Paper Citation Record · LEDGER

LLMBDC: Language Model for Biological Domains Oriented Clustering of Gene Ontology

As of 8 August 2026, this Paper Citation Record lists 35 of 35 outbound references and 0 inbound Pith citation observations for arXiv:2608.00099.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2608.00099 v1

Coverage vector

measured 35 of 35 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-04T01:24:26.694321Z

measured 35 of 35 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-08T06:32:00.761636+00:00

measured 0 of 0 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: cited_works

Reference resolution

35 of 35 outbound references displayed

verified exact5
verified fuzzy0
unresolved28
parse uncertain0
malformed identifier2
metadata mismatch0

External citation measurements

No source-named external measurement is stored.

Outbound references

Observation bc252001-9f6a-4dd6-a030-75d83f59831f · outbound

This paper cites GPT-4 Technical Report.

LLMBDC: Language Model for Biological Domains Oriented Clustering of Gene Ontology GPT-4 Technical Report

Reference 1

Resolution: unresolved; no resolver link, observed 2026-08-04T01:24:22.723688Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation a279fd2a-8f0b-41f9-9bfb-276c9c898a81 · outbound

This paper cites an unresolved cited work.

LLMBDC: Language Model for Biological Domains Oriented Clustering of Gene Ontology Unresolved cited work

Reference 2

Resolution: unresolved; no resolver link, observed 2026-08-04T01:24:22.790314Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 6caba8cc-ae68-4fb6-bba0-64f4c7e07741 · outbound

This paper cites Cary, Jesse C.

LLMBDC: Language Model for Biological Domains Oriented Clustering of Gene Ontology Cary, Jesse C

Reference 3

Resolution: unresolved; no resolver link, observed 2026-08-04T01:24:22.917571Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 6aaa3425-edbf-43bd-810c-7f7d47068e6e · outbound

This paper cites Chen, Christopher M.

LLMBDC: Language Model for Biological Domains Oriented Clustering of Gene Ontology Chen, Christopher M

Reference 4

Resolution: unresolved; no resolver link, observed 2026-08-04T01:24:23.012046Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 713e744b-062d-49c1-8e07-71303a83c3b3 · outbound

This paper cites an unresolved cited work.

LLMBDC: Language Model for Biological Domains Oriented Clustering of Gene Ontology Unresolved cited work

Reference 5

Resolution: unresolved; no resolver link, observed 2026-08-04T01:24:23.114752Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation e247e0d5-0f3f-459e-b658-22cb4df52fc9 · outbound

This paper cites Qin, Joyce Ho, Tianfan Fu, Jing Ma, Mengdi Huai, Fei Wang, and Carl Yang.

LLMBDC: Language Model for Biological Domains Oriented Clustering of Gene Ontology Qin, Joyce Ho, Tianfan Fu, Jing Ma, Mengdi Huai, Fei Wang, and Carl Yang

Reference 6

Resolution: unresolved; no resolver link, observed 2026-08-04T01:24:23.230961Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 372a7ff3-71f7-46bf-8798-594fbac8d51d · outbound

This paper cites an unresolved cited work.

LLMBDC: Language Model for Biological Domains Oriented Clustering of Gene Ontology Unresolved cited work

Reference 7

Resolution: verified exact; doi, observed 2026-08-04T01:28:41.116201Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T07:08:16.162988+00:00.

Observation 5600b28d-04bd-4aed-aefa-043cc5d36e51 · outbound

This paper cites DeepSeek-R1: Incentivizing Reasoning Capability in LLMs via Reinforcement Learning.

LLMBDC: Language Model for Biological Domains Oriented Clustering of Gene Ontology DeepSeek-R1: Incentivizing Reasoning Capability in LLMs via Reinforcement Learning

Reference 8

Resolution: unresolved; no resolver link, observed 2026-08-04T01:24:23.505925Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation f1eacf6e-2e3b-43eb-b273-c562c5585395 · outbound

This paper cites an unresolved cited work.

LLMBDC: Language Model for Biological Domains Oriented Clustering of Gene Ontology Unresolved cited work

Reference 9

Resolution: unresolved; no resolver link, observed 2026-08-04T01:24:23.742343Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation a74b9cda-7c3d-4e5b-a3c5-0a5a86d8dc9c · outbound

This paper cites Pillich, Dylan Fong, Kevin Smith, Robin Bachelder, Trey Ideker, and Dexter Pratt.

LLMBDC: Language Model for Biological Domains Oriented Clustering of Gene Ontology Pillich, Dylan Fong, Kevin Smith, Robin Bachelder, Trey Ideker, and Dexter Pratt

Reference 10

Resolution: verified exact; doi, observed 2026-08-04T01:28:40.750597Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T07:08:16.216978+00:00.

Observation 93598deb-24f0-4194-b583-e8b04d095294 · outbound

This paper cites an unresolved cited work.

LLMBDC: Language Model for Biological Domains Oriented Clustering of Gene Ontology Unresolved cited work

Reference 11

Resolution: unresolved; no resolver link, observed 2026-08-04T01:24:24.284753Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation bae9dc9a-3693-4580-9783-2c2832c9a101 · outbound

This paper cites an unresolved cited work.

LLMBDC: Language Model for Biological Domains Oriented Clustering of Gene Ontology Unresolved cited work

Reference 12

Resolution: unresolved; no resolver link, observed 2026-08-04T01:24:24.417864Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation d8d23a8b-e161-4324-9e61-396474ae76a7 · outbound

This paper cites an unresolved cited work.

LLMBDC: Language Model for Biological Domains Oriented Clustering of Gene Ontology Unresolved cited work

Reference 13

Resolution: unresolved; no resolver link, observed 2026-08-04T01:24:24.662495Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 43103173-c37a-4b31-8a69-9f97e006864b · outbound

This paper cites an unresolved cited work.

LLMBDC: Language Model for Biological Domains Oriented Clustering of Gene Ontology Unresolved cited work

Reference 14

Resolution: unresolved; no resolver link, observed 2026-08-04T01:24:24.733246Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 54f4b872-aa4d-4fa6-9353-31dd82be8b9c · outbound

This paper cites an unresolved cited work.

LLMBDC: Language Model for Biological Domains Oriented Clustering of Gene Ontology Unresolved cited work

Reference 15

Resolution: unresolved; no resolver link, observed 2026-08-04T01:24:24.834750Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 9dcbb9e6-675e-464d-93c7-39e6abf3a0e3 · outbound

This paper cites UniEntrezDB: Large-scale Gene Ontology Annotation Dataset and Evaluation Benchmarks with Unified Entrez Gene Identifiers.

LLMBDC: Language Model for Biological Domains Oriented Clustering of Gene Ontology UniEntrezDB: Large-scale Gene Ontology Annotation Dataset and Evaluation Benchmarks with Unified Entrez Gene Identifiers

Reference 16

Resolution: unresolved; no resolver link, observed 2026-08-04T01:24:24.954743Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation a41168fd-809d-47cb-aff3-2594c638918b · outbound

This paper cites GoBERT: Gene Ontology Graph Informed BERT for Universal Gene Function Prediction.

LLMBDC: Language Model for Biological Domains Oriented Clustering of Gene Ontology GoBERT: Gene Ontology Graph Informed BERT for Universal Gene Function Prediction

Reference 17

Resolution: unresolved; no resolver link, observed 2026-08-04T01:24:25.035605Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 941ab432-7de1-4219-abf9-0144889ba97a · outbound

This paper cites an unresolved cited work.

LLMBDC: Language Model for Biological Domains Oriented Clustering of Gene Ontology Unresolved cited work

Reference 18

Resolution: unresolved; no resolver link, observed 2026-08-04T01:24:25.088168Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation b9501839-d847-47d1-ad04-cf91b20fb345 · outbound

This paper cites an unresolved cited work.

LLMBDC: Language Model for Biological Domains Oriented Clustering of Gene Ontology Unresolved cited work

Reference 19

Resolution: unresolved; no resolver link, observed 2026-08-04T01:24:25.163287Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 6aad84ea-0ad8-4343-b3e7-f7a09cacf67d · outbound

This paper cites an unresolved cited work.

LLMBDC: Language Model for Biological Domains Oriented Clustering of Gene Ontology Unresolved cited work

Reference 20

Resolution: unresolved; no resolver link, observed 2026-08-04T01:24:25.295036Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 57846537-0f93-444f-95c2-5ea974a8740c · outbound

This paper cites an unresolved cited work.

LLMBDC: Language Model for Biological Domains Oriented Clustering of Gene Ontology Unresolved cited work

Reference 21

Resolution: unresolved; no resolver link, observed 2026-08-04T01:24:25.368447Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation ffc79257-c918-4ca3-8785-0f4783e223e3 · outbound

This paper cites Sherman, Ming Hao, Ju Qiu, Xiaoli Jiao, Michael W.

LLMBDC: Language Model for Biological Domains Oriented Clustering of Gene Ontology Sherman, Ming Hao, Ju Qiu, Xiaoli Jiao, Michael W

Reference 22

Resolution: malformed identifier; no resolver link, observed 2026-08-04T01:24:25.579839Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 1401b845-08f9-4de0-a197-6a693d969b58 · outbound

This paper cites an unresolved cited work.

LLMBDC: Language Model for Biological Domains Oriented Clustering of Gene Ontology Unresolved cited work

Reference 23

Resolution: verified exact; doi, observed 2026-08-04T01:28:40.344753Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T07:08:16.286631+00:00.

Observation ef1d5545-f157-4ac9-a2e9-220054a3c0c5 · outbound

This paper cites an unresolved cited work.

LLMBDC: Language Model for Biological Domains Oriented Clustering of Gene Ontology Unresolved cited work

Reference 24

Resolution: unresolved; no resolver link, observed 2026-08-04T01:24:25.830485Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 04381608-c0e2-4e62-b67d-2c897d8c9cad · outbound

This paper cites an unresolved cited work.

LLMBDC: Language Model for Biological Domains Oriented Clustering of Gene Ontology Unresolved cited work

Reference 25

Resolution: unresolved; no resolver link, observed 2026-08-04T01:24:25.951877Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 3b9b6652-8c68-43bd-8f39-2cfabed858da · outbound

This paper cites an unresolved cited work.

LLMBDC: Language Model for Biological Domains Oriented Clustering of Gene Ontology Unresolved cited work

Reference 26

Resolution: verified exact; doi, observed 2026-08-04T01:28:39.877105Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T07:08:16.343007+00:00.

Observation df0a8019-fd7c-4605-9a8e-e978f183682e · outbound

This paper cites an unresolved cited work.

LLMBDC: Language Model for Biological Domains Oriented Clustering of Gene Ontology Unresolved cited work

Reference 27

Resolution: unresolved; no resolver link, observed 2026-08-04T01:24:26.186688Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation d72725c3-7cc4-4873-88f9-e1f86985b4de · outbound

This paper cites an unresolved cited work.

LLMBDC: Language Model for Biological Domains Oriented Clustering of Gene Ontology Unresolved cited work

Reference 28

Resolution: unresolved; no resolver link, observed 2026-08-04T01:24:26.258388Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 569af263-a587-4073-ade1-910a443ecbbe · outbound

This paper cites an unresolved cited work.

LLMBDC: Language Model for Biological Domains Oriented Clustering of Gene Ontology Unresolved cited work

Reference 29

Resolution: unresolved; no resolver link, observed 2026-08-04T01:24:26.326043Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation ebdae274-3d7c-4176-b70a-40c4fc4f4e75 · outbound

This paper cites Qwen3 Technical Report.

LLMBDC: Language Model for Biological Domains Oriented Clustering of Gene Ontology Qwen3 Technical Report

Reference 30

Resolution: unresolved; no resolver link, observed 2026-08-04T01:24:26.431862Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 50ad6215-b9e9-4d2e-8dc2-9e922e1ea658 · outbound

This paper cites an unresolved cited work.

LLMBDC: Language Model for Biological Domains Oriented Clustering of Gene Ontology Unresolved cited work

Reference 31

Resolution: unresolved; no resolver link, observed 2026-08-04T01:24:26.513012Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 8489e4a0-d008-4fdc-a5fb-d15a3b4a8744 · outbound

This paper cites an unresolved cited work.

LLMBDC: Language Model for Biological Domains Oriented Clustering of Gene Ontology Unresolved cited work

Reference 32

Resolution: verified exact; doi, observed 2026-08-04T01:28:39.544750Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T07:08:16.46045+00:00.

Observation fa8b7d21-ff5a-402c-a9d7-817c4fd68a13 · outbound

This paper cites Bioinformatics 26, 7 (2010), 976–978.

LLMBDC: Language Model for Biological Domains Oriented Clustering of Gene Ontology Bioinformatics 26, 7 (2010), 976–978

Reference 2010

Resolution: malformed identifier; no resolver link, observed 2026-08-04T01:24:26.595250Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation f48a2e16-f3e5-4d2f-999b-c2954419d204 · outbound

This paper cites Self-Alignment Pretraining for Biomedical Entity Representations.

LLMBDC: Language Model for Biological Domains Oriented Clustering of Gene Ontology Self-Alignment Pretraining for Biomedical Entity Representations

Reference 2020

Resolution: unresolved; no resolver link, observed 2026-08-04T01:24:24.534780Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 119c04d2-5e13-430e-b4e9-aeed59604a6c · outbound

This paper cites Applications in Plant Sciences 11, 4 (2023), e11536.

LLMBDC: Language Model for Biological Domains Oriented Clustering of Gene Ontology Applications in Plant Sciences 11, 4 (2023), e11536

Reference 2023

Resolution: unresolved; no resolver link, observed 2026-08-04T01:24:25.500664Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Pith citing papers

No inbound Pith citation observations are available.