Paper Citation Record · LEDGER

HonestAffinity: Leak-Aware Evaluation of Protein and Pocket Priors for Binding Affinity Prediction

As of 4 August 2026, this Paper Citation Record lists 19 of 19 outbound references and 0 inbound Pith citation observations for arXiv:2606.03422.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2606.03422 v1

Coverage vector

measured 19 of 19 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-06-28T08:07:41.844037Z

measured 19 of 19 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-03T06:30:56.289259+00:00

measured 0 of 0 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: cited_works

Reference resolution

19 of 19 outbound references displayed

verified exact1
verified fuzzy0
unresolved18
parse uncertain0
malformed identifier0
metadata mismatch0

External citation measurements

No source-named external measurement is stored.

Outbound references

Observation f5f82a13-7e26-4807-8747-e295c6d5599b · outbound

This paper cites DeepDTA: Deep drug–target binding affinity prediction,.

HonestAffinity: Leak-Aware Evaluation of Protein and Pocket Priors for Binding Affinity Prediction DeepDTA: Deep drug–target binding affinity prediction,

Reference 1

Resolution: unresolved; no resolver link, observed 2026-06-28T08:07:41.844037Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation fdab756b-456d-465c-891e-96f2d6dda45a · outbound

This paper cites DeepDTAF: a deep learning method to predict protein–ligand binding affinity,.

HonestAffinity: Leak-Aware Evaluation of Protein and Pocket Priors for Binding Affinity Prediction DeepDTAF: a deep learning method to predict protein–ligand binding affinity,

Reference 2

Resolution: unresolved; no resolver link, observed 2026-06-28T08:07:41.844037Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 4119928c-2ee4-4db6-aa36-4f166a0e94a4 · outbound

This paper cites DeepBindAffinity: A ResNet-augmented hybrid CNN–Transformer for protein–ligand binding affinity prediction,.

HonestAffinity: Leak-Aware Evaluation of Protein and Pocket Priors for Binding Affinity Prediction DeepBindAffinity: A ResNet-augmented hybrid CNN–Transformer for protein–ligand binding affinity prediction,

Reference 3

Resolution: unresolved; no resolver link, observed 2026-06-28T08:07:41.844037Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 2eeeb9ce-6851-412f-a977-b8b219fb9411 · outbound

This paper cites Evolutionary-scale prediction of atomic-level protein structure,.

HonestAffinity: Leak-Aware Evaluation of Protein and Pocket Priors for Binding Affinity Prediction Evolutionary-scale prediction of atomic-level protein structure,

Reference 4

Resolution: unresolved; no resolver link, observed 2026-06-28T08:07:41.844037Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 53a93d1d-1c3c-4b77-beaa-7b6d21dd1f28 · outbound

This paper cites Biological structure and function emerge from scaling unsupervised learning to 250 million protein sequences,.

HonestAffinity: Leak-Aware Evaluation of Protein and Pocket Priors for Binding Affinity Prediction Biological structure and function emerge from scaling unsupervised learning to 250 million protein sequences,

Reference 5

Resolution: unresolved; no resolver link, observed 2026-06-28T08:07:41.844037Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 681564aa-1f88-4ff4-a3e3-4fcdc8d4ec5b · outbound

This paper cites Leak-proof PDBBind: A reorganized dataset of protein–ligand complexes for more generalizable binding affinity prediction,.

HonestAffinity: Leak-Aware Evaluation of Protein and Pocket Priors for Binding Affinity Prediction Leak-proof PDBBind: A reorganized dataset of protein–ligand complexes for more generalizable binding affinity prediction,

Reference 6

Resolution: verified exact; arxiv_id, observed 2026-07-02T05:36:40.328213Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-03T06:30:56.289259+00:00.

Observation c0f0fa57-0725-4d60-9a6e-4838ded20731 · outbound

This paper cites Development and evaluation of a deep learning model for protein– ligand binding affinity prediction,.

HonestAffinity: Leak-Aware Evaluation of Protein and Pocket Priors for Binding Affinity Prediction Development and evaluation of a deep learning model for protein– ligand binding affinity prediction,

Reference 7

Resolution: unresolved; no resolver link, observed 2026-06-28T08:07:41.844037Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation b7007569-86f5-4f99-9f0e-5113e54d2549 · outbound

This paper cites DEAttentionDTA: protein–ligand binding affinity prediction based on dynamic embedding and self-attention,.

HonestAffinity: Leak-Aware Evaluation of Protein and Pocket Priors for Binding Affinity Prediction DEAttentionDTA: protein–ligand binding affinity prediction based on dynamic embedding and self-attention,

Reference 8

Resolution: unresolved; no resolver link, observed 2026-06-28T08:07:41.844037Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 4da3757e-61b3-4a94-8c53-786dc0be00ea · outbound

This paper cites CAPLA: improved prediction of protein–ligand binding affinity by a deep learning approach based on a cross-attention mechanism,.

HonestAffinity: Leak-Aware Evaluation of Protein and Pocket Priors for Binding Affinity Prediction CAPLA: improved prediction of protein–ligand binding affinity by a deep learning approach based on a cross-attention mechanism,

Reference 9

Resolution: unresolved; no resolver link, observed 2026-06-28T08:07:41.844037Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 80300040-f3c2-413f-902d-2990b9e1870d · outbound

This paper cites Uni-Mol: A universal 3d molecular representation learning framework,.

HonestAffinity: Leak-Aware Evaluation of Protein and Pocket Priors for Binding Affinity Prediction Uni-Mol: A universal 3d molecular representation learning framework,

Reference 10

Resolution: unresolved; no resolver link, observed 2026-06-28T08:07:41.844037Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 9b11b320-2456-4bad-9cc4-ec6cbb283b1e · outbound

This paper cites Large-scale chemical language representations capture molecular structure and properties,.

HonestAffinity: Leak-Aware Evaluation of Protein and Pocket Priors for Binding Affinity Prediction Large-scale chemical language representations capture molecular structure and properties,

Reference 11

Resolution: unresolved; no resolver link, observed 2026-06-28T08:07:41.844037Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 20c0a83c-380b-4e0d-9a30-e6a82f690dfe · outbound

This paper cites The PDBbind database: methodologies and updates,.

HonestAffinity: Leak-Aware Evaluation of Protein and Pocket Priors for Binding Affinity Prediction The PDBbind database: methodologies and updates,

Reference 12

Resolution: unresolved; no resolver link, observed 2026-06-28T08:07:41.844037Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 7922239b-d4dd-48c4-bef1-589276901ac5 · outbound

This paper cites Comparative assessment of scoring functions: the CASF-2016 update,.

HonestAffinity: Leak-Aware Evaluation of Protein and Pocket Priors for Binding Affinity Prediction Comparative assessment of scoring functions: the CASF-2016 update,

Reference 13

Resolution: unresolved; no resolver link, observed 2026-06-28T08:07:41.844037Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation e22c9363-7940-442d-813c-a2b2d12dbd5e · outbound

This paper cites Attention is all you need,.

HonestAffinity: Leak-Aware Evaluation of Protein and Pocket Priors for Binding Affinity Prediction Attention is all you need,

Reference 14

Resolution: unresolved; no resolver link, observed 2026-06-28T08:07:41.844037Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 1c10ac09-2327-4522-8aea-9bca58359016 · outbound

This paper cites Decoupled weight decay regularization,.

HonestAffinity: Leak-Aware Evaluation of Protein and Pocket Priors for Binding Affinity Prediction Decoupled weight decay regularization,

Reference 15

Resolution: unresolved; no resolver link, observed 2026-06-28T08:07:41.844037Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 037a2bf2-9ad8-4978-8612-b1863f9b220f · outbound

This paper cites SGDR: Stochastic gradient descent with warm restarts,.

HonestAffinity: Leak-Aware Evaluation of Protein and Pocket Priors for Binding Affinity Prediction SGDR: Stochastic gradient descent with warm restarts,

Reference 16

Resolution: unresolved; no resolver link, observed 2026-06-28T08:07:41.844037Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation ff4442f8-cd88-418f-952b-2b9011ce43c1 · outbound

This paper cites Biopython: freely available Python tools for computational molecular biology and bioinformatics,.

HonestAffinity: Leak-Aware Evaluation of Protein and Pocket Priors for Binding Affinity Prediction Biopython: freely available Python tools for computational molecular biology and bioinformatics,

Reference 17

Resolution: unresolved; no resolver link, observed 2026-06-28T08:07:41.844037Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 8b806fc8-1b12-4f59-8c7a-79629b771f7a · outbound

This paper cites Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features,.

HonestAffinity: Leak-Aware Evaluation of Protein and Pocket Priors for Binding Affinity Prediction Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features,

Reference 18

Resolution: unresolved; no resolver link, observed 2026-06-28T08:07:41.844037Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 0174723f-708f-49d0-b3bf-545bb046ac14 · outbound

This paper cites RDKit: Open-source cheminformatics,.

HonestAffinity: Leak-Aware Evaluation of Protein and Pocket Priors for Binding Affinity Prediction RDKit: Open-source cheminformatics,

Reference 19

Resolution: unresolved; no resolver link, observed 2026-06-28T08:07:41.844037Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Pith citing papers

No inbound Pith citation observations are available.