Pith. sign in

Paper Citation Record · LEDGER

PLUMED Tutorials: a collaborative, community-driven learning ecosystem

As of 16 August 2026, this Paper Citation Record lists 49 of 49 outbound references and 2 inbound Pith citation observations for arXiv:2412.03595.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2412.03595 v1

Coverage vector

measured 49 of 49 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-12T06:03:52.609965Z

measured 51 of 51 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-16T06:30:59.297886+00:00

measured 2 of 2 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links, observed 2026-08-16T00:42:16.741414Z

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: pith, observed 2026-08-16T00:42:17.011916Z

Reference resolution

49 of 49 outbound references displayed

  • verified exact1
  • verified fuzzy38
  • unresolved10
  • parse uncertain0
  • malformed identifier0
  • metadata mismatch0

External citation measurements

No source-named external measurement is stored.

Outbound references

Observation 15595513-cc1e-4ae9-b21b-55cb53cc29fc · outbound

This paper cites A.; Parrinello, M.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem A.; Parrinello, M

Reference 1

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.380656Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.382793Z digest=sha256:074259fca2df72152d7befb31a2f3f614b3fbc4a57a46bc986eed73440cb22a7

Observation 351ca2f6-f59d-45ae-9edd-ea0622220bd6 · outbound

This paper cites A.; Bonomi, M.; Branduardi, D.; Camilloni, C.; Bussi, G.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem A.; Bonomi, M.; Branduardi, D.; Camilloni, C.; Bussi, G

Reference 2

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.366025Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.388119Z digest=sha256:9ea8b8fa405dd315b2f46845c8fb361cf68a08a1dadb4e53efe8dd3d6c83d123

Observation 41a70cef-423a-489d-9c9c-73a4c494d7c2 · outbound

This paper cites COVID-19 and the academy: It is time for going digital.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem COVID-19 and the academy: It is time for going digital

Reference 3

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.350389Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.392654Z digest=sha256:dfecff18142ff68ea6aabbe05925cdcd22d7452d8957ff30e4263f0d33009876

Observation db7a7676-c8ca-4f45-9f7a-ef22ceb8209b · outbound

This paper cites an unresolved cited work.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Unresolved cited work

Reference 4

Resolution
unresolved
raw_fallback, observed 2026-08-12T06:03:53.334582Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.397175Z digest=sha256:e05273a5371e929d4398688e6253ec3133ff92d0ae2b5980fe5315207ba77c62

Observation d737dbf0-5fef-4cbb-8dd0-c2664ac14e53 · outbound

This paper cites In Molecular Modeling of Proteins; Kukol, A., Ed.; Springer New York: New York, NY, 2015; pp 151--171.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem In Molecular Modeling of Proteins; Kukol, A., Ed.; Springer New York: New York, NY, 2015; pp 151--171

Reference 5

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.318750Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.402310Z digest=sha256:55409aa57be73ba0212ea1fdd55445bf41d47757ecafd967d35fa8fcb0a64b07

Observation cd9b7e80-8ab3-48e7-a4ef-9dfc630706f8 · outbound

This paper cites In Biomolecular Simulations: Methods and Protocols; Bonomi, M., Camilloni, C., Eds.; Springer New York: New York, NY, 2019; pp 313--340.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem In Biomolecular Simulations: Methods and Protocols; Bonomi, M., Camilloni, C., Eds.; Springer New York: New York, NY, 2019; pp 313--340

Reference 6

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.303629Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.406649Z digest=sha256:1f8571e371e3eaa0540db1b245c061964a11db382ebd29f354ff2820915c89a9

Observation c84ef4cc-0024-4707-85d3-674a8a27c87d · outbound

This paper cites an unresolved cited work.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Unresolved cited work

Reference 7

Resolution
unresolved
raw_fallback, observed 2026-08-12T06:03:53.288123Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.411679Z digest=sha256:7bcca44e7171c391ac48030c3e24e603cb7183467425daa9693103dc85a66307

Observation 277041b0-5d68-4d7f-8663-d3231d80bf7f · outbound

This paper cites A.; Gasparotto, P.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem A.; Gasparotto, P

Reference 8

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.272464Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.416473Z digest=sha256:3deb21c7ca86fee1e35a30181c8bec16b6917773b350e4fa88be2805a2354a06

Observation 26a4c450-7e2b-4944-9ae3-7d1065f831c1 · outbound

This paper cites A.; Gasparotto, P.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem A.; Gasparotto, P

Reference 9

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.258607Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.421096Z digest=sha256:94bbd396ec52873472b1e08f664a09d68385fa0b96971bb9977b683d4bab50d8

Observation e8b4ec77-aa0c-4e93-8daa-5238ed18fa6e · outbound

This paper cites A.; Giberti, F.; Sosso, G.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem A.; Giberti, F.; Sosso, G

Reference 10

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.244010Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.426249Z digest=sha256:01c41d72b50428410e7f70bbf798a5f5c1fcdc6561e877959167a18499bbfa87

Observation e7fc1088-42f1-4857-bbd7-b30586bb2477 · outbound

This paper cites an unresolved cited work.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Unresolved cited work

Reference 11

Resolution
unresolved
raw_fallback, observed 2026-08-12T06:03:53.228258Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.431013Z digest=sha256:5bb2a2ae814b69cda8b266bd55802c36a08ed09f4c265292552f6bf2ef8f7bfe

Observation e5bb3ad7-c490-4f30-af7f-ec7fe743a973 · outbound

This paper cites Nonphysical sampling distributions in Monte Carlo free-energy estimation: Umbrella sampling.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Nonphysical sampling distributions in Monte Carlo free-energy estimation: Umbrella sampling

Reference 12

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.213381Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.435996Z digest=sha256:0a9f883c408df4419b7c75be7e4ceaa2f1c31990cde7e7a13a75f244074470e6

Observation da0cc756-4cdd-4d88-afd2-183dcaf7ad57 · outbound

This paper cites Escaping free-energy minima.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Escaping free-energy minima

Reference 13

Resolution
unresolved
no resolver link, observed 2026-08-12T06:03:52.440893Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-12T06:03:52.440893Z digest=sha256:836411578b91990cd2725a5f9534c2b05dc950c902371c1d7e3b62175694eaa0

Observation 3d759ba4-58a8-4d0d-a94a-48135d0b67b4 · outbound

This paper cites Replica-exchange molecular dynamics method for protein folding.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Replica-exchange molecular dynamics method for protein folding

Reference 14

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.188771Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.445476Z digest=sha256:641bb7d70908aec90e8ec835f996b234c10fa3ad07b05a10279529f35f8d59f3

Observation a875991c-8f14-4c70-ae00-fb37f818c479 · outbound

This paper cites Analysis of the Results of Metadynamics Simulations by metadynminer and metadynminer3d.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Analysis of the Results of Metadynamics Simulations by metadynminer and metadynminer3d

Reference 15

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.174200Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.450030Z digest=sha256:e8fd38f5b41cf9d46ceee5517851e9f8b2fe77557169430745c0dcd3be189551

Observation c194b737-fc23-4b12-99a6-8c7106b577a3 · outbound

This paper cites A unified framework for machine learning collective variables for enhanced sampling simulations: mlcolvar.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem A unified framework for machine learning collective variables for enhanced sampling simulations: mlcolvar

Reference 16

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.159694Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.454621Z digest=sha256:2550d5c7228f08968db14752fba70cdc3bea25925e6c3fbff9eec7a10a637837

Observation 1260fe96-1e30-4767-b9a0-904aef83e5f5 · outbound

This paper cites Advanced simulations with PLUMED: OPES and Machine Learning Collective Variables.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Advanced simulations with PLUMED: OPES and Machine Learning Collective Variables

Reference 17

Resolution
unresolved
no resolver link, observed 2026-08-12T06:03:52.459485Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-12T06:03:52.459485Z digest=sha256:1b301f67e071a2be7aeaa6c586169ad97c58ab136efa647b4587e3d7af766d50

Observation b2377515-6c34-46cd-b6ce-e60eac3ad915 · outbound

This paper cites Accurate and Efficient SAXS/SANS Implementation Including Solvation Layer Effects Suitable for Molecular Simulations.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Accurate and Efficient SAXS/SANS Implementation Including Solvation Layer Effects Suitable for Molecular Simulations

Reference 18

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.144847Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.465088Z digest=sha256:6d3e6691cdddb9cc7013727e991c7d5a84cb193200a4f6ca30a8d71e8f0fc71e

Observation b1693999-7642-4437-b737-8b07ea7e3cdf · outbound

This paper cites L.; Parrinello, M.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem L.; Parrinello, M

Reference 19

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.129983Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.469619Z digest=sha256:218a1b36e6d8448d499e60627864343745e1478a42001eda6856f14f149447f2

Observation 5e6bddc1-76c8-455b-a2b4-f49665a59afe · outbound

This paper cites Ligand binding free-energy calculations with funnel metadynamics.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Ligand binding free-energy calculations with funnel metadynamics

Reference 20

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.114722Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.474430Z digest=sha256:94407c369ed12ab0ecfc3b3d3996e57e4f602002b1b7d848977cad3e93814f05

Observation 54e97e7f-663f-4210-a968-1b058a7d632c · outbound

This paper cites Exploration vs Convergence Speed in Adaptive-Bias Enhanced Sampling.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Exploration vs Convergence Speed in Adaptive-Bias Enhanced Sampling

Reference 21

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.099378Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.480661Z digest=sha256:3d12e249ca5f4daae2c20c2b425eee8a64dd5a6aba1085a49fe27b975d1b0cba

Observation d2510c59-ce28-466e-8609-67cac29c16e5 · outbound

This paper cites D.; Voth, G.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem D.; Voth, G

Reference 22

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.084750Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.485357Z digest=sha256:a1ef985f1eb5a4aa975bccfd2e59ad765969abed361b2572ac847ee050279e54

Observation 6653ca65-8f5d-401d-a8ac-15d2be36110e · outbound

This paper cites Accelerating All-Atom Simulations and Gaining Mechanistic Understanding of Biophysical Systems through State Predictive Information Bottleneck.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Accelerating All-Atom Simulations and Gaining Mechanistic Understanding of Biophysical Systems through State Predictive Information Bottleneck

Reference 23

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.070984Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.489824Z digest=sha256:3d44f16f374e12b31f843cf69d77976950c1036992201df425938c9e92d4fc7c

Observation a45970b0-1cc9-42c0-9b1d-51200ae0ced3 · outbound

This paper cites Molecular dynamics simulations of solutions at constant chemical potential.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Molecular dynamics simulations of solutions at constant chemical potential

Reference 24

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.057340Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.495962Z digest=sha256:67ccc848e0376c299bbfb091fb8ba7748351f8b8ae891c329b38178bc11f8344

Observation 2bc71ef7-8488-4334-bcfc-844c8a077ad0 · outbound

This paper cites Path Finding on High-Dimensional Free Energy Landscapes.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Path Finding on High-Dimensional Free Energy Landscapes

Reference 25

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.042655Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.500732Z digest=sha256:a5922560c71faf2ee6daa1d6d68e148aae967b814c4655d66899a9fcea981288

Observation 648a9edd-c842-49fb-86ec-d1377646baf4 · outbound

This paper cites Hamiltonian replica exchange in GROMACS: a flexible implementation.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Hamiltonian replica exchange in GROMACS: a flexible implementation

Reference 26

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.027462Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.505600Z digest=sha256:bf7be8fe874e0960f4fc3eb5ec9801ef4114842ac186f6d14bb7b5ebbb5a4156

Observation edbf6073-3e45-440a-965d-cde206fbd249 · outbound

This paper cites Improving the Efficiency of Variationally Enhanced Sampling with Wavelet-Based Bias Potentials.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Improving the Efficiency of Variationally Enhanced Sampling with Wavelet-Based Bias Potentials

Reference 27

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.012177Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.510109Z digest=sha256:5970ce873cc117b9cbc32919cc64d71a00c4cd03a4b4b84e9862a14d7986a5a0

Observation 1181888f-b425-4f54-b942-21c14b9e2935 · outbound

This paper cites M.; Parrinello, M.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem M.; Parrinello, M

Reference 28

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:52.996444Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.515132Z digest=sha256:5c61271bbbc579cbb180849d7d000f0d8f5a6c4b8e983ef3d7310b6689ac0a3c

Observation 1fcc0818-b463-44ec-abd4-9bca1c4e0952 · outbound

This paper cites A Transfer Free Energy Based Implicit Solvent Model for Protein Simulations in Solvent Mixtures: Urea-Induced Denaturation as a Case Study.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem A Transfer Free Energy Based Implicit Solvent Model for Protein Simulations in Solvent Mixtures: Urea-Induced Denaturation as a Case Study

Reference 29

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:52.981826Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.520373Z digest=sha256:a888c9fc4cbbc4cd4ead5a65ea2f40efc0e37676c5f6aa318e1256a66b526c9f

Observation 0d70dc51-6edb-426c-b94e-9f2b3d034dec · outbound

This paper cites J.; Singh, Y.; Vanden-Eijnden, E.; Hocky, G.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem J.; Singh, Y.; Vanden-Eijnden, E.; Hocky, G

Reference 30

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:52.966427Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.524624Z digest=sha256:d7461268e0c1254a0932ff38f1ec6fe2158e9b9c1fef67fc79d24c30c3e50cf3

Observation eb2bd7fb-4db9-415e-bdc3-320b0feb6b41 · outbound

This paper cites E.; Thomasen, F.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem E.; Thomasen, F

Reference 31

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:52.951338Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.529301Z digest=sha256:4b88f3f36e463cc8818d6d0c48ccb7ab17767d50ed6afceb58956bbaabb109ed

Observation 313a7096-e459-4821-b510-4878f70da6c1 · outbound

This paper cites Multi-replica biased sampling for photoswitchable -conjugated polymers.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Multi-replica biased sampling for photoswitchable -conjugated polymers

Reference 32

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:52.936632Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.533313Z digest=sha256:02b5b527ff7aecbb1e77c27b489abe5b7367d9f083196cdbee6c31b4b8564c2b

Observation 4bfef365-a492-4fc3-a0f7-c368b4582778 · outbound

This paper cites Exhaustive Search of Ligand Binding Pathways via Volume-Based Metadynamics.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Exhaustive Search of Ligand Binding Pathways via Volume-Based Metadynamics

Reference 33

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:52.920857Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.537346Z digest=sha256:d54b1915e8f500c07ab9750fd3e22431b68838e0f2bb1b88f0ff6844e1b4e86c

Observation 1c2ea486-2516-49fd-870b-f3f95151fca6 · outbound

This paper cites an unresolved cited work.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Unresolved cited work

Reference 34

Resolution
unresolved
raw_fallback, observed 2026-08-12T06:03:52.905814Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.541276Z digest=sha256:c224995ce2c7ef2361d23b263db323a79f03d20acd9b9c00dd18bfd970b1a54a

Observation 76595791-909f-4537-91fc-6223ce75d57e · outbound

This paper cites an unresolved cited work.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Unresolved cited work

Reference 35

Resolution
unresolved
raw_fallback, observed 2026-08-12T06:03:52.892152Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.545188Z digest=sha256:6e1e72e1f55d7997c61fe3e37c843cbef2168a791756f65200a10ba41a243696

Observation 9d390169-48f7-4e0e-a7ff-e2d106a474a6 · outbound

This paper cites F.; Rotskoff, G.; Parrinello, M.; Voth, G.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem F.; Rotskoff, G.; Parrinello, M.; Voth, G

Reference 36

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:52.878447Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.549593Z digest=sha256:8ea88597b06848aabec8dfe7a612ec6a9ff985db5e529984587ae4b12db4b68e

Observation a9cc22f3-e003-4ee4-adc0-aa913be707d7 · outbound

This paper cites Finding multiple reaction pathways of ligand unbinding.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Finding multiple reaction pathways of ligand unbinding

Reference 37

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:52.863526Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.554044Z digest=sha256:1eb657aa0a7425d505d8912a9d922f0bd86826c0bc6bc42d51140335307e3b4d

Observation c8d149b5-e4cb-4117-81db-f0e215cb2d81 · outbound

This paper cites Recent Advances and Emerging Challenges in the Molecular Modeling of Mechanobiological Processes.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Recent Advances and Emerging Challenges in the Molecular Modeling of Mechanobiological Processes

Reference 38

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:52.847809Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.558150Z digest=sha256:c38f9d7f208e3dffbc0e339f07294af17431872539916b78e6f58bf1e11f08e0

Observation 7f905a28-be1b-47af-ae2e-f86b379d9f4d · outbound

This paper cites E.; Cavalli, A.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem E.; Cavalli, A

Reference 39

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:52.832245Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.562400Z digest=sha256:d29a472a0a168437bba26777254c99b3b96cec13cd4754efb1c14d6dd429414a

Observation f98770bf-cab3-48b3-bdb7-de210e4396c6 · outbound

This paper cites an unresolved cited work.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Unresolved cited work

Reference 40

Resolution
unresolved
raw_fallback, observed 2026-08-12T06:03:52.816166Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.566977Z digest=sha256:24135be41c4de4dd2c55476e817212a5ea257987027d11255fc44b4a285b4619

Observation 37e85900-1b3b-469f-85c5-c67b0ef2fc53 · outbound

This paper cites F.; Zhang, S.; Vendruscolo, M.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem F.; Zhang, S.; Vendruscolo, M

Reference 41

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:52.800285Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.571758Z digest=sha256:31219f6609ba212dbd63ae96d604879895efa4eee23fade20d138ace68bb463b

Observation 5996cef8-547b-4e01-a5f4-9c5e963ecbbe · outbound

This paper cites PYCV: a PLUMED 2 Module Enabling the Rapid Prototyping of Collective Variables in Python.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem PYCV: a PLUMED 2 Module Enabling the Rapid Prototyping of Collective Variables in Python

Reference 42

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:52.784755Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.576544Z digest=sha256:94db6897c89e89007d55863460c8b622db060484e985a90a590d243d0a05d53f

Observation 066867cc-7f81-4955-8716-974078a20c67 · outbound

This paper cites an unresolved cited work.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Unresolved cited work

Reference 43

Resolution
unresolved
raw_fallback, observed 2026-08-12T06:03:52.768052Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.581311Z digest=sha256:007db99e9430e4e3693293e5afed857918cad6d838f8593215b881f4e41410ab

Observation 07ae51d5-cdb2-4bf7-98b8-c56c60b8bf49 · outbound

This paper cites M.; Pietrucci, F.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem M.; Pietrucci, F

Reference 44

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:52.754035Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.585947Z digest=sha256:34bddfb32e26651daf9c4b04b3602ec1fa7a38b21843fb0ff7addd08872360f5

Observation 37757052-a364-4711-98bf-b1afcab8853d · outbound

This paper cites Ab initio metadynamics determination of temperature-dependent free-energy landscape in ultrasmall silver clusters.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Ab initio metadynamics determination of temperature-dependent free-energy landscape in ultrasmall silver clusters

Reference 45

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:52.740450Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.590746Z digest=sha256:447049413c1554fcbb1100ff82301e5d73a785b1cd57be42c35fd4bc3ba2d0a9

Observation c2478e29-a734-494b-bf2a-4f0183f9dabe · outbound

This paper cites Characterizing RNA oligomers using Stochastic Titration Constant-pH Metadynamics simulations.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Characterizing RNA oligomers using Stochastic Titration Constant-pH Metadynamics simulations

Reference 46

Resolution
verified exact
local_arxiv, observed 2026-08-12T06:03:52.676747Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.595499Z digest=sha256:df703a3ddd4291060dad1cabe90a0ce381d65330c7b79e1cec988930865f9317

Observation 4b392386-89c9-4858-b460-b436f9d64844 · outbound

This paper cites A Bias-Exchange Approach to Protein Folding.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem A Bias-Exchange Approach to Protein Folding

Reference 47

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:52.725572Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.600371Z digest=sha256:1200457f9829a2fde4573f68b7843c5ad441df7d752870a16dd7954b644acf2f

Observation f995c583-f514-4de4-b654-7dd3dfb9f9a6 · outbound

This paper cites V.; Garey, M.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem V.; Garey, M

Reference 48

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:52.710051Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.605096Z digest=sha256:539549b87fd3fd3657ef5db2f4d5a2797a153426b7a684d69fde2f62c15106fb

Observation bf5855c6-a22b-4492-aeea-a913f61834e6 · outbound

This paper cites The need to implement FAIR principles in biomolecular simulations.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem The need to implement FAIR principles in biomolecular simulations

Reference 49

Resolution
unresolved
no resolver link, observed 2026-08-12T06:03:52.609965Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-12T06:03:52.609965Z digest=sha256:415388e28afc64720a9513b872537a4d1c6e4578fc57508752ca187b18dc5d13

Pith citing papers

Observation 78feb186-6547-4b95-a6f3-ba126d8e0330 · inbound

Machine Learning of Slow Collective Variables and Enhanced Sampling via Spatial Techniques cites this paper.

Machine Learning of Slow Collective Variables and Enhanced Sampling via Spatial Techniques PLUMED Tutorials: a collaborative, community-driven learning ecosystem

Reference 168

Resolution
unresolved
no resolver link, observed 2026-08-10T23:21:30.420589Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-10T23:21:30.420589Z digest=sha256:5c5e7aa2cf23c50b717504f1e8e4678bfad37737722b6b49b07caa6131f19434

Observation 7e34ac8a-4a9f-494a-b863-113ea7b51d1f · inbound

Elucidating Ion Capture and Transport Mechanisms of Preyssler Anions in Aqueous Solutions Using Biased MACE-Accelerated MD Simulations cites this paper.

Elucidating Ion Capture and Transport Mechanisms of Preyssler Anions in Aqueous Solutions Using Biased MACE-Accelerated MD Simulations PLUMED Tutorials: a collaborative, community-driven learning ecosystem

Reference 94

Resolution
verified exact
local_arxiv, observed 2026-08-16T00:42:17.020606Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-16T00:42:16.741414Z digest=sha256:aed38e944cd3af2d0156b77658b43d957a485633464b0f75dabcaf6b1f0df558