Paper Citation Record · LEDGER

UMA-Inverse: Ligand-Conditioned Protein Inverse Folding with a Distogram-Supervised Dense Pair Encoder

As of 8 August 2026, this Paper Citation Record lists 22 of 22 outbound references and 0 inbound Pith citation observations for arXiv:2607.07866.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2607.07866 v1

Coverage vector

measured 22 of 22 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-07-10T16:25:35.505441Z

measured 22 of 22 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-08T06:32:00.761636+00:00

measured 0 of 0 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: cited_works

Reference resolution

22 of 22 outbound references displayed

verified exact13
verified fuzzy3
unresolved2
parse uncertain0
malformed identifier0
metadata mismatch4

External citation measurements

No source-named external measurement is stored.

Outbound references

Observation 8f7179a4-d26d-4eb5-af07-e2a0c136031e · outbound

This paper cites Dauparas, I.

UMA-Inverse: Ligand-Conditioned Protein Inverse Folding with a Distogram-Supervised Dense Pair Encoder Dauparas, I

Reference 1

Resolution: verified exact; doi, observed 2026-07-10T16:27:21.529956Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 19033419-68fe-46ca-a08e-b74be1ca11e7 · outbound

This paper cites doi: 10.1038/s41592-025-02626-1.

UMA-Inverse: Ligand-Conditioned Protein Inverse Folding with a Distogram-Supervised Dense Pair Encoder doi: 10.1038/s41592-025-02626-1

Reference 2

Resolution: metadata mismatch; doi, observed 2026-07-10T16:27:21.520291Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation b8403506-f861-4b27-a603-ef8a438ce9c4 · outbound

This paper cites All-atom inverse protein folding through discrete flow matching.

UMA-Inverse: Ligand-Conditioned Protein Inverse Folding with a Distogram-Supervised Dense Pair Encoder All-atom inverse protein folding through discrete flow matching

Reference 3

Resolution: verified exact; local_arxiv, observed 2026-07-10T16:27:21.759159Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 7a5ea484-9edf-4b21-b2d2-aba39348ab06 · outbound

This paper cites Jumper , author R.

UMA-Inverse: Ligand-Conditioned Protein Inverse Folding with a Distogram-Supervised Dense Pair Encoder Jumper , author R

Reference 4

Resolution: metadata mismatch; doi, observed 2026-07-10T16:27:21.526960Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 54c8ff01-6ab9-4154-8a37-80682f006e19 · outbound

This paper cites J., Bambrick, J., Bodenstein, S.

UMA-Inverse: Ligand-Conditioned Protein Inverse Folding with a Distogram-Supervised Dense Pair Encoder J., Bambrick, J., Bodenstein, S

Reference 5

Resolution: verified exact; doi, observed 2026-07-10T16:27:21.545409Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation e04be667-a92f-4170-a76a-69ec614fa812 · outbound

This paper cites Diaz, Gianluca Scarpellini, Richard Strong Bowen, Nate Gruver, Adam Klivans, Philipp Krähenbühl, Aleksandra Faust, and Maruan Al- Shedivat.

UMA-Inverse: Ligand-Conditioned Protein Inverse Folding with a Distogram-Supervised Dense Pair Encoder Diaz, Gianluca Scarpellini, Richard Strong Bowen, Nate Gruver, Adam Klivans, Philipp Krähenbühl, Aleksandra Faust, and Maruan Al- Shedivat

Reference 6

Resolution: verified exact; arxiv_id, observed 2026-07-10T16:27:21.753001Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 81799291-0a8a-4b2f-bc98-616ae3203697 · outbound

This paper cites an unresolved cited work.

UMA-Inverse: Ligand-Conditioned Protein Inverse Folding with a Distogram-Supervised Dense Pair Encoder Unresolved cited work

Reference 7

Resolution: unresolved; raw_fallback, observed 2026-07-10T16:27:22.325598Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 7118be07-516a-46bf-97c5-15c4dd27c214 · outbound

This paper cites Learning inverse folding from millions of predicted structures.

UMA-Inverse: Ligand-Conditioned Protein Inverse Folding with a Distogram-Supervised Dense Pair Encoder Learning inverse folding from millions of predicted structures

Reference 8

Resolution: verified fuzzy; raw_fallback, observed 2026-07-10T16:27:22.327376Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation d8bb04bc-8893-43a8-a386-15733fa5281e · outbound

This paper cites an unresolved cited work.

UMA-Inverse: Ligand-Conditioned Protein Inverse Folding with a Distogram-Supervised Dense Pair Encoder Unresolved cited work

Reference 9

Resolution: unresolved; raw_fallback, observed 2026-07-10T16:27:22.329062Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation e409cfd5-6cd2-4b7c-b361-543457dfe378 · outbound

This paper cites Accurate and robust protein sequence design with CarbonDesign.Nature Machine Intelligence, 6:536–547, 2024.

UMA-Inverse: Ligand-Conditioned Protein Inverse Folding with a Distogram-Supervised Dense Pair Encoder Accurate and robust protein sequence design with CarbonDesign.Nature Machine Intelligence, 6:536–547, 2024

Reference 10

Resolution: verified exact; doi, observed 2026-07-10T16:27:21.502783Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation ef292671-d0b3-4575-974b-f186f0d4f510 · outbound

This paper cites Qu, W., Ma, Y ., Ye, F., Lu, C., Zhou, Y ., Zhang, K., Wang, L., Gui, M., and Gu, Q.

UMA-Inverse: Ligand-Conditioned Protein Inverse Folding with a Distogram-Supervised Dense Pair Encoder Qu, W., Ma, Y ., Ye, F., Lu, C., Zhou, Y ., Zhang, K., Wang, L., Gui, M., and Gu, Q

Reference 11

Resolution: metadata mismatch; doi, observed 2026-07-10T16:27:21.536094Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation ee0b46da-41fe-494a-a8ee-1df80429b1e4 · outbound

This paper cites Xie, T., Xue, S., Feng, Z., Hu, T., Sun, J., Li, Z., and Zhang, C.

UMA-Inverse: Ligand-Conditioned Protein Inverse Folding with a Distogram-Supervised Dense Pair Encoder Xie, T., Xue, S., Feng, Z., Hu, T., Sun, J., Li, Z., and Zhang, C

Reference 12

Resolution: metadata mismatch; doi, observed 2026-07-10T16:27:21.533309Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 6280d6ef-f9f4-495d-8e2d-b95b5aea0e90 · outbound

This paper cites I., Li, Y ., Corley, N., Kim, P., Funk, J., Mathis, S., Sa- like, S., Muraishi, A., Eisenach, H., Thompson, T.

UMA-Inverse: Ligand-Conditioned Protein Inverse Folding with a Distogram-Supervised Dense Pair Encoder I., Li, Y ., Corley, N., Kim, P., Funk, J., Mathis, S., Sa- like, S., Muraishi, A., Eisenach, H., Thompson, T

Reference 13

Resolution: verified exact; doi, observed 2026-07-10T16:27:21.538782Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 309023a0-538f-4735-a346-81ba6e790b15 · outbound

This paper cites Shuai, Tianyu Lu, Subhang Bhatti, Petr Kouba, and Po-Ssu Huang.

UMA-Inverse: Ligand-Conditioned Protein Inverse Folding with a Distogram-Supervised Dense Pair Encoder Shuai, Tianyu Lu, Subhang Bhatti, Petr Kouba, and Po-Ssu Huang

Reference 14

Resolution: verified exact; doi, observed 2026-07-10T16:27:21.506359Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 2ec53eb4-7d2a-4148-8d6e-04b263e214e5 · outbound

This paper cites Krapp, Fernando A.

UMA-Inverse: Ligand-Conditioned Protein Inverse Folding with a Distogram-Supervised Dense Pair Encoder Krapp, Fernando A

Reference 15

Resolution: verified fuzzy; raw_fallback, observed 2026-07-10T16:27:22.324005Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 207fe1fb-6e68-4859-b093-0f9874ab035b · outbound

This paper cites an unresolved cited work.

UMA-Inverse: Ligand-Conditioned Protein Inverse Folding with a Distogram-Supervised Dense Pair Encoder Unresolved cited work

Reference 16

Resolution: verified exact; doi, observed 2026-07-10T16:27:21.516499Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 5fb96ac6-eef9-4690-99da-6f4b0728308d · outbound

This paper cites RNA sequence design and protein–DNA specificity prediction with NA-MPNN.bioRxiv, 2025.

UMA-Inverse: Ligand-Conditioned Protein Inverse Folding with a Distogram-Supervised Dense Pair Encoder RNA sequence design and protein–DNA specificity prediction with NA-MPNN.bioRxiv, 2025

Reference 17

Resolution: verified exact; doi, observed 2026-07-10T16:27:21.548212Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 3c0b46e2-38dc-4d84-a3b8-aeb93bc7eb4d · outbound

This paper cites Benchmarking and consensus ranking of inverse folding models for protein–ligand interface design.

UMA-Inverse: Ligand-Conditioned Protein Inverse Folding with a Distogram-Supervised Dense Pair Encoder Benchmarking and consensus ranking of inverse folding models for protein–ligand interface design

Reference 18

Resolution: verified exact; arxiv_id, observed 2026-07-10T16:27:21.511734Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 9d88760d-609f-4368-9422-a52439c37926 · outbound

This paper cites Decoupled weight decay regularization.

UMA-Inverse: Ligand-Conditioned Protein Inverse Folding with a Distogram-Supervised Dense Pair Encoder Decoupled weight decay regularization

Reference 19

Resolution: verified fuzzy; raw_fallback, observed 2026-07-10T16:27:22.330648Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 80c70295-1f3d-4ccb-a7e9-8e9ad3c224f3 · outbound

This paper cites Smith, Stuart Firestein, and John F.

UMA-Inverse: Ligand-Conditioned Protein Inverse Folding with a Distogram-Supervised Dense Pair Encoder Smith, Stuart Firestein, and John F

Reference 20

Resolution: verified exact; doi, observed 2026-07-10T16:27:21.541020Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation bf01186f-60c8-4ea3-beef-298c0f231ba6 · outbound

This paper cites an unresolved cited work.

UMA-Inverse: Ligand-Conditioned Protein Inverse Folding with a Distogram-Supervised Dense Pair Encoder Unresolved cited work

Reference 21

Resolution: verified exact; doi, observed 2026-07-10T16:27:21.543303Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation f92c4a54-0900-4a02-a4b5-f16cd1e45aa6 · outbound

This paper cites Flow Matching for Generative Modeling.

UMA-Inverse: Ligand-Conditioned Protein Inverse Folding with a Distogram-Supervised Dense Pair Encoder Flow Matching for Generative Modeling

Reference 22

Resolution: verified exact; local_arxiv, observed 2026-07-10T16:27:21.755960Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Pith citing papers

No inbound Pith citation observations are available.