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Paper Citation Record · LEDGER

Compiling Bioinformatics Recurrences

As of 7 August 2026, this Paper Citation Record lists 73 of 73 outbound references and 0 inbound Pith citation observations for arXiv:2607.06225.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2607.06225 v1

Coverage vector

measured 73 of 73 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-07-11T11:50:26.030339Z

measured 73 of 73 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-07T06:34:17.273281+00:00

measured 0 of 0 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: cited_works

Reference resolution

73 of 73 outbound references displayed

  • verified exact50
  • verified fuzzy4
  • unresolved12
  • parse uncertain0
  • malformed identifier3
  • metadata mismatch4

External citation measurements

No source-named external measurement is stored.

Outbound references

Observation aceef591-c946-4bf2-bc04-cf7a36c0ba84 · outbound

This paper cites an unresolved cited work.

Compiling Bioinformatics Recurrences Unresolved cited work

Reference 1

Resolution
verified exact
doi, observed 2026-07-08T12:54:52.767531Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:075f9f2788702a3f2b1576f65089fa303cd5b8f69c05d27de203d3269f0e4cf6

Observation 792a6bef-d4dd-4963-ab66-f6026f1dee8c · outbound

This paper cites Altschul, Thomas L.

Compiling Bioinformatics Recurrences Altschul, Thomas L

Reference 2

Resolution
verified exact
doi, observed 2026-07-08T12:54:52.717489Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:09d0a90d6af4f01f89d6dc52ecce668eea684556ca7d681d7fa5b45606759ef8

Observation d78eed77-8bb2-46f8-9835-128e37032963 · outbound

This paper cites 1993.Loop Transformations for Restructuring Compilers.

Compiling Bioinformatics Recurrences 1993.Loop Transformations for Restructuring Compilers

Reference 3

Resolution
verified fuzzy
raw_fallback, observed 2026-07-08T12:54:53.051617Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:965901b58657d4194ebe531e61446e20f4472f99e867a8a1bba17dc411f6d67e

Observation 4cf69d30-6b5b-4b57-9697-ee02ec2fafa1 · outbound

This paper cites an unresolved cited work.

Compiling Bioinformatics Recurrences Unresolved cited work

Reference 4

Resolution
unresolved
raw_fallback, observed 2026-07-08T12:54:53.038795Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:c7412616c74db9feb6998318d1a98dbf01b1f6d90b92bbea785e5e689e137c9e

Observation 669dc366-d0b9-446d-bfab-e961aa6eb5ff · outbound

This paper cites an unresolved cited work.

Compiling Bioinformatics Recurrences Unresolved cited work

Reference 5

Resolution
unresolved
raw_fallback, observed 2026-07-08T12:54:53.047403Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:40fc7b71c48e584e163dda88e62703b0c1af627d71dc50dc84877392183e1c50

Observation 50ef272a-56e1-47a7-ab48-2ad9f161df83 · outbound

This paper cites Mathews, and Max Ward.

Compiling Bioinformatics Recurrences Mathews, and Max Ward

Reference 6

Resolution
verified exact
arxiv_id, observed 2026-07-08T12:54:52.745614Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:24216a0032b69b348e90a825a151bff8ecb9ff604f2f8f96351f7ca538956766

Observation d937613c-6b05-45d9-be57-5af867559aa2 · outbound

This paper cites BMC Bioinformatics , year = 2016, volume = 17, number = 1, month =.

Compiling Bioinformatics Recurrences BMC Bioinformatics , year = 2016, volume = 17, number = 1, month =

Reference 7

Resolution
verified exact
doi, observed 2026-07-08T12:54:52.798127Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:7a1d1f52f35e10e349a118a0c819a8c6a8a9a0d0389c415e6c65eeed55393315

Observation 249a8408-fef9-459e-bdea-7b52ffc60004 · outbound

This paper cites an unresolved cited work.

Compiling Bioinformatics Recurrences Unresolved cited work

Reference 8

Resolution
verified exact
doi, observed 2026-07-08T12:54:52.725924Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:a16f5c348035d3270a8ab087fd1accabd884739251339ceadc61f56a561e032a

Observation 661d5806-8883-4072-9c9f-ca4ebf7d2e7b · outbound

This paper cites an unresolved cited work.

Compiling Bioinformatics Recurrences Unresolved cited work

Reference 9

Resolution
unresolved
raw_fallback, observed 2026-07-08T12:54:53.072759Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:ef87929b194d1f070ec10247e66c7f52a1a7085e7019f036cc09676a0aed49eb

Observation 1ba13cc8-e5f6-4099-a267-b5b1cb023787 · outbound

This paper cites doi:10.1093/bioinformatics/btaf112.

Compiling Bioinformatics Recurrences doi:10.1093/bioinformatics/btaf112

Reference 10

Resolution
verified exact
doi, observed 2026-07-08T12:54:52.785549Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:b3e8ccf31c2064a3afdfc0d6b84d3527d45084517ce9ecf2b9b2fd56940e1432

Observation 34764908-252b-449c-acc6-d5bb74dd54b9 · outbound

This paper cites Eddy, Anders Krogh, and Graeme Mitchison.

Compiling Bioinformatics Recurrences Eddy, Anders Krogh, and Graeme Mitchison

Reference 11

Resolution
verified fuzzy
raw_fallback, observed 2026-07-08T12:54:53.070354Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:3f3d1d6c6db9b84bf8aeccaff282d7bb9e49079c440b24092a7c5a4baf821153

Observation 43031601-44d2-4cf0-9651-6167c5eb047d · outbound

This paper cites an unresolved cited work.

Compiling Bioinformatics Recurrences Unresolved cited work

Reference 12

Resolution
unresolved
raw_fallback, observed 2026-07-08T12:54:53.043264Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:f69f32c4c4e060985d51a500593c4ebac2f84f22469135b4cd853855b3326e1c

Observation 0f07ebcb-610c-4c7e-b9a4-86ffa5a1c7e7 · outbound

This paper cites Bioinformatics , year = 2006, volume = 23, number = 2, month =.

Compiling Bioinformatics Recurrences Bioinformatics , year = 2006, volume = 23, number = 2, month =

Reference 13

Resolution
verified exact
doi, observed 2026-07-08T12:54:52.805037Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:297b5cf4904b690b58e3411ee14af1aa71216bdf858c0e59e981754e14048573

Observation 28f2996b-b715-4947-9f10-69137bdff0e4 · outbound

This paper cites an unresolved cited work.

Compiling Bioinformatics Recurrences Unresolved cited work

Reference 14

Resolution
verified exact
doi, observed 2026-07-08T12:54:52.793485Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:263479b4f961c4305e0a8cf570cda474ab3351cec32afc183045f1b103550a15

Observation 2f513041-0345-4911-a8a0-1c5392c2f961 · outbound

This paper cites an unresolved cited work.

Compiling Bioinformatics Recurrences Unresolved cited work

Reference 15

Resolution
unresolved
raw_fallback, observed 2026-07-08T12:54:53.041321Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:af1d22ff3226efa7e135d5e752c6d8dd9a4385704d5e2ad235cb62bd8b4647cd

Observation 3de7863f-b1b9-4573-a57a-c9ce0127c174 · outbound

This paper cites doi: 10.1007/BF01734359.

Compiling Bioinformatics Recurrences doi: 10.1007/BF01734359

Reference 16

Resolution
verified exact
doi, observed 2026-07-08T12:54:52.702989Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:3d5154069c2d005abe5991973af8e1f557d6b7f1b33db037b176dd2d361b52b6

Observation 6daab0ef-00c6-44a3-819e-b9424c0075f6 · outbound

This paper cites an unresolved cited work.

Compiling Bioinformatics Recurrences Unresolved cited work

Reference 17

Resolution
verified exact
doi, observed 2026-07-08T12:54:52.790618Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:b5519ca3e966fe65f07823512fa5ff8f1b98e4c3c5de33f46c2bf857c348c2a6

Observation 4805ab82-d045-4ed3-b7b8-e225c175105b · outbound

This paper cites Generalized Slow Roll for Tensors.

Compiling Bioinformatics Recurrences Generalized Slow Roll for Tensors

Reference 18

Resolution
metadata mismatch
local_arxiv, observed 2026-07-08T12:54:52.669845Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-11T11:50:26.030339Z digest=sha256:95f6a7c0037342530ca1a0acf3d2be67bd35799ee95ee8c47fc91f67677bc58e

Observation 1e4f50e7-7605-44ea-8c39-0d1bc2cff95d · outbound

This paper cites Journal of Molecular Biology , year = 1982, volume = 162, number = 3, month =.

Compiling Bioinformatics Recurrences Journal of Molecular Biology , year = 1982, volume = 162, number = 3, month =

Reference 19

Resolution
verified exact
doi, observed 2026-07-08T12:54:52.786668Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:9e722ac383c4929d1c174f9b3adf2ee093572ea96cf092f3a22ad9ff14623768

Observation 9fd5116e-9729-4bc3-ba35-3c1e490943de · outbound

This paper cites 1997.Algorithms on Strings, Trees, and Sequences: Computer Science and Computational Biology.

Compiling Bioinformatics Recurrences 1997.Algorithms on Strings, Trees, and Sequences: Computer Science and Computational Biology

Reference 20

Resolution
verified fuzzy
raw_fallback, observed 2026-07-08T12:54:53.055877Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:ffffeb867c96acba1cf5a0942a501835c0f766bcd1ed05b6e1b27ffc00e440af

Observation 66abd0d2-9804-459b-ae06-cc81a61ba065 · outbound

This paper cites doi: 10.1093/bioinformatics/bty407.

Compiling Bioinformatics Recurrences doi: 10.1093/bioinformatics/bty407

Reference 21

Resolution
verified exact
doi, observed 2026-07-08T12:54:52.791682Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:36f3fbfe5d365ac04f8a3156cbc1cf90644bfe01e5890b387410b14b6ce63830

Observation 67473219-0ec5-419a-91a7-cc5b8134fd68 · outbound

This paper cites an unresolved cited work.

Compiling Bioinformatics Recurrences Unresolved cited work

Reference 22

Resolution
unresolved
raw_fallback, observed 2026-07-08T12:54:53.045202Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:cd7f0888271d1eb1733e33349fb9f1e6138cba41b529cd236e02972683c155ec

Observation 2c3405b9-d4f9-4541-bec6-2d23389e38a3 · outbound

This paper cites Rodriguez-R, Adam M.

Compiling Bioinformatics Recurrences Rodriguez-R, Adam M

Reference 23

Resolution
verified exact
doi, observed 2026-07-08T12:54:52.652197Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:67fa7f5c211027fce36121b1be76d829bcc3792e8db4739583c0cfd81cc4a34e

Observation 45a11b99-59e3-49d8-b106-d82393bdc688 · outbound

This paper cites InACM SIGPLAN Conference on Object-Oriented Programming, Systems, Languages, and Applications.

Compiling Bioinformatics Recurrences InACM SIGPLAN Conference on Object-Oriented Programming, Systems, Languages, and Applications

Reference 24

Resolution
verified exact
doi, observed 2026-07-08T12:54:52.769386Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:898973c0ca94e48941675f1ab2eddc5524e26251d0e841e17f9958a421e9a94f

Observation b2eb57dd-1670-4985-951a-cafe553d8b1d · outbound

This paper cites Bioinformatics , year = 2024, editor =.

Compiling Bioinformatics Recurrences Bioinformatics , year = 2024, editor =

Reference 25

Resolution
verified exact
doi, observed 2026-07-08T12:54:52.762118Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:0f3bb725b6cebcc585aff3044d13a632fedaed69293371a4c373ee1fe9a0a9cf

Observation a4bc0c7e-775f-4b7a-a1c7-c635a1fccf25 · outbound

This paper cites an unresolved cited work.

Compiling Bioinformatics Recurrences Unresolved cited work

Reference 26

Resolution
verified exact
arxiv_id, observed 2026-07-08T12:54:52.721397Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:96acf7de8a9b0d696d5059d1d3eebf3cfe785df9582b32524205cdf95c369703

Observation 50eee1cb-4c59-4681-81b3-b3e06fa74f63 · outbound

This paper cites an unresolved cited work.

Compiling Bioinformatics Recurrences Unresolved cited work

Reference 27

Resolution
verified exact
doi, observed 2026-07-08T12:54:52.751383Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:3b92acf3fba8e8192902259345a1663dde308cbbb4ef4448ee1dc10e2618b914

Observation 9af34855-fdbd-448b-bc47-ed4f317ce48d · outbound

This paper cites Walenz, Konstantin Berlin, Jason R.

Compiling Bioinformatics Recurrences Walenz, Konstantin Berlin, Jason R

Reference 28

Resolution
verified exact
doi, observed 2026-07-08T12:54:52.803117Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:076a7692f7bc53187ee69516753c15ba58c5afab72c61d340b44d5ec36e86550

Observation efcee3bc-6855-4de6-a54c-9e0cddac84e2 · outbound

This paper cites an unresolved cited work.

Compiling Bioinformatics Recurrences Unresolved cited work

Reference 29

Resolution
verified exact
arxiv_id, observed 2026-07-08T12:54:52.710840Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:4fb544d6fe48e4e3f904746af927a9e973c5bfd27b8cf019ab8222761c4e039e

Observation 7f569b3f-563c-47ef-8963-1429799c5cad · outbound

This paper cites Salzberg.

Compiling Bioinformatics Recurrences Salzberg

Reference 30

Resolution
verified exact
doi, observed 2026-07-08T12:54:52.773401Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:276bc2477736faab241edd350310c778c52cc8f992d0b002684abbee271c45a9

Observation e74f79cd-8b6d-4743-b409-7d74e8071231 · outbound

This paper cites Bioinformatics , year = 2018, editor =.

Compiling Bioinformatics Recurrences Bioinformatics , year = 2018, editor =

Reference 31

Resolution
verified exact
doi, observed 2026-07-08T12:54:52.749524Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:312e8bf85507dbeae939aa00b2736db0087e2b572504a642d8d25681328ceb85

Observation bd3175d9-fedd-45ac-a6d5-5cb1f5513fd6 · outbound

This paper cites Li, and R.

Compiling Bioinformatics Recurrences Li, and R

Reference 32

Resolution
verified exact
doi, observed 2026-07-08T12:54:52.777281Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:fbdc93878735379aa4bbb06f0c09a7d7f0bfd2f7e3ea93cbda4e633481124945

Observation 8ec76848-d0f8-4ff1-bff8-7ddaf35916b7 · outbound

This paper cites an unresolved cited work.

Compiling Bioinformatics Recurrences Unresolved cited work

Reference 33

Resolution
verified exact
doi, observed 2026-07-08T12:54:52.722589Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:65014ea82484be9b5f41c17f5fdfa754186ffd59e7f3c39ee11621b53f46a14d

Observation 09c285cf-bba3-4ee6-8179-ea9b7b0984ff · outbound

This paper cites an unresolved cited work.

Compiling Bioinformatics Recurrences Unresolved cited work

Reference 34

Resolution
verified exact
doi, observed 2026-07-08T12:54:52.720482Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:710443726ceb34d1926f258ebe32736764279f9d68a967d6713a75799c828eba

Observation c2f02ab9-e88b-41a4-b9b1-93d607a30513 · outbound

This paper cites Maskell, and Bertil Schmidt.

Compiling Bioinformatics Recurrences Maskell, and Bertil Schmidt

Reference 35

Resolution
malformed identifier
doi_truncated, observed 2026-07-08T12:54:52.731660Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:6a10390d1dfee89d67550dfef7078d0e37023a36890fe61b06e7f539d6e8ba25

Observation 9f7ace01-35dd-4e99-835e-4c9b3ea789c0 · outbound

This paper cites an unresolved cited work.

Compiling Bioinformatics Recurrences Unresolved cited work

Reference 36

Resolution
verified exact
arxiv_id, observed 2026-07-08T12:54:52.815672Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:e3830b2e2df3d4e78267248b7b9393b3dc7234be75832354d8cd66159613943f

Observation 9c7eaed4-6d6f-46de-9864-e07d85323d4c · outbound

This paper cites an unresolved cited work.

Compiling Bioinformatics Recurrences Unresolved cited work

Reference 37

Resolution
verified exact
arxiv_id, observed 2026-07-08T12:54:52.695884Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:f6b60d068f57e58152d8dbbd2edebc276f9216c1e2b35a0689486a27ae4aef2c

Observation e90c1f1f-2852-4788-b025-c31e751ef99d · outbound

This paper cites Bioinformatics , year = 2023, editor =.

Compiling Bioinformatics Recurrences Bioinformatics , year = 2023, editor =

Reference 38

Resolution
verified exact
doi, observed 2026-07-08T12:54:52.748623Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:4edd2d7f3069302d4e5555c395a03831c4d3629544d0b838deaa8864405bdecb

Observation ad2b7749-ae32-4485-a695-c0d6b6ffde08 · outbound

This paper cites Moure, Miquel Moreto, and Antonio Espinosa.

Compiling Bioinformatics Recurrences Moure, Miquel Moreto, and Antonio Espinosa

Reference 39

Resolution
verified exact
doi, observed 2026-07-08T12:54:52.775524Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:3b6cc312a4c5330df1622bb3d51c093c358b1990cc5b28a6d8144ec929432f8e

Observation 550ea06e-3751-40f4-b793-ce09df9f44e9 · outbound

This paper cites McCaskill.

Compiling Bioinformatics Recurrences McCaskill

Reference 40

Resolution
verified exact
doi, observed 2026-07-08T12:54:52.747610Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:77be5367f259c065ec17db8e9cbf34221569b4f1c062c06be60020b7c8bda83a

Observation b549f8c4-026a-4220-be6a-80783aea6319 · outbound

This paper cites Genome Research 20(9), 1297–1303 (2010).

Compiling Bioinformatics Recurrences Genome Research 20(9), 1297–1303 (2010)

Reference 41

Resolution
verified exact
doi, observed 2026-07-08T12:54:52.729322Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:f64ade0f58d6500911e255c574b20f23c9925954b409fa380add4d750698ee97

Observation b35a02fc-199f-47fb-8c6a-8b1c081781fe · outbound

This paper cites an unresolved cited work.

Compiling Bioinformatics Recurrences Unresolved cited work

Reference 42

Resolution
unresolved
raw_fallback, observed 2026-07-08T12:54:53.059573Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:f6b6a568fd3535a1ebd6c4162c589ea63f2cbe1b5ad887268df829662308a7da

Observation f97d8932-8e0f-4e0f-8c22-246e20f92c43 · outbound

This paper cites Journal of the ACM , year = 1999, volume = 46, number = 3, month =.

Compiling Bioinformatics Recurrences Journal of the ACM , year = 1999, volume = 46, number = 3, month =

Reference 43

Resolution
verified exact
arxiv_id, observed 2026-07-08T12:54:52.710546Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:4b38c294acda3c2def31f8505640cff5aaefe571e895ec2530a66bafac4c761b

Observation 328fd079-e84c-4435-b75f-9debaf9f799b · outbound

This paper cites an unresolved cited work.

Compiling Bioinformatics Recurrences Unresolved cited work

Reference 44

Resolution
unresolved
raw_fallback, observed 2026-07-08T12:54:53.053556Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:2db85b4593d9603e298dcef9532aa54d5ff3017e64a3fec6f36a0a3e0dd26e10

Observation 78ab7ce8-8544-4995-baac-e9e9d25cd60d · outbound

This paper cites Needleman and Christian D.

Compiling Bioinformatics Recurrences Needleman and Christian D

Reference 45

Resolution
verified exact
doi, observed 2026-07-08T12:54:52.723594Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:779bf6b961c237eab22f1db41d9cced4c3a6887aec59af25db05de668799b697

Observation 89137bfe-091a-46df-ab71-3b500d11873b · outbound

This paper cites and Mikheenko, Alla and Vollger, Mitchell R.

Compiling Bioinformatics Recurrences and Mikheenko, Alla and Vollger, Mitchell R

Reference 46

Resolution
verified exact
doi, observed 2026-07-08T12:54:52.800481Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:77f00130b21bca7462c50cc72f27f253b1ec5b9fc15fd8f2899c8d0348b1c244

Observation 911b90c0-8435-4a4e-966f-23a2c1b547ac · outbound

This paper cites Jacobson.

Compiling Bioinformatics Recurrences Jacobson

Reference 47

Resolution
verified fuzzy
raw_fallback, observed 2026-07-08T12:54:53.068051Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:d1782bdfec07feaeb8c2f0afc2307b20200392f10c4edc8158a82d03286ab282

Observation 34886df7-cfff-4fbb-9039-d7cd1c10547e · outbound

This paper cites Pevzner, Haixu Tang, and Michael S.

Compiling Bioinformatics Recurrences Pevzner, Haixu Tang, and Michael S

Reference 48

Resolution
verified exact
doi, observed 2026-07-08T12:54:52.773891Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:0b9fa400fe09ecea462bacdc9d755b09321425a31761afdc26b74742313ce394

Observation 3966edf2-e539-4e5a-8dce-c7fe510a1cc2 · outbound

This paper cites Perks: a locality-optimized execution model for iterative memory-bound gpu applications.

Compiling Bioinformatics Recurrences Perks: a locality-optimized execution model for iterative memory-bound gpu applications

Reference 49

Resolution
verified exact
arxiv_id, observed 2026-07-08T12:54:52.762871Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:0352b0cf29e7200bf1e4920d822f53cac0dab1da3794255248e7ec1088bb8ff2

Observation d8c2789a-4241-4896-b6d7-c5f9cb047060 · outbound

This paper cites In Proceedings of the 34th ACM SIGPLAN Conference on Programming Language Design and Implementation (Seattle, Washington, USA) (PLDI ’13).

Compiling Bioinformatics Recurrences In Proceedings of the 34th ACM SIGPLAN Conference on Programming Language Design and Implementation (Seattle, Washington, USA) (PLDI ’13)

Reference 50

Resolution
metadata mismatch
arxiv_id, observed 2026-07-08T12:54:52.783610Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:b4df00e9ff591203e4fa3d9dadc1dd82dadf47c98cd4600789e21c2302f7493f

Observation feee8bc2-500e-42a5-b337-677009a4597d · outbound

This paper cites an unresolved cited work.

Compiling Bioinformatics Recurrences Unresolved cited work

Reference 51

Resolution
verified exact
doi, observed 2026-07-08T12:54:52.665233Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:9797e376fc29a37f2ff787519b862752b25f6b37b1d8498e3a314a3cd0437973

Observation bb7f2f19-2674-49b1-9903-c8db8a3b32dd · outbound

This paper cites an unresolved cited work.

Compiling Bioinformatics Recurrences Unresolved cited work

Reference 52

Resolution
verified exact
doi, observed 2026-07-08T12:54:52.755181Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:34cac8217c552f3d210ddd3232eaa93904e2998eca2fda71df1c889fbcca92f1

Observation 9b5b593c-bd31-4c5e-9617-1a3d67c45a52 · outbound

This paper cites an unresolved cited work.

Compiling Bioinformatics Recurrences Unresolved cited work

Reference 53

Resolution
verified exact
doi, observed 2026-07-08T12:54:52.795594Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:c7d1644a65378449af18e12b06fcb46d0ec4d5152afdd8fd93a9b73e5153d84d

Observation c6f93b06-5c20-470d-8b71-9c7a16ccc08c · outbound

This paper cites an unresolved cited work.

Compiling Bioinformatics Recurrences Unresolved cited work

Reference 54

Resolution
malformed identifier
raw_fallback, observed 2026-07-08T12:54:53.051037Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:d3c94dcc8026c8141982c4b38fec6f5d1891351ec8f09340190cb885aa92bc8b

Observation a3b23830-7353-4b1d-b60d-fbcd32002987 · outbound

This paper cites Identification of Common Molecular Subsequences.

Compiling Bioinformatics Recurrences Identification of Common Molecular Subsequences

Reference 55

Resolution
verified exact
doi, observed 2026-07-08T12:54:52.775870Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:dfdd44fdb20c9576f209599bf5073c51ac5386f0f072a02d02ab1f6071ece320

Observation 8d2a434f-0a14-42d8-ad3f-bb411b823283 · outbound

This paper cites doi:10.1093/bioinformatics/btw753 , publisher =.

Compiling Bioinformatics Recurrences doi:10.1093/bioinformatics/btw753 , publisher =

Reference 56

Resolution
verified exact
doi, observed 2026-07-08T12:54:52.648754Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:bab32818dbcb70eebc2647126b815cbefbac56a40fe3acdf12f1a7bba099fca4

Observation fc28fa4f-b3c2-4b2f-98ca-e2a71558f083 · outbound

This paper cites an unresolved cited work.

Compiling Bioinformatics Recurrences Unresolved cited work

Reference 57

Resolution
malformed identifier
doi_truncated, observed 2026-07-08T12:54:52.783018Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:8ec389b92914833cc9b5854b498e3c5dc9bd451a6bc30b856f96aed14d32c23a

Observation 7b42b491-9d00-4df2-ae2a-6f50f2129083 · outbound

This paper cites an unresolved cited work.

Compiling Bioinformatics Recurrences Unresolved cited work

Reference 58

Resolution
verified exact
doi, observed 2026-07-08T12:54:52.780110Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:babaaa82d44bd01e4b6f64e0ef391cdb8cd638e1b0b747525fbd99378b914c94

Observation 26f41ace-7bd4-4a3d-974f-5bd5ecf10072 · outbound

This paper cites Suzuki and M.

Compiling Bioinformatics Recurrences Suzuki and M

Reference 59

Resolution
verified exact
doi, observed 2026-07-08T12:54:52.704977Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:1bdbd2ad7e942c8defa6da0320d71b9dd34cde438b41242a23e35d943404ef8e

Observation 02f0925b-8085-48ff-8bb3-02e7bc571df4 · outbound

This paper cites an unresolved cited work.

Compiling Bioinformatics Recurrences Unresolved cited work

Reference 60

Resolution
unresolved
raw_fallback, observed 2026-07-08T12:54:53.061497Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:eecf9aedc9f1f168b596f0a72d15e78206af41d100ac7e92a5df115e02005964

Observation 97981463-0604-4fdc-b8a6-56f33de8f1ea · outbound

This paper cites Tarozzi et al.

Compiling Bioinformatics Recurrences Tarozzi et al

Reference 61

Resolution
verified exact
doi, observed 2026-07-08T12:54:52.792599Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:4e59d04b3582a48376683b93445ff7766b0c3c890b9cc786003a49fc04a4b0e6

Observation 18305adb-36da-4f58-9e0f-abb5ea53c94e · outbound

This paper cites In: 2019 IEEE International Conference on Software Maintenance and Evolution (ICSME).

Compiling Bioinformatics Recurrences In: 2019 IEEE International Conference on Software Maintenance and Evolution (ICSME)

Reference 62

Resolution
metadata mismatch
arxiv_id, observed 2026-07-08T12:54:52.746367Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:d2e49e683eee6f52ccb090381c2352141aa1220225a2403bc81b641473bbf9dc

Observation f06b25c7-9fb7-4c55-83c5-6cbce0fc0c1b · outbound

This paper cites Information and Control , year = 1985, volume = 64, number =.

Compiling Bioinformatics Recurrences Information and Control , year = 1985, volume = 64, number =

Reference 63

Resolution
verified exact
doi, observed 2026-07-08T12:54:52.742684Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:100dcf7052d7f7138949d56d4075aba0e4ec4a2c5c61a2d74fa62f4af5d6fc8c

Observation a695b43a-7ecb-4d57-aa11-3f183285e3cd · outbound

This paper cites an unresolved cited work.

Compiling Bioinformatics Recurrences Unresolved cited work

Reference 64

Resolution
unresolved
raw_fallback, observed 2026-07-08T12:54:53.066177Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:82f49b44caa0dae62782abdff18277cb4dcbef6a3032e5171b8aa8be05487081

Observation 71a46551-3f00-4737-9e17-662bdc2329d4 · outbound

This paper cites an unresolved cited work.

Compiling Bioinformatics Recurrences Unresolved cited work

Reference 65

Resolution
unresolved
raw_fallback, observed 2026-07-08T12:54:53.063629Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:4b34fa2f65e818bcf267eebaff835a2cf4a18c27f19ee0b1096a8a9cb346f771

Observation 367f6006-3087-4f94-8152-0d127cf8a720 · outbound

This paper cites an unresolved cited work.

Compiling Bioinformatics Recurrences Unresolved cited work

Reference 66

Resolution
verified exact
arxiv_id, observed 2026-07-08T12:54:52.729341Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:c1b5a65ab03ddc5e3425717303710e3d1eca50eb13d2a973213b376bf783a86f

Observation 8b5c4481-118e-4643-81ee-5696c75258a8 · outbound

This paper cites Auto-tuning parameter choices in hpc applications using bayesian optimization.

Compiling Bioinformatics Recurrences Auto-tuning parameter choices in hpc applications using bayesian optimization

Reference 67

Resolution
metadata mismatch
arxiv_id, observed 2026-07-08T12:54:52.789421Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:5ecbaa0d7ed8200df53ffdd7b01be98e48340d07dc363e4acc17ad90b2c4a734

Observation 09a83374-5185-47d6-884b-00b75eaa52f8 · outbound

This paper cites an unresolved cited work.

Compiling Bioinformatics Recurrences Unresolved cited work

Reference 68

Resolution
unresolved
raw_fallback, observed 2026-07-08T12:54:53.057676Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:7eafb43dad84e33de03180c1d336088e0c51d04a940540242dc5d1035ed2c2b3

Observation cda99469-dc34-47ca-ba7f-954ff03128b2 · outbound

This paper cites Hendrix, David H.

Compiling Bioinformatics Recurrences Hendrix, David H

Reference 69

Resolution
verified exact
doi, observed 2026-07-08T12:54:52.771677Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:47aa6d0a084b9df2ace98a3cea70c5232fcafbfc307782bcafdfaf45ed69d0e3

Observation 44c8203b-fddb-4601-93b2-f61ac855e85c · outbound

This paper cites Mathews, and Liang Huang.

Compiling Bioinformatics Recurrences Mathews, and Liang Huang

Reference 70

Resolution
verified exact
doi, observed 2026-07-08T12:54:52.781227Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:13feb287a35f92e80a720335ed93cbe95bf259bd4d9d14e5b08ce38ae2555947

Observation 6d42172f-d113-4c46-9ea1-9ed36ed853d7 · outbound

This paper cites an unresolved cited work.

Compiling Bioinformatics Recurrences Unresolved cited work

Reference 71

Resolution
verified exact
doi, observed 2026-07-08T12:54:52.784817Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:5ec409d853fcf2bce3a5a3a2a0f84ee2a81939aed5f9194520104888e7e1c182

Observation a150eab7-f3ba-43e1-85e9-b4901d6578c0 · outbound

This paper cites Zuker,Mfold web server for nucleic acid folding and hybridization prediction, Nucleic Acids Res.31(13), 3406–3415 (2003).

Compiling Bioinformatics Recurrences Zuker,Mfold web server for nucleic acid folding and hybridization prediction, Nucleic Acids Res.31(13), 3406–3415 (2003)

Reference 72

Resolution
verified exact
doi, observed 2026-07-08T12:54:52.788839Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:23b02d81cdd246e915587077ebdc2436c84eb04f610097c6eca784c8125b29cf

Observation 0500cf31-6ced-41d6-8d71-92508752cc4d · outbound

This paper cites Zuker and P.

Compiling Bioinformatics Recurrences Zuker and P

Reference 73

Resolution
verified exact
doi, observed 2026-07-08T12:54:52.757553Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-07-08T12:54:46.858999Z digest=sha256:25f5759206a99037006c832b5a5b99e70f0e708c2eb16a44a87f581d945356f6

Pith citing papers

No inbound Pith citation observations are available.