On the Promises and Limits of Multi-omics Integration for Deconvolution: The HADACA3 Benchmark | Paper Citation Record

Observation e7528b38-e80a-4993-b456-4af3743fc576 · outbound

This paper cites A robust workflow to benchmark deconvolution of multi-omic data, November 2024.

On the Promises and Limits of Multi-omics Integration for Deconvolution: The HADACA3 Benchmark A robust workflow to benchmark deconvolution of multi-omic data, November 2024

Reference 1

Resolution: unresolved; no resolver link, observed 2026-06-27T22:56:05.960715Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation ea03bda4-eaea-4fc4-b862-8c370ab410da · outbound

This paper cites Powell, Pieter Mestdagh, and Katleen De Preter.

On the Promises and Limits of Multi-omics Integration for Deconvolution: The HADACA3 Benchmark Powell, Pieter Mestdagh, and Katleen De Preter

Reference 2

Resolution: unresolved; no resolver link, observed 2026-06-27T22:56:05.960715Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 3bdadbb1-bcf9-469e-8bcb-2d1f88e6a234 · outbound

This paper cites A technical review of multi-omics data integration methods: from classical statistical to deep generative approaches.

On the Promises and Limits of Multi-omics Integration for Deconvolution: The HADACA3 Benchmark A technical review of multi-omics data integration methods: from classical statistical to deep generative approaches

Reference 3

Resolution: unresolved; no resolver link, observed 2026-06-27T22:56:05.960715Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 23b59879-2e66-4110-9450-ef81c094b492 · outbound

This paper cites Wolock, Aubrey L.

On the Promises and Limits of Multi-omics Integration for Deconvolution: The HADACA3 Benchmark Wolock, Aubrey L

Reference 4

Resolution: unresolved; no resolver link, observed 2026-06-27T22:56:05.960715Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 5699ed71-bd2d-493b-b765-cc4d999fcc7b · outbound

This paper cites Bastounis, Yi-Ting Yeh, and Julie A.

On the Promises and Limits of Multi-omics Integration for Deconvolution: The HADACA3 Benchmark Bastounis, Yi-Ting Yeh, and Julie A

Reference 5

Resolution: unresolved; no resolver link, observed 2026-06-27T22:56:05.960715Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation afe40ac2-d5da-4941-98ae-f2fbfefdb2b6 · outbound

This paper cites Giraldo, Laetitia Lacroix, Bénédicte Buttard, Nabila Elarouci, Florent Petitprez, Janick Selves, Pierre Laurent-Puig, Catherine Sautès-Fridman, Wolf H.

On the Promises and Limits of Multi-omics Integration for Deconvolution: The HADACA3 Benchmark Giraldo, Laetitia Lacroix, Bénédicte Buttard, Nabila Elarouci, Florent Petitprez, Janick Selves, Pierre Laurent-Puig, Catherine Sautès-Fridman, Wolf H

Reference 6

Resolution: unresolved; no resolver link, observed 2026-06-27T22:56:05.960715Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation bb55f3a2-392a-4360-b898-47f6758feb23 · outbound

This paper cites Poulos, Jia Liu, and Qing Zhong.

On the Promises and Limits of Multi-omics Integration for Deconvolution: The HADACA3 Benchmark Poulos, Jia Liu, and Qing Zhong

Reference 7

Resolution: unresolved; no resolver link, observed 2026-06-27T22:56:05.960715Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 29f616be-9742-40ac-9fd7-c0a60b4b82df · outbound

This paper cites A unified computational framework for single-cell data integration with optimal transport.

On the Promises and Limits of Multi-omics Integration for Deconvolution: The HADACA3 Benchmark A unified computational framework for single-cell data integration with optimal transport

Reference 8

Resolution: unresolved; no resolver link, observed 2026-06-27T22:56:05.960715Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 9e82f729-875e-43de-905e-4ce9c03030ab · outbound

This paper cites an unresolved cited work.

On the Promises and Limits of Multi-omics Integration for Deconvolution: The HADACA3 Benchmark Unresolved cited work

Reference 9

Resolution: unresolved; no resolver link, observed 2026-06-27T22:56:05.960715Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 5ed0f292-14c4-498d-8840-391de451055e · outbound

This paper cites Benchmarking of methods for DNA methylome deconvolution.

On the Promises and Limits of Multi-omics Integration for Deconvolution: The HADACA3 Benchmark Benchmarking of methods for DNA methylome deconvolution

Reference 10

Resolution: unresolved; no resolver link, observed 2026-06-27T22:56:05.960715Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation f058d839-41e3-45b3-a25e-e76fef49f3ac · outbound

This paper cites DECON- bench: a benchmarking platform dedicated to deconvolution methods for tumor heterogeneity quantification.

On the Promises and Limits of Multi-omics Integration for Deconvolution: The HADACA3 Benchmark DECON- bench: a benchmarking platform dedicated to deconvolution methods for tumor heterogeneity quantification

Reference 11

Resolution: unresolved; no resolver link, observed 2026-06-27T22:56:05.960715Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 29759c0f-7466-4e30-bf05-dd750eef28aa · outbound

This paper cites Computational deconvolution of DNA methylation data from mixed DNA samples.

On the Promises and Limits of Multi-omics Integration for Deconvolution: The HADACA3 Benchmark Computational deconvolution of DNA methylation data from mixed DNA samples

Reference 12

Resolution: unresolved; no resolver link, observed 2026-06-27T22:56:05.960715Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation e96dde32-143e-4ca7-a8d8-7876716cf167 · outbound

This paper cites Senescence-associated DNA methylation is stochastically acquired in subpopulations of mesenchymal stem cells.

On the Promises and Limits of Multi-omics Integration for Deconvolution: The HADACA3 Benchmark Senescence-associated DNA methylation is stochastically acquired in subpopulations of mesenchymal stem cells

Reference 13

Resolution: verified exact; doi, observed 2026-06-27T23:01:21.983696Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-04T06:34:03.388597+00:00.

Observation ec5a9e24-46d7-41ff-8d10-6fd9874c94fe · outbound

This paper cites A Factor Model Ap- proach to Multiple Testing Under Dependence.

On the Promises and Limits of Multi-omics Integration for Deconvolution: The HADACA3 Benchmark A Factor Model Ap- proach to Multiple Testing Under Dependence

Reference 14

Resolution: verified exact; doi, observed 2026-06-27T23:01:21.987252Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-04T06:34:03.388597+00:00.

Observation 4614bcd4-73b6-42e8-86bb-f0d4e2bd1826 · outbound

This paper cites an unresolved cited work.

On the Promises and Limits of Multi-omics Integration for Deconvolution: The HADACA3 Benchmark Unresolved cited work

Reference 15

Resolution: unresolved; no resolver link, observed 2026-06-27T22:56:05.960715Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 7b821a3e-f719-4ef0-b690-2669e98f172d · outbound

This paper cites Hadaca3 benchmark: Multi-omic deconvolution challenge.

On the Promises and Limits of Multi-omics Integration for Deconvolution: The HADACA3 Benchmark Hadaca3 benchmark: Multi-omic deconvolution challenge

Reference 16

Resolution: unresolved; no resolver link, observed 2026-06-27T22:56:05.960715Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 6e6e5816-044d-4ad2-a5a5-9071c38b8a7a · outbound

This paper cites Hadaca3 framework: Modular nextflow pipeline for multi-omic deconvolution benchmarking, 2026.

On the Promises and Limits of Multi-omics Integration for Deconvolution: The HADACA3 Benchmark Hadaca3 framework: Modular nextflow pipeline for multi-omic deconvolution benchmarking, 2026

Reference 17

Resolution: unresolved; no resolver link, observed 2026-06-27T22:56:05.960715Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 0b6a1acd-56bf-411b-93cb-190e0f46ad4a · outbound

This paper cites Hadaca3 in silico multi-omic benchmark datasets, 2026.

On the Promises and Limits of Multi-omics Integration for Deconvolution: The HADACA3 Benchmark Hadaca3 in silico multi-omic benchmark datasets, 2026

Reference 18

Resolution: verified exact; arxiv_id, observed 2026-07-02T16:07:09.363592Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-04T06:34:03.388597+00:00.

Observation b67ad0f7-332c-4a73-a866-3fb38288be44 · outbound

This paper cites Halbrook, Costas A.

On the Promises and Limits of Multi-omics Integration for Deconvolution: The HADACA3 Benchmark Halbrook, Costas A

Reference 19

Resolution: unresolved; no resolver link, observed 2026-06-27T22:56:05.960715Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 53c1179e-0b91-4c56-9a40-4b1121077d3e · outbound

This paper cites Hallmarks of cancer—Then and now, and beyond.

On the Promises and Limits of Multi-omics Integration for Deconvolution: The HADACA3 Benchmark Hallmarks of cancer—Then and now, and beyond

Reference 20

Resolution: unresolved; no resolver link, observed 2026-06-27T22:56:05.960715Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 2624fe64-368a-47a7-abe0-13b3ab5c3c55 · outbound

This paper cites Accomando, Devin C.

On the Promises and Limits of Multi-omics Integration for Deconvolution: The HADACA3 Benchmark Accomando, Devin C

Reference 21

Resolution: unresolved; no resolver link, observed 2026-06-27T22:56:05.960715Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation df347c3c-7477-42f1-a29c-52203e819c85 · outbound

This paper cites Toast: improving reference-free cell composition estimation by cross-cell type differential analysis.

On the Promises and Limits of Multi-omics Integration for Deconvolution: The HADACA3 Benchmark Toast: improving reference-free cell composition estimation by cross-cell type differential analysis

Reference 22

Resolution: unresolved; no resolver link, observed 2026-06-27T22:56:05.960715Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 16cca264-50b1-45c9-adc6-d9ba53a3342d · outbound

This paper cites Distinct epigenetic landscapes underlie the pathobiology of pancreatic cancer subtypes.

On the Promises and Limits of Multi-omics Integration for Deconvolution: The HADACA3 Benchmark Distinct epigenetic landscapes underlie the pathobiology of pancreatic cancer subtypes

Reference 23

Resolution: unresolved; no resolver link, observed 2026-06-27T22:56:05.960715Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 045d60e4-e55f-49ba-a0f6-0478386a8a09 · outbound

This paper cites Sparse PLS discriminant analysis: biologically relevant feature selection and graphical displays for multiclass problems.

On the Promises and Limits of Multi-omics Integration for Deconvolution: The HADACA3 Benchmark Sparse PLS discriminant analysis: biologically relevant feature selection and graphical displays for multiclass problems

Reference 24

Resolution: unresolved; no resolver link, observed 2026-06-27T22:56:05.960715Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 7594df6d-11f8-4c92-ba93-030c41ed294a · outbound

This paper cites Unsupervised multiple kernel learning for heterogeneous data integration.

On the Promises and Limits of Multi-omics Integration for Deconvolution: The HADACA3 Benchmark Unsupervised multiple kernel learning for heterogeneous data integration

Reference 25

Resolution: unresolved; no resolver link, observed 2026-06-27T22:56:05.960715Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 3cabe092-afa3-4dd2-8dfe-161e5723b979 · outbound

This paper cites Culhane, and Amin Moghaddas Gholami.

On the Promises and Limits of Multi-omics Integration for Deconvolution: The HADACA3 Benchmark Culhane, and Amin Moghaddas Gholami

Reference 26

Resolution: unresolved; no resolver link, observed 2026-06-27T22:56:05.960715Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 81d6dd58-d868-4c75-a2b6-88afc12b405b · outbound

This paper cites Mullen and Ivo H.

On the Promises and Limits of Multi-omics Integration for Deconvolution: The HADACA3 Benchmark Mullen and Ivo H

Reference 27

Resolution: unresolved; no resolver link, observed 2026-06-27T22:56:05.960715Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation a1996643-24f7-47a0-a978-bd2e38775c98 · outbound

This paper cites Suh, Dong-gi Lee, Manu Shivakumar, Matthew E.

On the Promises and Limits of Multi-omics Integration for Deconvolution: The HADACA3 Benchmark Suh, Dong-gi Lee, Manu Shivakumar, Matthew E

Reference 28

Resolution: unresolved; no resolver link, observed 2026-06-27T22:56:05.960715Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 63298b7d-d3fe-4147-9216-8323bd3f02e3 · outbound

This paper cites Generation of multi-omic datasets using high-throughput molecular profiling of rna data in human pancreatic cancer (pdac).

On the Promises and Limits of Multi-omics Integration for Deconvolution: The HADACA3 Benchmark Generation of multi-omic datasets using high-throughput molecular profiling of rna data in human pancreatic cancer (pdac)

Reference 29

Resolution: unresolved; no resolver link, observed 2026-06-27T22:56:05.960715Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 0fe108fe-46a0-4312-b093-8db490b5208e · outbound

This paper cites Robust enumeration of cell subsets from tissue expression profiles.

On the Promises and Limits of Multi-omics Integration for Deconvolution: The HADACA3 Benchmark Robust enumeration of cell subsets from tissue expression profiles

Reference 30

Resolution: unresolved; no resolver link, observed 2026-06-27T22:56:05.960715Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation cb3c15b8-f1ce-4926-a576-43511e63295b · outbound

This paper cites Establishment of a pancreatic adenocar- cinoma molecular gradient (PAMG) that predicts the clinical outcome of pancreatic cancer.

On the Promises and Limits of Multi-omics Integration for Deconvolution: The HADACA3 Benchmark Establishment of a pancreatic adenocar- cinoma molecular gradient (PAMG) that predicts the clinical outcome of pancreatic cancer

Reference 31

Resolution: unresolved; no resolver link, observed 2026-06-27T22:56:05.960715Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation a8aae814-0170-4b0c-a428-f88f38ad9b1a · outbound

This paper cites Pancreatic Adenocarcinoma Therapeutic Targets Revealed by Tumor-Stroma Cross-Talk Analyses in Patient-Derived Xenografts.Cell Reports, 21(9):2458–2470, November 2017.

On the Promises and Limits of Multi-omics Integration for Deconvolution: The HADACA3 Benchmark Pancreatic Adenocarcinoma Therapeutic Targets Revealed by Tumor-Stroma Cross-Talk Analyses in Patient-Derived Xenografts.Cell Reports, 21(9):2458–2470, November 2017

Reference 32

Resolution: unresolved; no resolver link, observed 2026-06-27T22:56:05.960715Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 90eb6f08-1d9d-4964-b99a-119dc6d1aae2 · outbound

This paper cites Single-cell RNA-seq highlights intra-tumoral heterogeneity and malignant progression in pancreatic ductal adenocarcinoma.

On the Promises and Limits of Multi-omics Integration for Deconvolution: The HADACA3 Benchmark Single-cell RNA-seq highlights intra-tumoral heterogeneity and malignant progression in pancreatic ductal adenocarcinoma

Reference 33

Resolution: unresolved; no resolver link, observed 2026-06-27T22:56:05.960715Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 3ab9da61-f037-41a7-9369-655de793dc76 · outbound

This paper cites Simul- taneous enumeration of cancer and immune cell types from bulk tumor gene expression data.

On the Promises and Limits of Multi-omics Integration for Deconvolution: The HADACA3 Benchmark Simul- taneous enumeration of cancer and immune cell types from bulk tumor gene expression data

Reference 34

Resolution: unresolved; no resolver link, observed 2026-06-27T22:56:05.960715Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation f1fa09a5-deb5-46a1-aa9d-4e87ae8b09d5 · outbound

This paper cites Winter, Andrew W.

On the Promises and Limits of Multi-omics Integration for Deconvolution: The HADACA3 Benchmark Winter, Andrew W

Reference 35

Resolution: unresolved; no resolver link, observed 2026-06-27T22:56:05.960715Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 0da92528-0d37-4390-b18d-e7ce6de7b833 · outbound

This paper cites Rashid, Xianlu L.

On the Promises and Limits of Multi-omics Integration for Deconvolution: The HADACA3 Benchmark Rashid, Xianlu L

Reference 36

Resolution: unresolved; no resolver link, observed 2026-06-27T22:56:05.960715Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 176fd8ac-de64-4418-b87e-fb1bed8090ed · outbound

This paper cites Pacpaint: a histology-based deep learning model uncovers the extensive intratumor molecular heterogeneity of pancreatic adenocarcinoma.

On the Promises and Limits of Multi-omics Integration for Deconvolution: The HADACA3 Benchmark Pacpaint: a histology-based deep learning model uncovers the extensive intratumor molecular heterogeneity of pancreatic adenocarcinoma

Reference 37

Resolution: unresolved; no resolver link, observed 2026-06-27T22:56:05.960715Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 59caad39-d1db-42d4-b6a3-59ff13004d87 · outbound

This paper cites CATD: a reproducible pipeline for selecting cell-type deconvolution methods across tissues.

On the Promises and Limits of Multi-omics Integration for Deconvolution: The HADACA3 Benchmark CATD: a reproducible pipeline for selecting cell-type deconvolution methods across tissues

Reference 38

Resolution: unresolved; no resolver link, observed 2026-06-27T22:56:05.960715Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 5d9d7259-e28c-4de1-9d41-93ae96b29697 · outbound

This paper cites Approaching the holistic transcriptome—convolution and deconvolution in transcriptomics.

On the Promises and Limits of Multi-omics Integration for Deconvolution: The HADACA3 Benchmark Approaching the holistic transcriptome—convolution and deconvolution in transcriptomics

Reference 39

Resolution: unresolved; no resolver link, observed 2026-06-27T22:56:05.960715Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 96f1b056-ac61-4795-8be3-a05c858bc70f · outbound

This paper cites Spleen” samples from the GTEx portal (RNASeQCv1.1.9). RNA- seq Fibroblasts 527 GTEx (v8) “Cells – Cultured fibroblasts.

On the Promises and Limits of Multi-omics Integration for Deconvolution: The HADACA3 Benchmark Spleen” samples from the GTEx portal (RNASeQCv1.1.9). RNA- seq Fibroblasts 527 GTEx (v8) “Cells – Cultured fibroblasts

Reference 40

Resolution: verified exact; doi, observed 2026-06-27T23:01:21.985475Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-04T06:34:03.388597+00:00.

Observation 5aaa6348-7fb2-4448-93a6-89a121b619f5 · outbound

This paper cites Tumor subtypes: basal/classical inferred using PurIST [36].

On the Promises and Limits of Multi-omics Integration for Deconvolution: The HADACA3 Benchmark Tumor subtypes: basal/classical inferred using PurIST [36]

Reference 41

Resolution: unresolved; no resolver link, observed 2026-06-27T22:56:05.960715Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation fb1f4143-db1b-417d-ab75-38a6f73db1fc · outbound

This paper cites Note: no fibroblasts available.

On the Promises and Limits of Multi-omics Integration for Deconvolution: The HADACA3 Benchmark Note: no fibroblasts available

Reference 42

Resolution: unresolved; no resolver link, observed 2026-06-27T22:56:05.960715Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 10618ad8-c052-4059-a9f7-1fe9e772ac48 · outbound

This paper cites quantile.

On the Promises and Limits of Multi-omics Integration for Deconvolution: The HADACA3 Benchmark quantile

Reference 43

Resolution: unresolved; no resolver link, observed 2026-06-27T22:56:05.960715Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 92a92b26-a9af-4587-9723-b3b5685025a6 · outbound

This paper cites an unresolved cited work.

On the Promises and Limits of Multi-omics Integration for Deconvolution: The HADACA3 Benchmark Unresolved cited work

Reference 44

Resolution: unresolved; no resolver link, observed 2026-06-27T22:56:05.960715Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation c0e34932-2044-49af-8702-b224e24542b0 · outbound

This paper cites Let µpc be the mean methylation level observed in the bulk reference dataset for probe p and cell type c.

On the Promises and Limits of Multi-omics Integration for Deconvolution: The HADACA3 Benchmark Let µpc be the mean methylation level observed in the bulk reference dataset for probe p and cell type c

Reference 45

Resolution: unresolved; no resolver link, observed 2026-06-27T22:56:05.960715Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation f3ef390f-880d-4f58-8231-329c390c7659 · outbound

This paper cites , aki) represents the vector of proportions for the k cell types in sample i.

On the Promises and Limits of Multi-omics Integration for Deconvolution: The HADACA3 Benchmark , aki) represents the vector of proportions for the k cell types in sample i

Reference 46

Resolution: unresolved; no resolver link, observed 2026-06-27T22:56:05.960715Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 80f0fe36-8305-4078-b8a4-6df27b0110cd · outbound

This paper cites For each sample i, a total of K = 100 cells were allocated across cell types according to the proportion vector Ai = (a1i,.

On the Promises and Limits of Multi-omics Integration for Deconvolution: The HADACA3 Benchmark For each sample i, a total of K = 100 cells were allocated across cell types according to the proportion vector Ai = (a1i,

Reference 47

Resolution: unresolved; no resolver link, observed 2026-06-27T22:56:05.960715Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 3c477822-0b19-4087-9955-9915b9091fd2 · outbound

This paper cites an unresolved cited work.

On the Promises and Limits of Multi-omics Integration for Deconvolution: The HADACA3 Benchmark Unresolved cited work

Reference 48

Resolution: unresolved; no resolver link, observed 2026-06-27T22:56:05.960715Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 259c5d65-b339-459b-82e3-3106740ae84e · outbound

This paper cites Limitations.

On the Promises and Limits of Multi-omics Integration for Deconvolution: The HADACA3 Benchmark Limitations

Reference 49

Resolution: unresolved; no resolver link, observed 2026-06-27T22:56:05.960715Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 2374663c-2c1f-4877-840f-ffdd7c7cacc2 · outbound

This paper cites Guidelines: • The answer [N/A] means that the paper does not include theoretical results.

On the Promises and Limits of Multi-omics Integration for Deconvolution: The HADACA3 Benchmark Guidelines: • The answer [N/A] means that the paper does not include theoretical results

Reference 50

Resolution: unresolved; no resolver link, observed 2026-06-27T22:56:05.960715Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation f98b21b4-5ecc-4eec-b2dc-71f6ae15004f · outbound

This paper cites All datasets, preprocessing steps, and evaluation procedures are described in the paper Section 4 and 5 and supplementary materials.

On the Promises and Limits of Multi-omics Integration for Deconvolution: The HADACA3 Benchmark All datasets, preprocessing steps, and evaluation procedures are described in the paper Section 4 and 5 and supplementary materials

Reference 51

Resolution: unresolved; no resolver link, observed 2026-06-27T22:56:05.960715Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 1776202b-a77e-49d0-a18a-ec44e65335c0 · outbound

This paper cites The code used to simulate datasets and generate all figures presented in the paper and to reproduce the benchmark is also publicly available on GitHub [17].

On the Promises and Limits of Multi-omics Integration for Deconvolution: The HADACA3 Benchmark The code used to simulate datasets and generate all figures presented in the paper and to reproduce the benchmark is also publicly available on GitHub [17]

Reference 52

Resolution: unresolved; no resolver link, observed 2026-06-27T22:56:05.960715Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation d8cd9e60-2d2b-485c-97cd-805a3d67736c · outbound

This paper cites A detailed description of each method and its configuration is provided in the Supplementary Material (Section B.3).

On the Promises and Limits of Multi-omics Integration for Deconvolution: The HADACA3 Benchmark A detailed description of each method and its configuration is provided in the Supplementary Material (Section B.3)

Reference 53

Resolution: unresolved; no resolver link, observed 2026-06-27T22:56:05.960715Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation bcdab435-7c33-4225-8538-e30de50dadc5 · outbound

This paper cites an unresolved cited work.

On the Promises and Limits of Multi-omics Integration for Deconvolution: The HADACA3 Benchmark Unresolved cited work

Reference 54

Resolution: unresolved; no resolver link, observed 2026-06-27T22:56:05.960715Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation bfcda243-a865-40f1-b264-bf1ce5fb6808 · outbound

This paper cites All experiments were run on a high-performance computing cluster.

On the Promises and Limits of Multi-omics Integration for Deconvolution: The HADACA3 Benchmark All experiments were run on a high-performance computing cluster

Reference 55

Resolution: unresolved; no resolver link, observed 2026-06-27T22:56:05.960715Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 2747ce50-c53d-4d5f-be13-6af3c7978515 · outbound

This paper cites • If the authors answer [No], they should explain the special circumstances that require a deviation from the Code of Ethics.

On the Promises and Limits of Multi-omics Integration for Deconvolution: The HADACA3 Benchmark • If the authors answer [No], they should explain the special circumstances that require a deviation from the Code of Ethics

Reference 56

Resolution: unresolved; no resolver link, observed 2026-06-27T22:56:05.960715Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation a5b7908f-6afb-43b8-a31a-fbb01b028e7b · outbound

This paper cites Guidelines: • The answer [N/A] means that there is no societal impact of the work performed.

On the Promises and Limits of Multi-omics Integration for Deconvolution: The HADACA3 Benchmark Guidelines: • The answer [N/A] means that there is no societal impact of the work performed

Reference 57

Resolution: unresolved; no resolver link, observed 2026-06-27T22:56:05.960715Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 3f319f9a-cdda-4f52-8882-f5bc0aac1e94 · outbound

This paper cites The benchmark relies on publicly available biological datasets and simulated data.

On the Promises and Limits of Multi-omics Integration for Deconvolution: The HADACA3 Benchmark The benchmark relies on publicly available biological datasets and simulated data

Reference 58

Resolution: unresolved; no resolver link, observed 2026-06-27T22:56:05.960715Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 907ca7fb-c2fa-454f-a1ab-3605ecaf0dd2 · outbound

This paper cites Guidelines: • The answer [N/A] means that the paper does not use existing assets.

On the Promises and Limits of Multi-omics Integration for Deconvolution: The HADACA3 Benchmark Guidelines: • The answer [N/A] means that the paper does not use existing assets

Reference 59

Resolution: unresolved; no resolver link, observed 2026-06-27T22:56:05.960715Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 4917ef49-8408-4dd3-ab2b-6173362a37a2 · outbound

This paper cites Guidelines: • The answer [N/A] means that the paper does not release new assets.

On the Promises and Limits of Multi-omics Integration for Deconvolution: The HADACA3 Benchmark Guidelines: • The answer [N/A] means that the paper does not release new assets

Reference 60

Resolution: unresolved; no resolver link, observed 2026-06-27T22:56:05.960715Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 54eb3d02-d9c7-4a46-94d4-0cf6b298fe97 · outbound

This paper cites competition.

On the Promises and Limits of Multi-omics Integration for Deconvolution: The HADACA3 Benchmark competition

Reference 61

Resolution: unresolved; no resolver link, observed 2026-06-27T22:56:05.960715Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 29d31408-598a-4f33-9684-9dc60415e098 · outbound

This paper cites • Depending on the country in which research is conducted, IRB approval (or equivalent) may be required for any human subjects research.

On the Promises and Limits of Multi-omics Integration for Deconvolution: The HADACA3 Benchmark • Depending on the country in which research is conducted, IRB approval (or equivalent) may be required for any human subjects research

Reference 62

Resolution: unresolved; no resolver link, observed 2026-06-27T22:56:05.960715Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation bde80c00-9c69-45a5-8eab-88b4fa8d1520 · outbound

This paper cites an unresolved cited work.

On the Promises and Limits of Multi-omics Integration for Deconvolution: The HADACA3 Benchmark Unresolved cited work

Reference 63

Resolution: unresolved; no resolver link, observed 2026-06-27T22:56:05.960715Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Coverage vector

Reference resolution

Outbound references

Pith citing papers