00026-004-0228-0

Reference 5

Resolution: verified exact; doi, observed 2026-05-22T07:36:13.770485Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

Observation 76d9e887-c599-439f-b4c1-2fec6168816c · outbound

This paper cites Systematic Biology 55(1):46–56, DOI 10.1080/10635150500431197.

Regularizing and Normalizing DAGs and Phylogenetic Networks Systematic Biology 55(1):46–56, DOI 10.1080/10635150500431197

Reference 6

Resolution: verified exact; doi, observed 2026-05-22T07:36:13.731509Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

Observation 770b6109-a305-4e5d-8e19-65785d2e29ff · outbound

This paper cites IEEE/ACM Trans Comp Biol Bioinf 6:552–569, DOI 10.1109/TCBB.2007.70270.

Regularizing and Normalizing DAGs and Phylogenetic Networks IEEE/ACM Trans Comp Biol Bioinf 6:552–569, DOI 10.1109/TCBB.2007.70270

Reference 7

Resolution: verified exact; arxiv_id, observed 2026-05-22T07:36:13.749664Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

Observation 685123bb-6a52-47a4-8919-c368e14cabc7 · outbound

This paper cites Theoret- ical Computer Science 796:129–146, DOI 10.1016/j.tcs.2019.09.003.

Regularizing and Normalizing DAGs and Phylogenetic Networks Theoret- ical Computer Science 796:129–146, DOI 10.1016/j.tcs.2019.09.003

Reference 8

Resolution: verified exact; doi, observed 2026-05-22T07:36:13.754850Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

Observation f73fdc7c-c4c9-4dbc-916b-580231a9196e · outbound

This paper cites Journal of Theoretical Biology 265(4):535–542, DOI 10.1016/j.jtbi.2010.

Regularizing and Normalizing DAGs and Phylogenetic Networks Journal of Theoretical Biology 265(4):535–542, DOI 10.1016/j.jtbi.2010

Reference 9

Resolution: verified exact; doi, observed 2026-05-22T07:36:13.714373Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

Observation 142febc4-6784-4b68-bc67-3b72dbafb029 · outbound

This paper cites Journal of Theoretical Biology 614:112236, DOI 10.1016/j.jtbi.2025.112236.

Regularizing and Normalizing DAGs and Phylogenetic Networks Journal of Theoretical Biology 614:112236, DOI 10.1016/j.jtbi.2025.112236

Reference 10

Resolution: verified exact; arxiv_id, observed 2026-05-22T07:36:13.817657Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

Observation 094f2098-faa8-4ed7-8fa7-86fa0b3121ba · outbound

This paper cites Molecular Phyloge- netics and Evolution 163:107215, DOI 10.1016/j.ympev.2021.107215.

Regularizing and Normalizing DAGs and Phylogenetic Networks Molecular Phyloge- netics and Evolution 163:107215, DOI 10.1016/j.ympev.2021.107215

Reference 11

Resolution: verified exact; arxiv_id, observed 2026-05-22T07:36:13.777336Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

Observation 5c625a15-70c6-4798-9c6a-e82d9c5bb83c · outbound

This paper cites Journal of Mathematical Biology 80(3):865–953, DOI 10.1007/s00285-019-01444-2.

Regularizing and Normalizing DAGs and Phylogenetic Networks Journal of Mathematical Biology 80(3):865–953, DOI 10.1007/s00285-019-01444-2

Reference 12

Resolution: verified exact; doi, observed 2026-05-22T07:36:13.737930Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

Observation 469ffc2c-4331-4a9b-8c82-5033bdb50705 · outbound

This paper cites The MIT Press, DOI 10.7551/mitpress/9432.001.0001.

Regularizing and Normalizing DAGs and Phylogenetic Networks The MIT Press, DOI 10.7551/mitpress/9432.001.0001

Reference 13

Resolution: verified exact; doi, observed 2026-05-22T07:36:13.824893Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

Observation fb0e1e6d-1c4a-4119-8489-e15e77521e41 · outbound

This paper cites Bulletin of Mathematical Biology 87(2):20, DOI 10.1007/s11538-024-01398-7.

Regularizing and Normalizing DAGs and Phylogenetic Networks Bulletin of Mathematical Biology 87(2):20, DOI 10.1007/s11538-024-01398-7

Reference 14

Resolution: verified exact; doi, observed 2026-05-22T07:36:13.828054Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

Observation 97991099-3ef9-4e31-b9ad-bd1d9cead961 · outbound

This paper cites Discrete Applied Mathematics 378:584–593, DOI 10.1016/j.dam.2025.08.037.

Regularizing and Normalizing DAGs and Phylogenetic Networks Discrete Applied Mathematics 378:584–593, DOI 10.1016/j.dam.2025.08.037

Reference 15

Resolution: verified exact; doi, observed 2026-05-22T07:36:13.801117Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

Observation beb2571b-211e-45ca-ab71-edc6472c8fce · outbound

This paper cites Theory in Biosciences 142(4):301–358, DOI 10.1007/s12064-023-00398-w.

Regularizing and Normalizing DAGs and Phylogenetic Networks Theory in Biosciences 142(4):301–358, DOI 10.1007/s12064-023-00398-w

Reference 16

Resolution: verified exact; doi, observed 2026-05-22T07:36:13.789163Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

Observation abb72c40-33be-4413-8882-bfad4365b23e · outbound

This paper cites Journal of Classification 36(2):200–231, DOI 10.1007/s00357-018-9279-5.

Regularizing and Normalizing DAGs and Phylogenetic Networks Journal of Classification 36(2):200–231, DOI 10.1007/s00357-018-9279-5

Reference 17

Resolution: verified exact; doi, observed 2026-05-22T07:36:13.785613Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

Observation 202f8bd1-38b2-49d1-b304-005c76732070 · outbound

This paper cites Genome Biol Evol 3:23–35, DOI 10.1093/gbe/evq077.

Regularizing and Normalizing DAGs and Phylogenetic Networks Genome Biol Evol 3:23–35, DOI 10.1093/gbe/evq077

Reference 18

Resolution: verified exact; doi, observed 2026-05-22T07:36:13.808579Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

Observation 4f84be72-712e-45a1-aacd-9aa24f5188f0 · outbound

This paper cites MIT Press.

Regularizing and Normalizing DAGs and Phylogenetic Networks MIT Press

Reference 19

Resolution: verified fuzzy; raw_fallback, observed 2026-05-22T07:36:14.213702Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

Observation 2713c22e-03d3-49ad-b4ce-2de209e87f11 · outbound

This paper cites Bull Math Biol 87(3):44, DOI 10.1007/ s11538-025-01419-z 23.

Regularizing and Normalizing DAGs and Phylogenetic Networks Bull Math Biol 87(3):44, DOI 10.1007/ s11538-025-01419-z 23

Reference 20

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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

Observation 4c7c9019-894d-4e61-86bc-9f61637cc5cc · outbound

This paper cites Journal of Mathematical Biology 81(4):961–980, DOI 10.1007/ s00285-020-01533-7.

Regularizing and Normalizing DAGs and Phylogenetic Networks Journal of Mathematical Biology 81(4):961–980, DOI 10.1007/ s00285-020-01533-7

Reference 21

Resolution: malformed identifier; raw_fallback, observed 2026-05-22T07:36:14.216141Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

Observation 197ae93f-656e-4162-88fa-6a3cac0b0666 · outbound

This paper cites IEEE/ACM Transactions on Com- putational Biology and Bioinformatics 1(1):13–23, DOI 10.1109/TCBB.2004.10.

Regularizing and Normalizing DAGs and Phylogenetic Networks IEEE/ACM Transactions on Com- putational Biology and Bioinformatics 1(1):13–23, DOI 10.1109/TCBB.2004.10

Reference 22

Resolution: verified exact; doi, observed 2026-05-22T07:36:13.728231Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

Observation 61e6e40f-5e38-4dcd-8d8f-2c7df9190017 · outbound

This paper cites Cambridge University Press, DOI 10.1142/S0218126698000043.

Regularizing and Normalizing DAGs and Phylogenetic Networks Cambridge University Press, DOI 10.1142/S0218126698000043

Reference 23

Resolution: verified exact; doi, observed 2026-05-22T07:36:13.759555Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

Observation ab0027e6-ee08-4dfe-bb8a-701128c73c67 · outbound

This paper cites Oxford University Press, Oxford, UK.

Regularizing and Normalizing DAGs and Phylogenetic Networks Oxford University Press, Oxford, UK

Reference 24

Resolution: verified fuzzy; raw_fallback, observed 2026-05-22T07:36:14.209098Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

Observation 3f65b14e-bb63-4b90-8f40-fb811c8a48ed · outbound

This paper cites In: Kalyanasundaram S, Maheshwari A (eds) Algorithms and Discrete Applied Mathematics, Springer Nature Switzerland, Cham, pp 148–161, DOI 10.1007/ 978-3-031-52213-0 11.

Regularizing and Normalizing DAGs and Phylogenetic Networks In: Kalyanasundaram S, Maheshwari A (eds) Algorithms and Discrete Applied Mathematics, Springer Nature Switzerland, Cham, pp 148–161, DOI 10.1007/ 978-3-031-52213-0 11

Reference 25

Resolution: malformed identifier; raw_fallback, observed 2026-05-22T07:36:14.211526Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

Observation d0dcc98a-5cd8-431c-b7c0-c637ee8a5eac · outbound

This paper cites Algorithms for Molecular Biology 15(1):5, DOI 10.1186/s13015-020-00165-2.

Regularizing and Normalizing DAGs and Phylogenetic Networks Algorithms for Molecular Biology 15(1):5, DOI 10.1186/s13015-020-00165-2

Reference 26

Resolution: verified exact; doi, observed 2026-05-22T07:36:13.741325Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

Observation 84244e87-67d1-47dc-98fe-32b38a51ccd1 · outbound

This paper cites IEEE/ACM Transac- tions on Computational Biology and Bioinformatics 9(4):1128–1138, DOI 10.1109/TCBB.2012.

Regularizing and Normalizing DAGs and Phylogenetic Networks IEEE/ACM Transac- tions on Computational Biology and Bioinformatics 9(4):1128–1138, DOI 10.1109/TCBB.2012

Reference 27

Resolution: verified exact; doi, observed 2026-05-22T07:36:13.734419Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

Observation 88f8297f-6c5b-4664-b8b9-99a5f09ea6b0 · outbound

This paper cites Bulletin of Mathematical Biology 72(2):340–358, DOI 10.1007/s11538-009-9449-z.

Regularizing and Normalizing DAGs and Phylogenetic Networks Bulletin of Mathematical Biology 72(2):340–358, DOI 10.1007/s11538-009-9449-z

Reference 28

Resolution: verified exact; doi, observed 2026-05-22T07:36:13.724869Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

Observation d568e804-6626-4423-8d13-6e71ed8c5a8d · outbound

This paper cites Bulletin of Mathe- matical Biology 73(10):2322–2338, DOI 10.1007/s11538-010-9624-2.

Regularizing and Normalizing DAGs and Phylogenetic Networks Bulletin of Mathe- matical Biology 73(10):2322–2338, DOI 10.1007/s11538-010-9624-2

Reference 29

Resolution: verified exact; doi, observed 2026-05-22T07:36:13.793273Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

Observation b032caef-4d18-4420-98e3-7d04aecdba2c · outbound

This paper cites Annals of Combinatorics 20(4):917–938, DOI 10.1007/s00026-016-0324-y.

Regularizing and Normalizing DAGs and Phylogenetic Networks Annals of Combinatorics 20(4):917–938, DOI 10.1007/s00026-016-0324-y

Reference 30

Resolution: verified exact; doi, observed 2026-05-22T07:36:13.804770Z

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No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

Observation be0e4517-38fc-4486-a947-a4ccc79c3dc9 · outbound

This paper cites Bulletin of Mathematical Biology 84(2):26, DOI 10.1007/s11538-021-00986-1 24.

Regularizing and Normalizing DAGs and Phylogenetic Networks Bulletin of Mathematical Biology 84(2):26, DOI 10.1007/s11538-021-00986-1 24

Reference 31

Resolution: verified exact; doi, observed 2026-05-22T07:36:13.763085Z

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No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

Pith citing papers

Observation 71659850-3fa0-4a0a-b320-ea0f7e5d751d · inbound

The $\ominus$-metric to compare phylogenetic networks cites this paper.

The $\ominus$-metric to compare phylogenetic networks Regularizing and Normalizing DAGs and Phylogenetic Networks

Reference 24

Resolution: metadata mismatch; local_arxiv, observed 2026-07-10T10:37:01.851291Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.