Pith. sign in

Paper Citation Record · LEDGER

Tunable mesoscopic numerical model for bacterial biofilms

As of 8 August 2026, this Paper Citation Record lists 26 of 26 outbound references and 0 inbound Pith citation observations for arXiv:2607.23677.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2607.23677 v1

Coverage vector

measured 26 of 26 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-07-30T16:13:44.374513Z

measured 26 of 26 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-08T06:32:00.761636+00:00

measured 0 of 0 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: cited_works

Reference resolution

26 of 26 outbound references displayed

  • verified exact0
  • verified fuzzy0
  • unresolved26
  • parse uncertain0
  • malformed identifier0
  • metadata mismatch0

External citation measurements

No source-named external measurement is stored.

Outbound references

Observation 56645e56-1c32-4ffa-836c-07d52ee16399 · outbound

This paper cites Mechan- ical interactions between bacteria and hydrogels.Scientific reports, 8(1):10893, 2018.

Tunable mesoscopic numerical model for bacterial biofilms Mechan- ical interactions between bacteria and hydrogels.Scientific reports, 8(1):10893, 2018

Reference 1

Resolution
unresolved
no resolver link, observed 2026-07-30T16:13:42.326447Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-07-30T16:13:42.326447Z digest=sha256:c16ae60b51956086e397ef6a146f0b09c5379763dbe80914f99b24274c453321

Observation dc02020e-22ae-4f8a-aa2a-5e7450d98580 · outbound

This paper cites Picioreanu, M.

Tunable mesoscopic numerical model for bacterial biofilms Picioreanu, M

Reference 2

Resolution
unresolved
no resolver link, observed 2026-07-30T16:13:42.372275Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-07-30T16:13:42.372275Z digest=sha256:fa62754ac9e0c9425bd861434c6e4f7a54dac08371c02cc98ac93e976dc821ec

Observation 41f96afd-04b1-4ee3-be86-58d3a54a98ae · outbound

This paper cites Pseudomonas biofilm matrix composition and niche biology.FEMS microbiology reviews, 36(4):893–916, 2012.

Tunable mesoscopic numerical model for bacterial biofilms Pseudomonas biofilm matrix composition and niche biology.FEMS microbiology reviews, 36(4):893–916, 2012

Reference 3

Resolution
unresolved
no resolver link, observed 2026-07-30T16:13:42.454702Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-07-30T16:13:42.454702Z digest=sha256:6fbafc158878f9aed86b41f9bbef88873f8bfad0e6ec86b2cf9792e028d54492

Observation 5504e644-7034-4588-86dd-a23c83534565 · outbound

This paper cites an unresolved cited work.

Tunable mesoscopic numerical model for bacterial biofilms Unresolved cited work

Reference 4

Resolution
unresolved
no resolver link, observed 2026-07-30T16:13:42.532271Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-07-30T16:13:42.532271Z digest=sha256:f50afffcca8cbdc37498f2669b19fe095366117be052c84baa4a33e591dac215

Observation 14718a26-f9f0-470d-a3b4-47afe4109f57 · outbound

This paper cites Clinically addressing biofilm in chronic wounds.Advances in wound care, 1(3):127–132, 2012.

Tunable mesoscopic numerical model for bacterial biofilms Clinically addressing biofilm in chronic wounds.Advances in wound care, 1(3):127–132, 2012

Reference 5

Resolution
unresolved
no resolver link, observed 2026-07-30T16:13:42.612341Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-07-30T16:13:42.612341Z digest=sha256:0ad27c2e75ee5d439f85cb4f7eadb2f0a3789f1b70a7fa5b9493397d33e40758

Observation f2e3a63a-05b3-4fc5-aa3e-7bc4f0f94363 · outbound

This paper cites The consequences of biofilm dispersal on the host.Scientific reports, 8(1):10738, 2018.

Tunable mesoscopic numerical model for bacterial biofilms The consequences of biofilm dispersal on the host.Scientific reports, 8(1):10738, 2018

Reference 6

Resolution
unresolved
no resolver link, observed 2026-07-30T16:13:42.679974Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-07-30T16:13:42.679974Z digest=sha256:1994a3a33fbfcf87820587d8774826407e6635d599fc980ec1c0ceeda4c12464

Observation 0a46fa00-0c5d-44f8-a04d-bd8e71ff8eac · outbound

This paper cites In situ rheology of staphy- lococcus epidermidis bacterial biofilms.Soft matter, 9(1):122–131, 2013.

Tunable mesoscopic numerical model for bacterial biofilms In situ rheology of staphy- lococcus epidermidis bacterial biofilms.Soft matter, 9(1):122–131, 2013

Reference 7

Resolution
unresolved
no resolver link, observed 2026-07-30T16:13:42.776599Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-07-30T16:13:42.776599Z digest=sha256:3494578b501a55cae5ea8052765c53648c0a3b53e5f1e295b160148ccfe6146d

Observation 71a42c72-c7ba-4ed5-9299-279995ee594b · outbound

This paper cites Modeling of mesoscale variability in biofilm shear behavior.PLoS One, 11(11):e0165593, 2016.

Tunable mesoscopic numerical model for bacterial biofilms Modeling of mesoscale variability in biofilm shear behavior.PLoS One, 11(11):e0165593, 2016

Reference 8

Resolution
unresolved
no resolver link, observed 2026-07-30T16:13:42.877059Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-07-30T16:13:42.877059Z digest=sha256:5b446f8c25229e6f4964116206fd54492780476fb64c6d868212b16b5497320d

Observation b6896def-aa1e-4589-b762-48caafa86392 · outbound

This paper cites Self-adaptation of pseudomonas fluorescens biofilms to hydrodynamic stress.Frontiers in microbiology, 11:588884, 2021.

Tunable mesoscopic numerical model for bacterial biofilms Self-adaptation of pseudomonas fluorescens biofilms to hydrodynamic stress.Frontiers in microbiology, 11:588884, 2021

Reference 9

Resolution
unresolved
no resolver link, observed 2026-07-30T16:13:42.978505Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-07-30T16:13:42.978505Z digest=sha256:6d76bfb11dd2e74348ede4e7047f0e32df826a7172fd1a572412b6f2ed5617a3

Observation 399adbd3-6fe0-463a-8455-77a8b8233df5 · outbound

This paper cites Towards standardized mechanical characterization of microbial biofilms: analysis and critical review.npj Biofilms and Microbiomes, 4(1):17, 2018.

Tunable mesoscopic numerical model for bacterial biofilms Towards standardized mechanical characterization of microbial biofilms: analysis and critical review.npj Biofilms and Microbiomes, 4(1):17, 2018

Reference 10

Resolution
unresolved
no resolver link, observed 2026-07-30T16:13:43.082009Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-07-30T16:13:43.082009Z digest=sha256:0647b38e7c561a22c8e6ccdbe13fc2511b0340fd801a04d43d5b03b6bb5eb152

Observation ef9cf3d4-905f-43a7-9c70-3715d60df51e · outbound

This paper cites Biofilms and mechanics: a review of experimental techniques and findings.Journal of Physics D: Applied Physics, 50(22):223002, 2017.

Tunable mesoscopic numerical model for bacterial biofilms Biofilms and mechanics: a review of experimental techniques and findings.Journal of Physics D: Applied Physics, 50(22):223002, 2017

Reference 11

Resolution
unresolved
no resolver link, observed 2026-07-30T16:13:43.149894Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-07-30T16:13:43.149894Z digest=sha256:788ffbab1218cae990d15970cae571485ffc50b99a0753dbd105898b3c3e90c4

Observation e0ff2f5a-9212-45ae-9e05-ec630af92577 · outbound

This paper cites Spatial orga- nization of different sigma factor activities and c-di-gmp signalling within the three- dimensional landscape of a bacterial biofilm.Open biology, 8(8):180066, 2018.

Tunable mesoscopic numerical model for bacterial biofilms Spatial orga- nization of different sigma factor activities and c-di-gmp signalling within the three- dimensional landscape of a bacterial biofilm.Open biology, 8(8):180066, 2018

Reference 12

Resolution
unresolved
no resolver link, observed 2026-07-30T16:13:43.217446Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-07-30T16:13:43.217446Z digest=sha256:d4c074934d03797740e203d6ca2c8556accf4eea84d62c13efdef1ed85b6c75f

Observation f4e74fcf-6ce2-4a2e-9e29-7f00f3950843 · outbound

This paper cites Artifi- cial biofilms establish the role of matrix interactions in staphylococcal biofilm assembly and disassembly.Scientific reports, 5(1):13081, 2015.

Tunable mesoscopic numerical model for bacterial biofilms Artifi- cial biofilms establish the role of matrix interactions in staphylococcal biofilm assembly and disassembly.Scientific reports, 5(1):13081, 2015

Reference 13

Resolution
unresolved
no resolver link, observed 2026-07-30T16:13:43.345006Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-07-30T16:13:43.345006Z digest=sha256:652265287ce37cf81b3dedb8550d5175ee7b8ba34b767613ccf0b647ecabffd0

Observation ceeec2cf-7ea9-4cd9-b9af-b8b9502eaeed · outbound

This paper cites Rigidity and mechanical response in biological structures.

Tunable mesoscopic numerical model for bacterial biofilms Rigidity and mechanical response in biological structures

Reference 14

Resolution
unresolved
no resolver link, observed 2026-07-30T16:13:43.408749Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-07-30T16:13:43.408749Z digest=sha256:0417d47b51b6912972e8a211d5c834d5edd910d29a977d6ecc38d6c12fc60e21

Observation 36d5d6ff-b41c-4349-b03f-97d2b0a1dfa4 · outbound

This paper cites The mechanical world of bacteria.Cell, 161(5):988–997, 2015.

Tunable mesoscopic numerical model for bacterial biofilms The mechanical world of bacteria.Cell, 161(5):988–997, 2015

Reference 15

Resolution
unresolved
no resolver link, observed 2026-07-30T16:13:43.468332Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-07-30T16:13:43.468332Z digest=sha256:726ecb2faa61abe3d5ea09f689222c90779362c4b05780226346e7048b1c1b2d

Observation 5043f14a-a5e1-43aa-ac76-c0f894257569 · outbound

This paper cites As above, so below, and also in between: mesoscale active matter in fluids.Soft matter, 15(44):8946–8950, 2019.

Tunable mesoscopic numerical model for bacterial biofilms As above, so below, and also in between: mesoscale active matter in fluids.Soft matter, 15(44):8946–8950, 2019

Reference 16

Resolution
unresolved
no resolver link, observed 2026-07-30T16:13:43.536550Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-07-30T16:13:43.536550Z digest=sha256:262eb2f5ac12f5956aefcc21fbda91c62c2e7758feb14af0e49c4e17938cb3aa

Observation 01f61605-d596-4748-a513-1fc29c8b8fee · outbound

This paper cites an unresolved cited work.

Tunable mesoscopic numerical model for bacterial biofilms Unresolved cited work

Reference 17

Resolution
unresolved
no resolver link, observed 2026-07-30T16:13:43.585448Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-07-30T16:13:43.585448Z digest=sha256:838b2c5237304b5f440de1f7b2196c363cbd3c3acc6d73eb4d0fee45bfc36a81

Observation 99ec3728-d4a4-47b8-b49b-00f9acbd536e · outbound

This paper cites Espanol and P.

Tunable mesoscopic numerical model for bacterial biofilms Espanol and P

Reference 18

Resolution
unresolved
no resolver link, observed 2026-07-30T16:13:43.637743Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-07-30T16:13:43.637743Z digest=sha256:31825d78d96dcb9247c13a696ad1604c9cdba35f9342ea767a0422756aa1fe49

Observation 90490fe8-d6ed-4692-a568-4ad1c01dc2db · outbound

This paper cites Rhe- ology of pseudomonas fluorescens biofilms: From experiments to predictive dpd meso- scopic modeling.The Journal of Chemical Physics, 158(7), 2023.

Tunable mesoscopic numerical model for bacterial biofilms Rhe- ology of pseudomonas fluorescens biofilms: From experiments to predictive dpd meso- scopic modeling.The Journal of Chemical Physics, 158(7), 2023

Reference 19

Resolution
unresolved
no resolver link, observed 2026-07-30T16:13:43.694769Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-07-30T16:13:43.694769Z digest=sha256:00afd5d5820a6d0b2022d026c74f147c46a5b76d5c2cca9994e13951db416b4e

Observation 6c653e5f-4436-447e-8912-f6742a0d028a · outbound

This paper cites an unresolved cited work.

Tunable mesoscopic numerical model for bacterial biofilms Unresolved cited work

Reference 20

Resolution
unresolved
no resolver link, observed 2026-07-30T16:13:43.798649Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-07-30T16:13:43.798649Z digest=sha256:210dc2008036b70c7514f9b5a653bd96e037309fc21dc8eb59e383be7368ec1a

Observation 561c638b-a578-4b5c-859d-318754944a96 · outbound

This paper cites an unresolved cited work.

Tunable mesoscopic numerical model for bacterial biofilms Unresolved cited work

Reference 21

Resolution
unresolved
no resolver link, observed 2026-07-30T16:13:43.902119Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-07-30T16:13:43.902119Z digest=sha256:69cc79a59108b96b33c4f574ea1cd911ab0b0fcddd870f27a8753a29ac7b37be

Observation f11c58ed-e353-4ca6-945b-aa65b54d2014 · outbound

This paper cites Modeling biofilm formation on dynamically reconfigurable composite surfaces.Langmuir, 34(4):1807–1816, 2018.

Tunable mesoscopic numerical model for bacterial biofilms Modeling biofilm formation on dynamically reconfigurable composite surfaces.Langmuir, 34(4):1807–1816, 2018

Reference 22

Resolution
unresolved
no resolver link, observed 2026-07-30T16:13:44.002842Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-07-30T16:13:44.002842Z digest=sha256:08233564c19e0eaf529b55d167e28218b48229258e3b31dfa79ff10faff3f164

Observation ebafa36b-69d0-48ab-8f26-4dab3c1e6d60 · outbound

This paper cites an unresolved cited work.

Tunable mesoscopic numerical model for bacterial biofilms Unresolved cited work

Reference 23

Resolution
unresolved
no resolver link, observed 2026-07-30T16:13:44.071867Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-07-30T16:13:44.071867Z digest=sha256:093a5d06437aa77619cc632205d7be798cc6d2203d8b3340bb8f7da7072e73d2

Observation 090f5de2-58fd-4d4b-89a1-dd5dc83f5e86 · outbound

This paper cites Fast parallel algorithms for short-range molecular dynamics.J.

Tunable mesoscopic numerical model for bacterial biofilms Fast parallel algorithms for short-range molecular dynamics.J

Reference 24

Resolution
unresolved
no resolver link, observed 2026-07-30T16:13:44.190143Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-07-30T16:13:44.190143Z digest=sha256:de666cff5317df43db6e649fbc82f29dad1c86962d03d9b1a0879a1b118dc036

Observation 621de000-4da5-4a4b-b055-b21ff670e767 · outbound

This paper cites A general method for numerically simulating the stochastic time evolution of coupled chemical reactions.Journal of computational physics, 22(4):403– 434, 1976.

Tunable mesoscopic numerical model for bacterial biofilms A general method for numerically simulating the stochastic time evolution of coupled chemical reactions.Journal of computational physics, 22(4):403– 434, 1976

Reference 25

Resolution
unresolved
no resolver link, observed 2026-07-30T16:13:44.277344Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-07-30T16:13:44.277344Z digest=sha256:8fbd6702cbb3cd6b928c291d2a8c0ba1c7109a44ac96b0f079354001a4f7db7b

Observation 4227a78a-a238-4d28-a9ae-87c74ae3dc17 · outbound

This paper cites Exact stochastic simulation of coupled chemical reactions.The journal of physical chemistry, 81(25):2340–2361, 1977.

Tunable mesoscopic numerical model for bacterial biofilms Exact stochastic simulation of coupled chemical reactions.The journal of physical chemistry, 81(25):2340–2361, 1977

Reference 26

Resolution
unresolved
no resolver link, observed 2026-07-30T16:13:44.374513Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-07-30T16:13:44.374513Z digest=sha256:e042f6e00bd8cd1cb38642546a798b619a591ab62b54606c64cb4d4e78887fc0

Pith citing papers

No inbound Pith citation observations are available.