Paper Citation Record · LEDGER

Structure-Guided Adaptive Propagation for Protein-Protein Interaction Site Prediction

As of 23 August 2026, this Paper Citation Record lists 41 of 41 outbound references and 0 inbound Pith citation observations for arXiv:2606.01781.

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pith.paper-citation-record.v1
2606.01781 v1

Coverage vector

measured 41 of 41 reference resolution

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Source: paper_references, paper_reference_links, observed 2026-06-28T14:30:27.983017Z

measured 41 of 41 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-23T06:30:58.430688+00:00

measured 0 of 0 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links

measured 0 of 1 external citation measurements

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Source: cited_works

Reference resolution

41 of 41 outbound references displayed

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verified fuzzy0
unresolved39
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External citation measurements

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Outbound references

Observation 2cc974ae-71fd-4e54-b3c4-0bf4f0af1429 · outbound

This paper cites Protein–protein interactions define specificity in signal transduction,.

Structure-Guided Adaptive Propagation for Protein-Protein Interaction Site Prediction Protein–protein interactions define specificity in signal transduction,

Reference 1

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Observation d107caf8-b5b8-4ebf-8b12-c933dfda2ad7 · outbound

This paper cites A protein-interaction network of interferon-stimulated genes extends the innate immune system landscape,.

Structure-Guided Adaptive Propagation for Protein-Protein Interaction Site Prediction A protein-interaction network of interferon-stimulated genes extends the innate immune system landscape,

Reference 2

Resolution: unresolved; no resolver link, observed 2026-06-28T14:30:27.983017Z

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Observation 18ff0d08-1f44-4193-9f6d-d97786655bee · outbound

This paper cites Wirtz, O.

Structure-Guided Adaptive Propagation for Protein-Protein Interaction Site Prediction Wirtz, O

Reference 3

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Observation 53027ad3-08e4-45b4-8018-3d1fb15375e6 · outbound

This paper cites A mouse protein interactome through combined literature mining with multiple sources of interaction evidence,.

Structure-Guided Adaptive Propagation for Protein-Protein Interaction Site Prediction A mouse protein interactome through combined literature mining with multiple sources of interaction evidence,

Reference 4

Resolution: unresolved; no resolver link, observed 2026-06-28T14:30:27.983017Z

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Observation 53fa832b-81f8-48ea-8b14-9bde00b43f28 · outbound

This paper cites Review and comparative assessment of sequence-based predictors of protein-binding residues,.

Structure-Guided Adaptive Propagation for Protein-Protein Interaction Site Prediction Review and comparative assessment of sequence-based predictors of protein-binding residues,

Reference 5

Resolution: unresolved; no resolver link, observed 2026-06-28T14:30:27.983017Z

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Observation c236e408-1367-4cfb-aa93-d84d95c4892b · outbound

This paper cites Edg- ppis: an equivariant and dual-scale graph network for protein–protein interaction site prediction,.

Structure-Guided Adaptive Propagation for Protein-Protein Interaction Site Prediction Edg- ppis: an equivariant and dual-scale graph network for protein–protein interaction site prediction,

Reference 6

Resolution: unresolved; no resolver link, observed 2026-06-28T14:30:27.983017Z

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Observation 71738340-b0d1-46b8-9aa0-6429a5225da8 · outbound

This paper cites More challenges for machine-learning protein interactions,.

Structure-Guided Adaptive Propagation for Protein-Protein Interaction Site Prediction More challenges for machine-learning protein interactions,

Reference 7

Resolution: unresolved; no resolver link, observed 2026-06-28T14:30:27.983017Z

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Observation 95b5e2fc-2cd7-4320-af9c-f46f9a0b0e75 · outbound

This paper cites Deciphering protein–protein interactions. part i. experimental techniques and databases,.

Structure-Guided Adaptive Propagation for Protein-Protein Interaction Site Prediction Deciphering protein–protein interactions. part i. experimental techniques and databases,

Reference 8

Resolution: unresolved; no resolver link, observed 2026-06-28T14:30:27.983017Z

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Observation 0e34b8a2-95de-405e-920f-091de86001f4 · outbound

This paper cites Applying the na ¨ıve bayes classifier with kernel density estimation to the prediction of protein–protein interaction sites,.

Structure-Guided Adaptive Propagation for Protein-Protein Interaction Site Prediction Applying the na ¨ıve bayes classifier with kernel density estimation to the prediction of protein–protein interaction sites,

Reference 9

Resolution: unresolved; no resolver link, observed 2026-06-28T14:30:27.983017Z

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Observation c3893ee7-7c39-498c-8883-7615da65c069 · outbound

This paper cites Intpred: a structure-based predictor of protein–protein interaction sites,.

Structure-Guided Adaptive Propagation for Protein-Protein Interaction Site Prediction Intpred: a structure-based predictor of protein–protein interaction sites,

Reference 10

Resolution: unresolved; no resolver link, observed 2026-06-28T14:30:27.983017Z

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Observation 851971ec-d452-4d28-895e-8023ae5b0b95 · outbound

This paper cites Scriber: accurate and partner type-specific prediction of protein-binding residues from proteins sequences,.

Structure-Guided Adaptive Propagation for Protein-Protein Interaction Site Prediction Scriber: accurate and partner type-specific prediction of protein-binding residues from proteins sequences,

Reference 11

Resolution: unresolved; no resolver link, observed 2026-06-28T14:30:27.983017Z

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Observation b2e2df7b-1cd9-419b-9914-ee0ab5ee1ed8 · outbound

This paper cites Convsppis: identifying protein-protein interaction sites by an ensemble convolutional neural network with feature graph,.

Structure-Guided Adaptive Propagation for Protein-Protein Interaction Site Prediction Convsppis: identifying protein-protein interaction sites by an ensemble convolutional neural network with feature graph,

Reference 12

Resolution: unresolved; no resolver link, observed 2026-06-28T14:30:27.983017Z

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Observation 5e1341e0-689e-4e3e-ba90-4330584fb75c · outbound

This paper cites Delphi: accurate deep ensemble model for protein interaction sites prediction,.

Structure-Guided Adaptive Propagation for Protein-Protein Interaction Site Prediction Delphi: accurate deep ensemble model for protein interaction sites prediction,

Reference 13

Resolution: unresolved; no resolver link, observed 2026-06-28T14:30:27.983017Z

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Observation 2b58c9fe-8b6e-4e9d-8dca-e992c1b204b1 · outbound

This paper cites Structure-aware protein–protein interaction site prediction using deep graph convolu- tional network,.

Structure-Guided Adaptive Propagation for Protein-Protein Interaction Site Prediction Structure-aware protein–protein interaction site prediction using deep graph convolu- tional network,

Reference 14

Resolution: unresolved; no resolver link, observed 2026-06-28T14:30:27.983017Z

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Observation 6d2e31fe-30f7-48e7-8e48-bbf248b68541 · outbound

This paper cites Asce-ppis: a protein–protein interaction sites predictor based on equivariant graph neural network with fusion of structure-aware pooling and graph collapse,.

Structure-Guided Adaptive Propagation for Protein-Protein Interaction Site Prediction Asce-ppis: a protein–protein interaction sites predictor based on equivariant graph neural network with fusion of structure-aware pooling and graph collapse,

Reference 15

Resolution: unresolved; no resolver link, observed 2026-06-28T14:30:27.983017Z

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Observation d0244889-44d5-4b1d-b01e-0fefa91aa9a1 · outbound

This paper cites Mgma-ppis: Predicting the protein–protein interaction site with multiview graph embedding and multiscale attention fusion,.

Structure-Guided Adaptive Propagation for Protein-Protein Interaction Site Prediction Mgma-ppis: Predicting the protein–protein interaction site with multiview graph embedding and multiscale attention fusion,

Reference 16

Resolution: unresolved; no resolver link, observed 2026-06-28T14:30:27.983017Z

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Observation 03f75473-3ac7-4e3c-9619-0a0ab42a0ff0 · outbound

This paper cites Comgat-ppis: A community-augmented graph attention network for protein-protein interaction site prediction,.

Structure-Guided Adaptive Propagation for Protein-Protein Interaction Site Prediction Comgat-ppis: A community-augmented graph attention network for protein-protein interaction site prediction,

Reference 17

Resolution: unresolved; no resolver link, observed 2026-06-28T14:30:27.983017Z

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Observation 0785413d-9ddf-465a-b8c3-43b70efbc806 · outbound

This paper cites Conservation and relative importance of residues across protein-protein interfaces,.

Structure-Guided Adaptive Propagation for Protein-Protein Interaction Site Prediction Conservation and relative importance of residues across protein-protein interfaces,

Reference 18

Resolution: unresolved; no resolver link, observed 2026-06-28T14:30:27.983017Z

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Observation d7addf58-fbd5-4d86-92d1-664aa4e400cb · outbound

This paper cites A simple definition of structural regions in proteins and its use in analyzing interface evolution,.

Structure-Guided Adaptive Propagation for Protein-Protein Interaction Site Prediction A simple definition of structural regions in proteins and its use in analyzing interface evolution,

Reference 19

Resolution: unresolved; no resolver link, observed 2026-06-28T14:30:27.983017Z

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Observation ba4c2dad-a448-491d-89ec-e118ed08bf32 · outbound

This paper cites The contribution of missense mutations in core and rim residues of protein–protein interfaces to human disease,.

Structure-Guided Adaptive Propagation for Protein-Protein Interaction Site Prediction The contribution of missense mutations in core and rim residues of protein–protein interfaces to human disease,

Reference 20

Resolution: unresolved; no resolver link, observed 2026-06-28T14:30:27.983017Z

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Observation 32e061dc-39ae-4338-a309-1ec4977dd5c9 · outbound

This paper cites Local geometry and evolutionary con- servation of protein surfaces reveal the multiple recognition patches in protein-protein interactions,.

Structure-Guided Adaptive Propagation for Protein-Protein Interaction Site Prediction Local geometry and evolutionary con- servation of protein surfaces reveal the multiple recognition patches in protein-protein interactions,

Reference 21

Resolution: unresolved; no resolver link, observed 2026-06-28T14:30:27.983017Z

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Observation a0a25fdb-e2bc-4a1b-8e79-c72da6b3f5d5 · outbound

This paper cites Predict then propagate: Graph neural networks meet personalized pagerank,.

Structure-Guided Adaptive Propagation for Protein-Protein Interaction Site Prediction Predict then propagate: Graph neural networks meet personalized pagerank,

Reference 22

Resolution: unresolved; no resolver link, observed 2026-06-28T14:30:27.983017Z

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Observation d2b85334-fb9a-4096-87db-c8632a25985a · outbound

This paper cites Zeng, F.-F.

Structure-Guided Adaptive Propagation for Protein-Protein Interaction Site Prediction Zeng, F.-F

Reference 23

Resolution: unresolved; no resolver link, observed 2026-06-28T14:30:27.983017Z

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Observation 0e02d44c-c942-46be-892a-d3014d2cc9bd · outbound

This paper cites Agat-ppis: a novel protein–protein interaction site predictor based on augmented graph attention network with initial residual and identity mapping,.

Structure-Guided Adaptive Propagation for Protein-Protein Interaction Site Prediction Agat-ppis: a novel protein–protein interaction site predictor based on augmented graph attention network with initial residual and identity mapping,

Reference 24

Resolution: unresolved; no resolver link, observed 2026-06-28T14:30:27.983017Z

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Observation cc7d37b1-0640-48e7-96e1-512780d249fc · outbound

This paper cites Gapped blast and psi-blast: a new generation of protein database search programs,.

Structure-Guided Adaptive Propagation for Protein-Protein Interaction Site Prediction Gapped blast and psi-blast: a new generation of protein database search programs,

Reference 25

Resolution: unresolved; no resolver link, observed 2026-06-28T14:30:27.983017Z

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Observation eba2044e-84ab-4c88-9a15-6e1dbfa9fffb · outbound

This paper cites Hhblits: lightning- fast iterative protein sequence searching by hmm-hmm alignment,.

Structure-Guided Adaptive Propagation for Protein-Protein Interaction Site Prediction Hhblits: lightning- fast iterative protein sequence searching by hmm-hmm alignment,

Reference 26

Resolution: unresolved; no resolver link, observed 2026-06-28T14:30:27.983017Z

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Observation d0833ff1-3053-4d34-b973-e62152c63386 · outbound

This paper cites Dictionary of protein secondary struc- ture: pattern recognition of hydrogen-bonded and geometrical features,.

Structure-Guided Adaptive Propagation for Protein-Protein Interaction Site Prediction Dictionary of protein secondary struc- ture: pattern recognition of hydrogen-bonded and geometrical features,

Reference 27

Resolution: unresolved; no resolver link, observed 2026-06-28T14:30:27.983017Z

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Observation 952074c6-8344-4fde-87b3-46429a908dff · outbound

This paper cites E (n) equivariant graph neural networks,.

Structure-Guided Adaptive Propagation for Protein-Protein Interaction Site Prediction E (n) equivariant graph neural networks,

Reference 28

Resolution: unresolved; no resolver link, observed 2026-06-28T14:30:27.983017Z

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Observation 4ec53309-f482-47b9-bafd-0e2205adf053 · outbound

This paper cites Semi-supervised classification with graph convolutional networks,.

Structure-Guided Adaptive Propagation for Protein-Protein Interaction Site Prediction Semi-supervised classification with graph convolutional networks,

Reference 29

Resolution: unresolved; no resolver link, observed 2026-06-28T14:30:27.983017Z

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Observation 26534a92-c65d-41a5-82cd-34e0ed77d245 · outbound

This paper cites Deeper insights into graph convolutional networks for semi-supervised learning,.

Structure-Guided Adaptive Propagation for Protein-Protein Interaction Site Prediction Deeper insights into graph convolutional networks for semi-supervised learning,

Reference 30

Resolution: unresolved; no resolver link, observed 2026-06-28T14:30:27.983017Z

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Observation bd1c4620-7d15-4466-b15c-5b4c2df0812d · outbound

This paper cites The pagerank citation ranking: Bringing order to the web. technical report,.

Structure-Guided Adaptive Propagation for Protein-Protein Interaction Site Prediction The pagerank citation ranking: Bringing order to the web. technical report,

Reference 31

Resolution: unresolved; no resolver link, observed 2026-06-28T14:30:27.983017Z

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Observation 32d3d773-4c24-43d3-bc15-f0303f7ada90 · outbound

This paper cites MUSE: Parallel Multi-Scale Attention for Sequence to Sequence Learning.

Structure-Guided Adaptive Propagation for Protein-Protein Interaction Site Prediction MUSE: Parallel Multi-Scale Attention for Sequence to Sequence Learning

Reference 32

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Observation 05496097-d156-469b-b243-244966c37488 · outbound

This paper cites Pay Less Attention with Lightweight and Dynamic Convolutions.

Structure-Guided Adaptive Propagation for Protein-Protein Interaction Site Prediction Pay Less Attention with Lightweight and Dynamic Convolutions

Reference 33

Resolution: verified exact; local_arxiv, observed 2026-07-01T23:16:24.436884Z

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Observation befbc2aa-4339-417e-a4ab-08aad9242c17 · outbound

This paper cites Focal loss for dense object detection,.

Structure-Guided Adaptive Propagation for Protein-Protein Interaction Site Prediction Focal loss for dense object detection,

Reference 34

Resolution: unresolved; no resolver link, observed 2026-06-28T14:30:27.983017Z

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Observation 8210ca3e-4415-4b6a-9136-dcd51c7eea2f · outbound

This paper cites Agf-ppis: a protein–protein interaction site predictor based on an attention mechanism and graph convolutional networks,.

Structure-Guided Adaptive Propagation for Protein-Protein Interaction Site Prediction Agf-ppis: a protein–protein interaction site predictor based on an attention mechanism and graph convolutional networks,

Reference 35

Resolution: unresolved; no resolver link, observed 2026-06-28T14:30:27.983017Z

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Observation 65935948-a612-4812-a7ca-69dd5cab4bcd · outbound

This paper cites Prona2020 predicts protein–dna, protein–rna, and protein–protein binding proteins and residues from sequence,.

Structure-Guided Adaptive Propagation for Protein-Protein Interaction Site Prediction Prona2020 predicts protein–dna, protein–rna, and protein–protein binding proteins and residues from sequence,

Reference 36

Resolution: unresolved; no resolver link, observed 2026-06-28T14:30:27.983017Z

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Observation 2bdf6cf5-96d9-4cc3-9faa-69e583dfc244 · outbound

This paper cites Sequence-based prediction of protein-protein interaction sites by simplified long short- term memory network,.

Structure-Guided Adaptive Propagation for Protein-Protein Interaction Site Prediction Sequence-based prediction of protein-protein interaction sites by simplified long short- term memory network,

Reference 37

Resolution: unresolved; no resolver link, observed 2026-06-28T14:30:27.983017Z

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Observation a7ca16d8-dcbc-484c-85a0-889f7cd51d7f · outbound

This paper cites Protein– protein interaction site prediction through combining local and global features with deep neural networks,.

Structure-Guided Adaptive Propagation for Protein-Protein Interaction Site Prediction Protein– protein interaction site prediction through combining local and global features with deep neural networks,

Reference 38

Resolution: unresolved; no resolver link, observed 2026-06-28T14:30:27.983017Z

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Observation e8f5d4d8-9d6a-4be0-8934-18aca23407b0 · outbound

This paper cites Prediction-based fingerprints of protein– protein interactions,.

Structure-Guided Adaptive Propagation for Protein-Protein Interaction Site Prediction Prediction-based fingerprints of protein– protein interactions,

Reference 39

Resolution: unresolved; no resolver link, observed 2026-06-28T14:30:27.983017Z

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Observation 32a12a44-b4ca-4706-91a7-8e532eb8e976 · outbound

This paper cites Deciphering interaction fingerprints from protein molecular surfaces using geometric deep learning,.

Structure-Guided Adaptive Propagation for Protein-Protein Interaction Site Prediction Deciphering interaction fingerprints from protein molecular surfaces using geometric deep learning,

Reference 40

Resolution: unresolved; no resolver link, observed 2026-06-28T14:30:27.983017Z

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Observation 5a642fd0-7a2d-4ce5-b0aa-e4531ef08cb4 · outbound

This paper cites Deepprosite: structure-aware protein binding site prediction using esmfold and pretrained language model,.

Structure-Guided Adaptive Propagation for Protein-Protein Interaction Site Prediction Deepprosite: structure-aware protein binding site prediction using esmfold and pretrained language model,

Reference 41

Resolution: unresolved; no resolver link, observed 2026-06-28T14:30:27.983017Z

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