Paper Citation Record · LEDGER

Rethinking Scientific Discovery in the Agentic Era

As of 5 August 2026, this Paper Citation Record lists 51 of 51 outbound references and 0 inbound Pith citation observations for arXiv:2607.03863.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2607.03863 v2

Coverage vector

measured 51 of 51 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-07-11T23:26:06.516204Z

measured 51 of 51 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-05T06:32:48.257954+00:00

measured 0 of 0 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: cited_works

Reference resolution

51 of 51 outbound references displayed

verified exact3
verified fuzzy0
unresolved48
parse uncertain0
malformed identifier0
metadata mismatch0

External citation measurements

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Outbound references

Observation 69ce0255-fa9a-4334-acc7-3e76f1abbfc9 · outbound

This paper cites Scientific discovery in the age of artificial intelligence.Nature, 620(7972): 47–60, 2023.

Rethinking Scientific Discovery in the Agentic Era Scientific discovery in the age of artificial intelligence.Nature, 620(7972): 47–60, 2023

Reference 1

Resolution: unresolved; no resolver link, observed 2026-07-11T23:26:06.516204Z

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Observation 767d7c34-ef4e-4bfd-a202-49dcb6b3a643 · outbound

This paper cites Highly accurate protein structure prediction with alphafold.nature, 596(7873):583–589, 2021.

Rethinking Scientific Discovery in the Agentic Era Highly accurate protein structure prediction with alphafold.nature, 596(7873):583–589, 2021

Reference 2

Resolution: unresolved; no resolver link, observed 2026-07-11T23:26:06.516204Z

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Observation 90f10d21-5f54-431f-acf4-8e0942a1a08e · outbound

This paper cites De novo design of protein structure and function with rfdiffusion.Nature, 620(7976):1089–1100, 2023.

Rethinking Scientific Discovery in the Agentic Era De novo design of protein structure and function with rfdiffusion.Nature, 620(7976):1089–1100, 2023

Reference 3

Resolution: unresolved; no resolver link, observed 2026-07-11T23:26:06.516204Z

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Observation c8c7231c-c92b-4f5b-85c7-675e07341854 · outbound

This paper cites Language agents achieve superhuman synthesis of scientific knowledge.

Rethinking Scientific Discovery in the Agentic Era Language agents achieve superhuman synthesis of scientific knowledge

Reference 4

Resolution: unresolved; no resolver link, observed 2026-07-11T23:26:06.516204Z

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Observation 335b19fb-56f0-4f39-a0de-fa715d9bc21a · outbound

This paper cites Scaling deep learning for materials discovery.Nature, 624(7990):80–85, 2023.

Rethinking Scientific Discovery in the Agentic Era Scaling deep learning for materials discovery.Nature, 624(7990):80–85, 2023

Reference 5

Resolution: unresolved; no resolver link, observed 2026-07-11T23:26:06.516204Z

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Observation fe27f47f-b762-4ca7-8af1-475a25c0b8c5 · outbound

This paper cites The (R)evolution of Scientific Workflows in the Agentic AI Era: Towards Autonomous Science.

Rethinking Scientific Discovery in the Agentic Era The (R)evolution of Scientific Workflows in the Agentic AI Era: Towards Autonomous Science

Reference 6

Resolution: unresolved; no resolver link, observed 2026-07-11T23:26:06.516204Z

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Observation b3bc21db-0e85-437b-a345-13652fd0e40d · outbound

This paper cites Towards end-to-end automation of ai research.Nature, 651(8107):914–919, 2026.

Rethinking Scientific Discovery in the Agentic Era Towards end-to-end automation of ai research.Nature, 651(8107):914–919, 2026

Reference 7

Resolution: unresolved; no resolver link, observed 2026-07-11T23:26:06.516204Z

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Observation 826c9ce6-ebb6-4211-bb0f-3459b379a1c3 · outbound

This paper cites Role of the human-in-the-loop in emerging self-driving laboratories for heterogeneous catalysis.Nature Catalysis, 8(1):13–19, 2025.

Rethinking Scientific Discovery in the Agentic Era Role of the human-in-the-loop in emerging self-driving laboratories for heterogeneous catalysis.Nature Catalysis, 8(1):13–19, 2025

Reference 8

Resolution: unresolved; no resolver link, observed 2026-07-11T23:26:06.516204Z

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Observation 21805c6a-e140-4927-9b80-8c2f6afebb3c · outbound

This paper cites A review of prominent paradigms for llm-based agents: Tool use, planning (including rag), and feedback learning.

Rethinking Scientific Discovery in the Agentic Era A review of prominent paradigms for llm-based agents: Tool use, planning (including rag), and feedback learning

Reference 9

Resolution: unresolved; no resolver link, observed 2026-07-11T23:26:06.516204Z

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Observation 3efc3c53-1f6e-418f-acba-4ba2d3146545 · outbound

This paper cites Towards a Science of Scaling Agent Systems.

Rethinking Scientific Discovery in the Agentic Era Towards a Science of Scaling Agent Systems

Reference 10

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Observation 2756c341-175b-4ed7-8513-05bc740ab82f · outbound

This paper cites Crystal graph convolutional neural networks for an accurate and interpretable prediction of material properties.Physical review letters, 120(14):145301, 2018.

Rethinking Scientific Discovery in the Agentic Era Crystal graph convolutional neural networks for an accurate and interpretable prediction of material properties.Physical review letters, 120(14):145301, 2018

Reference 11

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Observation 26635db5-d093-45ef-a696-7bf6e8ab5957 · outbound

This paper cites Benchmarking materials property prediction methods: the matbench test set and automatminer reference algorithm.npj Computational Materials, 6(1): 138, 2020.

Rethinking Scientific Discovery in the Agentic Era Benchmarking materials property prediction methods: the matbench test set and automatminer reference algorithm.npj Computational Materials, 6(1): 138, 2020

Reference 12

Resolution: unresolved; no resolver link, observed 2026-07-11T23:26:06.516204Z

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Observation 01ad2219-6520-4147-b6af-bbbf73eef504 · outbound

This paper cites From ai for science to agentic science: A survey on autonomous scientific discovery.arXiv preprint arXiv:2508.14111, 2025.

Rethinking Scientific Discovery in the Agentic Era From ai for science to agentic science: A survey on autonomous scientific discovery.arXiv preprint arXiv:2508.14111, 2025

Reference 13

Resolution: unresolved; no resolver link, observed 2026-07-11T23:26:06.516204Z

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Observation 3464021a-a076-4efc-89f0-20cc238df221 · outbound

This paper cites The future of self-driving laboratories: from human in the loop interactive ai to gamification.

Rethinking Scientific Discovery in the Agentic Era The future of self-driving laboratories: from human in the loop interactive ai to gamification

Reference 14

Resolution: unresolved; no resolver link, observed 2026-07-11T23:26:06.516204Z

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Observation d095fb58-3d2e-4249-acbb-d7997165aacf · outbound

This paper cites ChemCrow: Augmenting large-language models with chemistry tools.

Rethinking Scientific Discovery in the Agentic Era ChemCrow: Augmenting large-language models with chemistry tools

Reference 15

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Observation 6ffcc356-eaa8-4b11-b3ba-34609143a9b5 · outbound

This paper cites Autonomouschemicalresearchwithlargelanguage models.Nature, 624(7992):570–578, 2023.

Rethinking Scientific Discovery in the Agentic Era Autonomouschemicalresearchwithlargelanguage models.Nature, 624(7992):570–578, 2023

Reference 16

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Observation 8ac86b2d-a114-4ab5-bf33-f1b61f6567de · outbound

This paper cites AI-Researcher: Autonomous Scientific Innovation.

Rethinking Scientific Discovery in the Agentic Era AI-Researcher: Autonomous Scientific Innovation

Reference 17

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Observation ef7d8070-b09c-4ec3-8e65-2050a49b88f5 · outbound

This paper cites The AI Scientist-v2: Workshop-Level Automated Scientific Discovery via Agentic Tree Search.

Rethinking Scientific Discovery in the Agentic Era The AI Scientist-v2: Workshop-Level Automated Scientific Discovery via Agentic Tree Search

Reference 18

Resolution: unresolved; no resolver link, observed 2026-07-11T23:26:06.516204Z

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Observation d5190505-76a2-4fb6-9093-7ace334ce1b0 · outbound

This paper cites InternAgent: When Agent Becomes the Scientist -- Building Closed-Loop System from Hypothesis to Verification.

Rethinking Scientific Discovery in the Agentic Era InternAgent: When Agent Becomes the Scientist -- Building Closed-Loop System from Hypothesis to Verification

Reference 19

Resolution: unresolved; no resolver link, observed 2026-07-11T23:26:06.516204Z

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Observation 87c5f734-2bdb-473d-a5ae-71c937f17814 · outbound

This paper cites Autoresearchclaw: Fullyautonomousresearchfromideatopaper,2026.

Rethinking Scientific Discovery in the Agentic Era Autoresearchclaw: Fullyautonomousresearchfromideatopaper,2026

Reference 20

Resolution: unresolved; no resolver link, observed 2026-07-11T23:26:06.516204Z

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Observation 59e687f4-9183-4022-802d-67561e919777 · outbound

This paper cites Evoscientist: Towards multi-agent evolving ai scientists for end-to-end scientific discovery, 2026.

Rethinking Scientific Discovery in the Agentic Era Evoscientist: Towards multi-agent evolving ai scientists for end-to-end scientific discovery, 2026

Reference 21

Resolution: unresolved; no resolver link, observed 2026-07-11T23:26:06.516204Z

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Observation ed3e88b8-da66-42a0-8eeb-a48bc49fb08b · outbound

This paper cites an unresolved cited work.

Rethinking Scientific Discovery in the Agentic Era Unresolved cited work

Reference 22

Resolution: unresolved; no resolver link, observed 2026-07-11T23:26:06.516204Z

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Observation 943ed403-03b7-4ce7-b471-ff855d2447c0 · outbound

This paper cites Wang, Lee Marom, Subhadeep Pal, Rachel K.

Rethinking Scientific Discovery in the Agentic Era Wang, Lee Marom, Subhadeep Pal, Rachel K

Reference 23

Resolution: unresolved; no resolver link, observed 2026-07-11T23:26:06.516204Z

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Observation 81792a6d-95d4-47cb-925f-7534236e7ae1 · outbound

This paper cites ARIS: Autonomous Research via Adversarial Multi-Agent Collaboration.

Rethinking Scientific Discovery in the Agentic Era ARIS: Autonomous Research via Adversarial Multi-Agent Collaboration

Reference 24

Resolution: unresolved; no resolver link, observed 2026-07-11T23:26:06.516204Z

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Observation e5a48133-77b0-49ce-a359-e5b2c59fc6ea · outbound

This paper cites AIOS: LLM Agent Operating System.

Rethinking Scientific Discovery in the Agentic Era AIOS: LLM Agent Operating System

Reference 25

Resolution: unresolved; no resolver link, observed 2026-07-11T23:26:06.516204Z

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Observation 3c3d4bcf-39ad-441b-b4ff-f757d07f0ddf · outbound

This paper cites A survey on the memory mechanism of large language model-based agents.ACM T ransactions on Information Systems, 43(6):1–47, 2025.

Rethinking Scientific Discovery in the Agentic Era A survey on the memory mechanism of large language model-based agents.ACM T ransactions on Information Systems, 43(6):1–47, 2025

Reference 26

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Observation b60f52ff-907f-46ad-b866-96a7e52ce62a · outbound

This paper cites Agenthallu: Benchmarking automated hallucination attribution of llm-based agents.arXiv preprint arXiv:2601.06818, 2026.

Rethinking Scientific Discovery in the Agentic Era Agenthallu: Benchmarking automated hallucination attribution of llm-based agents.arXiv preprint arXiv:2601.06818, 2026

Reference 27

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Observation ae642fd7-613d-408f-8986-9d742e332e7e · outbound

This paper cites Evaluation and benchmarking of llm agents: A survey.

Rethinking Scientific Discovery in the Agentic Era Evaluation and benchmarking of llm agents: A survey

Reference 28

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Observation f8576c05-204d-46c5-a07e-87d92ccf17bd · outbound

This paper cites Hart, Michal Jahnatek, Roman V.

Rethinking Scientific Discovery in the Agentic Era Hart, Michal Jahnatek, Roman V

Reference 29

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Observation 1818342f-d081-4931-9e96-8bcc7519aaff · outbound

This paper cites an unresolved cited work.

Rethinking Scientific Discovery in the Agentic Era Unresolved cited work

Reference 30

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Observation dedef844-3617-4fcf-95c3-cdd5638421a4 · outbound

This paper cites Graph networks as a universal machine learning framework for molecules and crystals.Chemistry of Materials, 31(9):3564–3572, April 2019.

Rethinking Scientific Discovery in the Agentic Era Graph networks as a universal machine learning framework for molecules and crystals.Chemistry of Materials, 31(9):3564–3572, April 2019

Reference 31

Resolution: unresolved; no resolver link, observed 2026-07-11T23:26:06.516204Z

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Observation e5839a75-6eb8-4da4-906b-60ae37c1b319 · outbound

This paper cites A universal graph deep learning interatomic potential for the periodic table.Nature Computational Science, 2(11):718–728, November 2022.

Rethinking Scientific Discovery in the Agentic Era A universal graph deep learning interatomic potential for the periodic table.Nature Computational Science, 2(11):718–728, November 2022

Reference 32

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Observation 95be2f99-3a82-4189-8f58-f1e96d08e5c4 · outbound

This paper cites Strubbe, and Isaac Tamblyn.

Rethinking Scientific Discovery in the Agentic Era Strubbe, and Isaac Tamblyn

Reference 33

Resolution: verified exact; doi, observed 2026-07-11T23:28:21.261998Z

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Observation 883f2ec9-4294-46f4-aa57-c96996991ab8 · outbound

This paper cites Yi, Conrard Giresse Tetsassi Feugmo, Anna Klinkova, Kyla Sask, Agustinus Kristiadi, Boyu Wang, Elizabeth R.

Rethinking Scientific Discovery in the Agentic Era Yi, Conrard Giresse Tetsassi Feugmo, Anna Klinkova, Kyla Sask, Agustinus Kristiadi, Boyu Wang, Elizabeth R

Reference 34

Resolution: verified exact; doi, observed 2026-07-11T23:28:21.226206Z

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Observation bde56735-9476-488d-af7d-a52e9d2c2f51 · outbound

This paper cites A Survey of Generative AI for de novo Drug Design: New Frontiers in Molecule and Protein Generation.

Rethinking Scientific Discovery in the Agentic Era A Survey of Generative AI for de novo Drug Design: New Frontiers in Molecule and Protein Generation

Reference 35

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Observation 5d28c149-79b1-40a8-8994-47ac7602c90b · outbound

This paper cites Junction Tree Variational Autoencoder for Molecular Graph Generation.

Rethinking Scientific Discovery in the Agentic Era Junction Tree Variational Autoencoder for Molecular Graph Generation

Reference 36

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Observation eb69ce07-4e3e-4a8d-9c6c-b080956f98f6 · outbound

This paper cites Molecular De Novo Design through Deep Reinforcement Learning.

Rethinking Scientific Discovery in the Agentic Era Molecular De Novo Design through Deep Reinforcement Learning

Reference 37

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Observation cdb7e2b3-f74e-4bff-9be9-b54054364db3 · outbound

This paper cites Richard Bickerton, Gaia V.

Rethinking Scientific Discovery in the Agentic Era Richard Bickerton, Gaia V

Reference 38

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Observation fe6d1ae8-e9b4-48c7-88c4-6b8de8dcc72c · outbound

This paper cites Dauparas, I.

Rethinking Scientific Discovery in the Agentic Era Dauparas, I

Reference 39

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Observation 3ab1db4a-1169-48e6-885a-203bf7568250 · outbound

This paper cites Kyro, Tianyin Qiu, and Victor S.

Rethinking Scientific Discovery in the Agentic Era Kyro, Tianyin Qiu, and Victor S

Reference 40

Resolution: unresolved; no resolver link, observed 2026-07-11T23:26:06.516204Z

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Observation f9b4eca6-a461-412b-8c3e-17a750ef95cb · outbound

This paper cites A Model-Centric Review of Deep Learning for Protein Design.

Rethinking Scientific Discovery in the Agentic Era A Model-Centric Review of Deep Learning for Protein Design

Reference 41

Resolution: unresolved; no resolver link, observed 2026-07-11T23:26:06.516204Z

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Observation 7e2234e2-955e-4760-991e-a6151335619a · outbound

This paper cites AlphaFolding: 4D Diffusion for Dynamic Protein Structure Prediction with Reference and Motion Guidance.

Rethinking Scientific Discovery in the Agentic Era AlphaFolding: 4D Diffusion for Dynamic Protein Structure Prediction with Reference and Motion Guidance

Reference 42

Resolution: unresolved; no resolver link, observed 2026-07-11T23:26:06.516204Z

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Observation 9aefe897-6469-4141-8fe5-4adc855dd38a · outbound

This paper cites Schneider, Andrew W.

Rethinking Scientific Discovery in the Agentic Era Schneider, Andrew W

Reference 43

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Observation 3316c4a7-0c9c-4d3e-9f88-e3532def8c90 · outbound

This paper cites Kimi-Audio Technical Report.

Rethinking Scientific Discovery in the Agentic Era Kimi-Audio Technical Report

Reference 44

Resolution: unresolved; no resolver link, observed 2026-07-11T23:26:06.516204Z

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Observation bbf2eed4-e832-471d-aafa-f50e8b9b390b · outbound

This paper cites nex-n1.1, 2025.

Rethinking Scientific Discovery in the Agentic Era nex-n1.1, 2025

Reference 45

Resolution: unresolved; no resolver link, observed 2026-07-11T23:26:06.516204Z

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Observation ea5e5258-68f8-456c-a27f-893a8d47e44d · outbound

This paper cites CMPhysBench: A Benchmark for Evaluating Large Language Models in Condensed Matter Physics.

Rethinking Scientific Discovery in the Agentic Era CMPhysBench: A Benchmark for Evaluating Large Language Models in Condensed Matter Physics

Reference 46

Resolution: unresolved; no resolver link, observed 2026-07-11T23:26:06.516204Z

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Observation 39081d19-f33f-49b9-8047-d576eac8ee6d · outbound

This paper cites GeLLMO: Generalizing Large Language Models for Multi-property Molecule Optimization.

Rethinking Scientific Discovery in the Agentic Era GeLLMO: Generalizing Large Language Models for Multi-property Molecule Optimization

Reference 47

Resolution: unresolved; no resolver link, observed 2026-07-11T23:26:06.516204Z

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Observation 4de0d386-5db2-4e84-b8f3-c74d6442e2f6 · outbound

This paper cites Deep batch active learning for drug discovery.

Rethinking Scientific Discovery in the Agentic Era Deep batch active learning for drug discovery

Reference 48

Resolution: verified exact; doi, observed 2026-07-11T23:28:21.255116Z

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Observation d32e969d-f4bd-48e5-80e2-143d07c74f87 · outbound

This paper cites Llms for bayesian optimization in scientific domains: Are we there yet?,.

Rethinking Scientific Discovery in the Agentic Era Llms for bayesian optimization in scientific domains: Are we there yet?,

Reference 49

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Observation fd228b5e-7d9b-4fe0-bde6-5a4c3d947ac3 · outbound

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Rethinking Scientific Discovery in the Agentic Era Unresolved cited work

Reference 50

Resolution: unresolved; no resolver link, observed 2026-07-11T23:26:06.516204Z

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Observation 7f7e5a14-b378-4790-bb02-52bb36642b06 · outbound

This paper cites Efficient nonmyopic active search.

Rethinking Scientific Discovery in the Agentic Era Efficient nonmyopic active search

Reference 51

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Pith citing papers

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