Typed states for the displayed outbound observations.
Source: paper_references, paper_reference_links, observed 2026-08-10T16:57:58.841644Z
Paper Citation Record · LEDGER
Simulating is not always understanding: When model complexity obscures biology
As of 22 August 2026, this Paper Citation Record lists 41 of 41 outbound references and 0 inbound Pith citation observations for arXiv:2608.06998.
A citation records a reference. It does not transfer a finding from one paper to another.
Coverage vector
One-hop event checks from named stored sources.
Source: scholarly_work_events, retraction_status_cache, observed 2026-08-21T06:32:19.484+00:00
Pith citing papers itemized under the disclosed page cap.
Source: paper_references, paper_reference_links
A source-named dated measurement, never combined with another source.
Source: cited_works
Reference resolution
41 of 41 outbound references displayed
- verified exact0
- verified fuzzy37
- unresolved4
- parse uncertain0
- malformed identifier0
- metadata mismatch0
External citation measurements
No source-named external measurement is stored.
Outbound references
Observation 46fa5d24-5148-43af-9471-87e601f83bb6 · outbound
This paper cites Dynamic mechanistic explanation: computational modeling of circadian rhythms as an exemplar for cognitive science.Studies in History and Philosophy of Science, 41:321–333, 2010.
Simulating is not always understanding: When model complexity obscures biology Dynamic mechanistic explanation: computational modeling of circadian rhythms as an exemplar for cognitive science.Studies in History and Philosophy of Science, 41:321–333, 2010
Reference 1
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-10T16:57:59.503471Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation 8560b5fa-90a3-4ece-bb8e-701ef9ff07ce · outbound
This paper cites an unresolved cited work.
Simulating is not always understanding: When model complexity obscures biology Unresolved cited work
Reference 2
- Resolution
- unresolved
- raw_fallback, observed 2026-08-10T16:57:59.488540Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation 20e8128a-2def-45f7-98e9-9634d1f86eca · outbound
This paper cites Cambridge University Press, Cambridge, 2nd edition, 2009.
Simulating is not always understanding: When model complexity obscures biology Cambridge University Press, Cambridge, 2nd edition, 2009
Reference 3
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-10T16:57:59.473728Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation cffdfd75-c271-4e01-b6a9-496a8326413d · outbound
This paper cites Three kinds of idealization.Journal of Philosophy, 104:639–659, 2007.
Simulating is not always understanding: When model complexity obscures biology Three kinds of idealization.Journal of Philosophy, 104:639–659, 2007
Reference 4
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-10T16:57:59.457949Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation ef705630-4e27-4c69-84d5-51ed4732b5fe · outbound
This paper cites Modelling and representing: an artefactual approach to model-based representation.
Simulating is not always understanding: When model complexity obscures biology Modelling and representing: an artefactual approach to model-based representation
Reference 5
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-10T16:57:59.442474Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation ba20e472-a110-45ee-9a73-b6fdbf8caf04 · outbound
This paper cites Karr, Jayodita C.
Simulating is not always understanding: When model complexity obscures biology Karr, Jayodita C
Reference 6
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-10T16:57:59.427353Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation 14ff04d9-41c0-4c9c-8e32-bfa6841ccca8 · outbound
This paper cites Thornburg, Ansel Maytin, Jonghan Kwon, Troy A.
Simulating is not always understanding: When model complexity obscures biology Thornburg, Ansel Maytin, Jonghan Kwon, Troy A
Reference 7
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-10T16:57:59.412377Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation 025e50ac-d38a-431b-abf0-3bb7ce71619c · outbound
This paper cites Gutenkunst, Joshua J.
Simulating is not always understanding: When model complexity obscures biology Gutenkunst, Joshua J
Reference 8
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-10T16:57:59.397552Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation 8fe705ac-e012-4a62-bb5f-a6343bec25d3 · outbound
This paper cites an unresolved cited work.
Simulating is not always understanding: When model complexity obscures biology Unresolved cited work
Reference 9
- Resolution
- unresolved
- raw_fallback, observed 2026-08-10T16:57:59.379781Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation 07e9e287-3f67-4c3b-8cbc-685cfaa4af18 · outbound
This paper cites Adynamicalparadigmformolecularcellbiology.TrendsinCellBiology, 30:504–515, 2020.
Simulating is not always understanding: When model complexity obscures biology Adynamicalparadigmformolecularcellbiology.TrendsinCellBiology, 30:504–515, 2020
Reference 10
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-10T16:57:59.363442Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation 59246984-fd78-47d0-b361-7ad160f97b47 · outbound
This paper cites Understanding from machine learning models.British Journal for the Philosophy of Science, 73(1):109–133, 2022.
Simulating is not always understanding: When model complexity obscures biology Understanding from machine learning models.British Journal for the Philosophy of Science, 73(1):109–133, 2022
Reference 11
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-10T16:57:59.348029Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation 0a9acca0-691f-4d2b-b101-d8f78348d36d · outbound
This paper cites Data-driven discovery of dynamical models in biology.Nature Reviews Physics, 2026.
Simulating is not always understanding: When model complexity obscures biology Data-driven discovery of dynamical models in biology.Nature Reviews Physics, 2026
Reference 12
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-10T16:57:59.332257Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation f5759892-4034-450c-8b73-7a03b66e34ba · outbound
This paper cites The strategy of model building in population biology.American Scientist, 54(4): 421–431, 1966.
Simulating is not always understanding: When model complexity obscures biology The strategy of model building in population biology.American Scientist, 54(4): 421–431, 1966
Reference 13
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-10T16:57:59.317078Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation 4dbdf105-ece6-46b4-b684-a24abb0beb57 · outbound
This paper cites Nédélec, Thomas Surrey, Anthony C.
Simulating is not always understanding: When model complexity obscures biology Nédélec, Thomas Surrey, Anthony C
Reference 14
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-10T16:57:59.302050Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation 3572f1b3-e5cf-4839-8516-0a3bc5b9f766 · outbound
This paper cites On the explanatory power of atomistic simulations.European Journal for Philosophy of Science, 15:45, 2025.
Simulating is not always understanding: When model complexity obscures biology On the explanatory power of atomistic simulations.European Journal for Philosophy of Science, 15:45, 2025
Reference 15
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-10T16:57:59.285720Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation 1c345816-895e-4495-a645-6f990e2bb3ee · outbound
This paper cites Howtoinferexplanationsfromcomputersimulations.StudiesinHistoryandPhilosophy of Science Part A, 82:25–33, 2020.
Simulating is not always understanding: When model complexity obscures biology Howtoinferexplanationsfromcomputersimulations.StudiesinHistoryandPhilosophy of Science Part A, 82:25–33, 2020
Reference 16
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-10T16:57:59.271168Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation 8df609e4-12f4-4310-8fde-2fdc1b07eb2d · outbound
This paper cites Vertex models: from cell mechanics to tissue morphogenesis.Philosophical Transactions of the Royal Society B: Biological Sciences, 372(1720): 20150520, 2017.
Simulating is not always understanding: When model complexity obscures biology Vertex models: from cell mechanics to tissue morphogenesis.Philosophical Transactions of the Royal Society B: Biological Sciences, 372(1720): 20150520, 2017
Reference 17
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-10T16:57:59.256160Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation ebd832ff-d0f0-425e-beda-2591aab4eb58 · outbound
This paper cites Cristina Marchetti, Jean-François Joanny, Sriram Ramaswamy, Tanniemola B.
Simulating is not always understanding: When model complexity obscures biology Cristina Marchetti, Jean-François Joanny, Sriram Ramaswamy, Tanniemola B
Reference 18
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-10T16:57:59.240869Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation e50825d5-8b6d-4e8e-a7fa-dcc95e3e9351 · outbound
This paper cites an unresolved cited work.
Simulating is not always understanding: When model complexity obscures biology Unresolved cited work
Reference 19
- Resolution
- unresolved
- raw_fallback, observed 2026-08-10T16:57:59.225768Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation c1e92b00-edd9-4425-ab39-1d0178ace9d4 · outbound
This paper cites Babtie and Michael P.
Simulating is not always understanding: When model complexity obscures biology Babtie and Michael P
Reference 20
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-10T16:57:59.210201Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation 9830c603-db54-4221-8789-d4f1d490dfc6 · outbound
This paper cites an unresolved cited work.
Simulating is not always understanding: When model complexity obscures biology Unresolved cited work
Reference 21
- Resolution
- unresolved
- raw_fallback, observed 2026-08-10T16:57:59.195782Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation 983da84a-ec6b-47e1-8823-231a4aec3d91 · outbound
This paper cites The evolution of systems biology and systems medicine: from mechanistic models to uncertainty quantification.Annual Review of Biomedical Engineering, 27:425–447, 2025.
Simulating is not always understanding: When model complexity obscures biology The evolution of systems biology and systems medicine: from mechanistic models to uncertainty quantification.Annual Review of Biomedical Engineering, 27:425–447, 2025
Reference 22
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-10T16:57:59.181604Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation 156b4391-baae-4af0-a58b-86bfd6580b31 · outbound
This paper cites Banga and Alejandro F.
Simulating is not always understanding: When model complexity obscures biology Banga and Alejandro F
Reference 23
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-10T16:57:59.166863Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation 363649b4-19f7-4f9e-9b2e-ad883b37937c · outbound
This paper cites A modular approach for modeling the cell cycle based on functional response curves.PLoS Computational Biology, 17:e1009008, 2021.
Simulating is not always understanding: When model complexity obscures biology A modular approach for modeling the cell cycle based on functional response curves.PLoS Computational Biology, 17:e1009008, 2021
Reference 24
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-10T16:57:59.152013Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation 5a9ebda1-62a4-432f-9fb1-15b3a5b98eb9 · outbound
This paper cites Bistable,biphasicregulationofPP2A-B55accounts for the dynamics of mitotic substrate phosphorylation.Current Biology, 31(4):794–808.e6, 2021.
Simulating is not always understanding: When model complexity obscures biology Bistable,biphasicregulationofPP2A-B55accounts for the dynamics of mitotic substrate phosphorylation.Current Biology, 31(4):794–808.e6, 2021
Reference 25
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-10T16:57:59.136750Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation b75e0280-acf8-45aa-aac1-bacf87adaccf · outbound
This paper cites Simulation and the sense of understanding.
Simulating is not always understanding: When model complexity obscures biology Simulation and the sense of understanding
Reference 26
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-10T16:57:59.121179Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation b15c7098-424c-4ad7-b560-bd1617bd7701 · outbound
This paper cites No understanding without explanation.Studies in History and Philosophy of Science, 44:510–515, 2013.
Simulating is not always understanding: When model complexity obscures biology No understanding without explanation.Studies in History and Philosophy of Science, 44:510–515, 2013
Reference 27
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-10T16:57:59.105922Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation 0d785b0d-23fa-4750-bc2e-a690d82d4aad · outbound
This paper cites de Regt.Understanding Scientific Understanding.
Simulating is not always understanding: When model complexity obscures biology de Regt.Understanding Scientific Understanding
Reference 28
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-10T16:57:59.087456Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation 62c07d43-ba81-4c0d-ba87-def785e4b793 · outbound
This paper cites Batterman and Collin C.
Simulating is not always understanding: When model complexity obscures biology Batterman and Collin C
Reference 29
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-10T16:57:59.070593Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation c4759552-fead-4890-8d75-a43bc49fcf44 · outbound
This paper cites Complex versus complicated systems biology, universality versus detailed modeling.
Simulating is not always understanding: When model complexity obscures biology Complex versus complicated systems biology, universality versus detailed modeling
Reference 30
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-10T16:57:59.055513Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation f63cb80b-cadc-45f7-b3c6-59c4a49f62fc · outbound
This paper cites Craver and David M.
Simulating is not always understanding: When model complexity obscures biology Craver and David M
Reference 31
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-10T16:57:59.039747Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation 94c9ac0b-0a77-4016-9d9e-863254c5028f · outbound
This paper cites Beyond reduction and pluralism: toward an epistemology of explanatory integration in biology.Erkenntnis, 73:295–311, 2010.
Simulating is not always understanding: When model complexity obscures biology Beyond reduction and pluralism: toward an epistemology of explanatory integration in biology.Erkenntnis, 73:295–311, 2010
Reference 32
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-10T16:57:59.024400Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation 5bc8d2d1-47dc-4498-ba7c-af8134815169 · outbound
This paper cites Theinfluence of cell mechanics, cell–cell interactions, and proliferation on epithelial packing.Current Biology, 17: 2095–2104, 2007.
Simulating is not always understanding: When model complexity obscures biology Theinfluence of cell mechanics, cell–cell interactions, and proliferation on epithelial packing.Current Biology, 17: 2095–2104, 2007
Reference 33
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-10T16:57:59.009140Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation d0ff1c0d-ca1f-471c-91e6-2f354f0c179b · outbound
This paper cites Burkhardt, et al.
Simulating is not always understanding: When model complexity obscures biology Burkhardt, et al
Reference 34
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-10T16:57:58.994359Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation 8e32d83a-6100-4f6d-a0da-c0b561466789 · outbound
This paper cites scgpt: toward building a foundation model for single-cell multi-omics using generative AI.Nature Methods, 21:1470–1480, 2024.
Simulating is not always understanding: When model complexity obscures biology scgpt: toward building a foundation model for single-cell multi-omics using generative AI.Nature Methods, 21:1470–1480, 2024
Reference 35
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-10T16:57:58.980477Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation d992ef03-1685-4a12-b61e-ba64f48463c5 · outbound
This paper cites Brydon, Zexian Zeng, X.
Simulating is not always understanding: When model complexity obscures biology Brydon, Zexian Zeng, X
Reference 36
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-10T16:57:58.964332Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation a19e57c4-6d14-4de8-9874-512373f1bb21 · outbound
This paper cites Towards the construction of a virtual yeast.Nature, 655: 59–70, 2026.
Simulating is not always understanding: When model complexity obscures biology Towards the construction of a virtual yeast.Nature, 655: 59–70, 2026
Reference 37
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-10T16:57:58.947270Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation 06bd4e12-3c16-4ef9-85cd-3848ac2bd51e · outbound
This paper cites Garcia Gomez, Kirsten H.
Simulating is not always understanding: When model complexity obscures biology Garcia Gomez, Kirsten H
Reference 38
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-10T16:57:58.931108Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation 0f7b561c-4751-4600-a1e1-693b7076faa0 · outbound
This paper cites Artificial intelligence-enabled multi-scale virtual cell: perspective, challenges, and opportunities.Briefings in Bioinformatics, 27(bbag104), 2026.
Simulating is not always understanding: When model complexity obscures biology Artificial intelligence-enabled multi-scale virtual cell: perspective, challenges, and opportunities.Briefings in Bioinformatics, 27(bbag104), 2026
Reference 39
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-10T16:57:58.914340Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation dcf7750a-f1ed-4c46-a376-73ecacd286ae · outbound
This paper cites Theis, and Bo Wang.
Simulating is not always understanding: When model complexity obscures biology Theis, and Bo Wang
Reference 40
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-10T16:57:58.898410Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Observation 6367b7b2-7eb0-44e2-ad4f-cd9856a4c6d5 · outbound
This paper cites Gitlab repository.https://gitlab.kuleuven.be/gelenslab/publications/ 2026_Gelens_perspective_simulating_and_understanding.git, 2026.
Simulating is not always understanding: When model complexity obscures biology Gitlab repository.https://gitlab.kuleuven.be/gelenslab/publications/ 2026_Gelens_perspective_simulating_and_understanding.git, 2026
Reference 41
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-10T16:57:58.881999Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.
Pith citing papers
No inbound Pith citation observations are available.