Pith. sign in

Paper Citation Record · LEDGER

PLUMED Tutorials: a collaborative, community-driven learning ecosystem

As of 21 August 2026, this Paper Citation Record lists 49 of 49 outbound references and 2 inbound Pith citation observations for arXiv:2412.03595.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2412.03595 v1

Coverage vector

measured 49 of 49 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-12T06:03:52.609965Z

measured 51 of 51 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-21T06:32:19.484+00:00

measured 2 of 2 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links, observed 2026-08-16T00:42:16.741414Z

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: pith, observed 2026-08-16T00:42:17.011916Z

Reference resolution

49 of 49 outbound references displayed

  • verified exact1
  • verified fuzzy38
  • unresolved10
  • parse uncertain0
  • malformed identifier0
  • metadata mismatch0

External citation measurements

No source-named external measurement is stored.

Outbound references

Observation 15595513-cc1e-4ae9-b21b-55cb53cc29fc · outbound

This paper cites A.; Parrinello, M.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem A.; Parrinello, M

Reference 1

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.380656Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.382793Z digest=sha256:dc89ff63fe88d3d8e4ec64e7183607fdff8d5d593598c8f3acdd13ef1ef66184

Observation 351ca2f6-f59d-45ae-9edd-ea0622220bd6 · outbound

This paper cites A.; Bonomi, M.; Branduardi, D.; Camilloni, C.; Bussi, G.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem A.; Bonomi, M.; Branduardi, D.; Camilloni, C.; Bussi, G

Reference 2

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.366025Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.388119Z digest=sha256:1081089e9772e2d23a63fc11a6ee228f262686db463d6bdb457910f39064d6f1

Observation 41a70cef-423a-489d-9c9c-73a4c494d7c2 · outbound

This paper cites COVID-19 and the academy: It is time for going digital.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem COVID-19 and the academy: It is time for going digital

Reference 3

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.350389Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.392654Z digest=sha256:168cb917ad8f5ca366477964168ae6270bdb1f53ec18db50362662fbeab791f4

Observation db7a7676-c8ca-4f45-9f7a-ef22ceb8209b · outbound

This paper cites an unresolved cited work.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Unresolved cited work

Reference 4

Resolution
unresolved
raw_fallback, observed 2026-08-12T06:03:53.334582Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.397175Z digest=sha256:fa7a02f27fa3351bb7144bc62707d5939bebe99adde67e93ffccda8f2d594755

Observation d737dbf0-5fef-4cbb-8dd0-c2664ac14e53 · outbound

This paper cites In Molecular Modeling of Proteins; Kukol, A., Ed.; Springer New York: New York, NY, 2015; pp 151--171.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem In Molecular Modeling of Proteins; Kukol, A., Ed.; Springer New York: New York, NY, 2015; pp 151--171

Reference 5

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.318750Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.402310Z digest=sha256:ffd743220326751126f847338971c19cf037a6e00a9c0d76e5529e5a986f00ac

Observation cd9b7e80-8ab3-48e7-a4ef-9dfc630706f8 · outbound

This paper cites In Biomolecular Simulations: Methods and Protocols; Bonomi, M., Camilloni, C., Eds.; Springer New York: New York, NY, 2019; pp 313--340.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem In Biomolecular Simulations: Methods and Protocols; Bonomi, M., Camilloni, C., Eds.; Springer New York: New York, NY, 2019; pp 313--340

Reference 6

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.303629Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.406649Z digest=sha256:d61a21137f985afa1a4ec21ef234644054b2b9dcd602c06ebd1db827e0d0d6b2

Observation c84ef4cc-0024-4707-85d3-674a8a27c87d · outbound

This paper cites an unresolved cited work.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Unresolved cited work

Reference 7

Resolution
unresolved
raw_fallback, observed 2026-08-12T06:03:53.288123Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.411679Z digest=sha256:8d1ddd8ba305fae00ed3278ab9f1cda8ef6396b216575abc8b7215bc7a89d156

Observation 277041b0-5d68-4d7f-8663-d3231d80bf7f · outbound

This paper cites A.; Gasparotto, P.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem A.; Gasparotto, P

Reference 8

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.272464Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.416473Z digest=sha256:67da52df43c7f331274d6b558fd50e57cdaba09020be3218d6d5a4c3a9536508

Observation 26a4c450-7e2b-4944-9ae3-7d1065f831c1 · outbound

This paper cites A.; Gasparotto, P.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem A.; Gasparotto, P

Reference 9

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.258607Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.421096Z digest=sha256:2825aa145cead394d6a023a1ab92ad7f124ff2258c0d853bc7b059ed4617f3b2

Observation e8b4ec77-aa0c-4e93-8daa-5238ed18fa6e · outbound

This paper cites A.; Giberti, F.; Sosso, G.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem A.; Giberti, F.; Sosso, G

Reference 10

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.244010Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.426249Z digest=sha256:089a5f1e9437dbedf27e9e3b7027ef53954ef5d397a51575f51293c48fa3f57a

Observation e7fc1088-42f1-4857-bbd7-b30586bb2477 · outbound

This paper cites an unresolved cited work.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Unresolved cited work

Reference 11

Resolution
unresolved
raw_fallback, observed 2026-08-12T06:03:53.228258Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.431013Z digest=sha256:f7fc71d20fc40e138afc601a2e1e5cfc49dd6a776a7f95cce95227fc68922e9f

Observation e5bb3ad7-c490-4f30-af7f-ec7fe743a973 · outbound

This paper cites Nonphysical sampling distributions in Monte Carlo free-energy estimation: Umbrella sampling.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Nonphysical sampling distributions in Monte Carlo free-energy estimation: Umbrella sampling

Reference 12

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.213381Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.435996Z digest=sha256:f9b7fd9205b7ea526ab8aeafb2a0c319ebd5dc39e60dbb4a26e0542e58baef9c

Observation da0cc756-4cdd-4d88-afd2-183dcaf7ad57 · outbound

This paper cites Escaping free-energy minima.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Escaping free-energy minima

Reference 13

Resolution
unresolved
no resolver link, observed 2026-08-12T06:03:52.440893Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-12T06:03:52.440893Z digest=sha256:8a8bff46baabfcd05f4847968338ab44aa28b0bfef144d916799cc241a0306e9

Observation 3d759ba4-58a8-4d0d-a94a-48135d0b67b4 · outbound

This paper cites Replica-exchange molecular dynamics method for protein folding.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Replica-exchange molecular dynamics method for protein folding

Reference 14

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.188771Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.445476Z digest=sha256:403671a567c065d127f3ddef384962658b18582dee543f3ee5bb157c84fc1dae

Observation a875991c-8f14-4c70-ae00-fb37f818c479 · outbound

This paper cites Analysis of the Results of Metadynamics Simulations by metadynminer and metadynminer3d.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Analysis of the Results of Metadynamics Simulations by metadynminer and metadynminer3d

Reference 15

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.174200Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.450030Z digest=sha256:0848febc96f14b02f90ca2385696530788599682bfbed13dbb1139a40a8c20a9

Observation c194b737-fc23-4b12-99a6-8c7106b577a3 · outbound

This paper cites A unified framework for machine learning collective variables for enhanced sampling simulations: mlcolvar.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem A unified framework for machine learning collective variables for enhanced sampling simulations: mlcolvar

Reference 16

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.159694Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.454621Z digest=sha256:93b17c7083ac3d30e18a343774c2dca6361b1097728c9d5051811ef37489fe8e

Observation 1260fe96-1e30-4767-b9a0-904aef83e5f5 · outbound

This paper cites Advanced simulations with PLUMED: OPES and Machine Learning Collective Variables.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Advanced simulations with PLUMED: OPES and Machine Learning Collective Variables

Reference 17

Resolution
unresolved
no resolver link, observed 2026-08-12T06:03:52.459485Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-12T06:03:52.459485Z digest=sha256:d09f8929157f1429fe223e811dc00a1e852da2fa99bce55c81ae3381674221d1

Observation b2377515-6c34-46cd-b6ce-e60eac3ad915 · outbound

This paper cites Accurate and Efficient SAXS/SANS Implementation Including Solvation Layer Effects Suitable for Molecular Simulations.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Accurate and Efficient SAXS/SANS Implementation Including Solvation Layer Effects Suitable for Molecular Simulations

Reference 18

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.144847Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.465088Z digest=sha256:eb8d514201e8fcfd62ec02d215ca1f29860ff80d72d03d839fcd3252e4021477

Observation b1693999-7642-4437-b737-8b07ea7e3cdf · outbound

This paper cites L.; Parrinello, M.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem L.; Parrinello, M

Reference 19

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.129983Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.469619Z digest=sha256:c8ee26f5375ad04afd3a92ec90ded00e9edbb62de51d28caae0549cfe6edc20a

Observation 5e6bddc1-76c8-455b-a2b4-f49665a59afe · outbound

This paper cites Ligand binding free-energy calculations with funnel metadynamics.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Ligand binding free-energy calculations with funnel metadynamics

Reference 20

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.114722Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.474430Z digest=sha256:1e152d0912e9474e5b5ffab6d20be4ca24377b6333fa1453ba1e99ccdee1db83

Observation 54e97e7f-663f-4210-a968-1b058a7d632c · outbound

This paper cites Exploration vs Convergence Speed in Adaptive-Bias Enhanced Sampling.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Exploration vs Convergence Speed in Adaptive-Bias Enhanced Sampling

Reference 21

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.099378Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.480661Z digest=sha256:00dbf2909e83eff62333026d2ede1a141906da008d13d39e226f9f3fa0a5aeb8

Observation d2510c59-ce28-466e-8609-67cac29c16e5 · outbound

This paper cites D.; Voth, G.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem D.; Voth, G

Reference 22

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.084750Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.485357Z digest=sha256:c332db00ceeebf340b26013e083aff8f8a2cdbc90d7afaba2f04bf809e6466b0

Observation 6653ca65-8f5d-401d-a8ac-15d2be36110e · outbound

This paper cites Accelerating All-Atom Simulations and Gaining Mechanistic Understanding of Biophysical Systems through State Predictive Information Bottleneck.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Accelerating All-Atom Simulations and Gaining Mechanistic Understanding of Biophysical Systems through State Predictive Information Bottleneck

Reference 23

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.070984Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.489824Z digest=sha256:ed20caec11cb3e5e934ffadb2391d4d5b31f1a2d351ab0b2129b95dfef7e4b61

Observation a45970b0-1cc9-42c0-9b1d-51200ae0ced3 · outbound

This paper cites Molecular dynamics simulations of solutions at constant chemical potential.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Molecular dynamics simulations of solutions at constant chemical potential

Reference 24

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.057340Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.495962Z digest=sha256:a1f0d3cd04b2f4ae3c2dc9961cd09976672b22308ff28ef8afc40c5c03e4927e

Observation 2bc71ef7-8488-4334-bcfc-844c8a077ad0 · outbound

This paper cites Path Finding on High-Dimensional Free Energy Landscapes.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Path Finding on High-Dimensional Free Energy Landscapes

Reference 25

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.042655Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.500732Z digest=sha256:089c8f8740e4ddf83c404b77929270870ded873fc7c78f2722f1bd3a7281e0ca

Observation 648a9edd-c842-49fb-86ec-d1377646baf4 · outbound

This paper cites Hamiltonian replica exchange in GROMACS: a flexible implementation.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Hamiltonian replica exchange in GROMACS: a flexible implementation

Reference 26

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.027462Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.505600Z digest=sha256:4d1c9f82d35a01383dc9bd843dafb261f59f8ea30fed1828f4183360d3a07485

Observation edbf6073-3e45-440a-965d-cde206fbd249 · outbound

This paper cites Improving the Efficiency of Variationally Enhanced Sampling with Wavelet-Based Bias Potentials.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Improving the Efficiency of Variationally Enhanced Sampling with Wavelet-Based Bias Potentials

Reference 27

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.012177Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.510109Z digest=sha256:59a07dc52b25739634bfbc682bdc9fd452b684ceee4c780332c29db39dd4db66

Observation 1181888f-b425-4f54-b942-21c14b9e2935 · outbound

This paper cites M.; Parrinello, M.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem M.; Parrinello, M

Reference 28

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:52.996444Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.515132Z digest=sha256:7705a54b65d2b1dfd50dda975c26930640cb89739e79a0ed7dc1f994ca1135ae

Observation 1fcc0818-b463-44ec-abd4-9bca1c4e0952 · outbound

This paper cites A Transfer Free Energy Based Implicit Solvent Model for Protein Simulations in Solvent Mixtures: Urea-Induced Denaturation as a Case Study.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem A Transfer Free Energy Based Implicit Solvent Model for Protein Simulations in Solvent Mixtures: Urea-Induced Denaturation as a Case Study

Reference 29

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:52.981826Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.520373Z digest=sha256:1ebf71c51b425e4431be68ef44ebd9bfa908a877128d765a69b80bb18748d47b

Observation 0d70dc51-6edb-426c-b94e-9f2b3d034dec · outbound

This paper cites J.; Singh, Y.; Vanden-Eijnden, E.; Hocky, G.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem J.; Singh, Y.; Vanden-Eijnden, E.; Hocky, G

Reference 30

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:52.966427Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.524624Z digest=sha256:ae0510625e58072f9ecacf7d4b69ede8082a02a579c39d72b4147ed81973f5cd

Observation eb2bd7fb-4db9-415e-bdc3-320b0feb6b41 · outbound

This paper cites E.; Thomasen, F.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem E.; Thomasen, F

Reference 31

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:52.951338Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.529301Z digest=sha256:21c28a55b506d9f321fe1d1afc31e4b32c22f13a063e0b5e50e146b9ed3a3949

Observation 313a7096-e459-4821-b510-4878f70da6c1 · outbound

This paper cites Multi-replica biased sampling for photoswitchable -conjugated polymers.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Multi-replica biased sampling for photoswitchable -conjugated polymers

Reference 32

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:52.936632Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.533313Z digest=sha256:7f16bfed54cd11e08573c48b57805c616e7676e0b3bcde972722ab99cf3ca8ce

Observation 4bfef365-a492-4fc3-a0f7-c368b4582778 · outbound

This paper cites Exhaustive Search of Ligand Binding Pathways via Volume-Based Metadynamics.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Exhaustive Search of Ligand Binding Pathways via Volume-Based Metadynamics

Reference 33

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:52.920857Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.537346Z digest=sha256:2a81284951c3cc99a5d824dcb50d0f595e40122c49523542dda19e20d61fefdd

Observation 1c2ea486-2516-49fd-870b-f3f95151fca6 · outbound

This paper cites an unresolved cited work.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Unresolved cited work

Reference 34

Resolution
unresolved
raw_fallback, observed 2026-08-12T06:03:52.905814Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.541276Z digest=sha256:324adf25ac53ebbdd9e44be4e09d94de994e128fe32e19115bc44c6d6d1769ac

Observation 76595791-909f-4537-91fc-6223ce75d57e · outbound

This paper cites an unresolved cited work.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Unresolved cited work

Reference 35

Resolution
unresolved
raw_fallback, observed 2026-08-12T06:03:52.892152Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.545188Z digest=sha256:685d8b638f33009e8da5a285d39d6ac6df9477edfb2fa74f66a1fca0f1c46828

Observation 9d390169-48f7-4e0e-a7ff-e2d106a474a6 · outbound

This paper cites F.; Rotskoff, G.; Parrinello, M.; Voth, G.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem F.; Rotskoff, G.; Parrinello, M.; Voth, G

Reference 36

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:52.878447Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.549593Z digest=sha256:f79a6a77e1f994c6c64989ce5736ac15cfafdb4fa5225585f72beb33370b35c6

Observation a9cc22f3-e003-4ee4-adc0-aa913be707d7 · outbound

This paper cites Finding multiple reaction pathways of ligand unbinding.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Finding multiple reaction pathways of ligand unbinding

Reference 37

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:52.863526Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.554044Z digest=sha256:22099730f128e07b57c4574ca7774210f53b17d9028a8bc264d9f19702f14abd

Observation c8d149b5-e4cb-4117-81db-f0e215cb2d81 · outbound

This paper cites Recent Advances and Emerging Challenges in the Molecular Modeling of Mechanobiological Processes.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Recent Advances and Emerging Challenges in the Molecular Modeling of Mechanobiological Processes

Reference 38

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:52.847809Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.558150Z digest=sha256:7db824216fed62d0f6ef018f7fe821e983f0cf2ae294755a062651394c13b444

Observation 7f905a28-be1b-47af-ae2e-f86b379d9f4d · outbound

This paper cites E.; Cavalli, A.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem E.; Cavalli, A

Reference 39

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:52.832245Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.562400Z digest=sha256:c31eaf8424a5f7c624e6520dfe00545be2fd2457f18f6c2cbf5925c1f9b58c1e

Observation f98770bf-cab3-48b3-bdb7-de210e4396c6 · outbound

This paper cites an unresolved cited work.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Unresolved cited work

Reference 40

Resolution
unresolved
raw_fallback, observed 2026-08-12T06:03:52.816166Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.566977Z digest=sha256:1120a0202961cd42bdc79b554721686d2548f35c2bcfc11f123b82f04a2c5764

Observation 37e85900-1b3b-469f-85c5-c67b0ef2fc53 · outbound

This paper cites F.; Zhang, S.; Vendruscolo, M.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem F.; Zhang, S.; Vendruscolo, M

Reference 41

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:52.800285Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.571758Z digest=sha256:eace1d629f7675ac6d5c5bed00ebec71ee7bba3239f4fe0cae92e150966d3c1b

Observation 5996cef8-547b-4e01-a5f4-9c5e963ecbbe · outbound

This paper cites PYCV: a PLUMED 2 Module Enabling the Rapid Prototyping of Collective Variables in Python.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem PYCV: a PLUMED 2 Module Enabling the Rapid Prototyping of Collective Variables in Python

Reference 42

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:52.784755Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.576544Z digest=sha256:0de88e13202f4426ef15ccf3bbfa619a832cd07eb3a34539a8502d172e466b43

Observation 066867cc-7f81-4955-8716-974078a20c67 · outbound

This paper cites an unresolved cited work.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Unresolved cited work

Reference 43

Resolution
unresolved
raw_fallback, observed 2026-08-12T06:03:52.768052Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.581311Z digest=sha256:f1e9d0650b9b66ff7f3ab287467a43bcb74fcc6147330020cf4b0b1b3480565f

Observation 07ae51d5-cdb2-4bf7-98b8-c56c60b8bf49 · outbound

This paper cites M.; Pietrucci, F.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem M.; Pietrucci, F

Reference 44

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:52.754035Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.585947Z digest=sha256:bbad82668b8ff0d4e7040d1f9e9c624c7c0894021506351d00185f9507d4286a

Observation 37757052-a364-4711-98bf-b1afcab8853d · outbound

This paper cites Ab initio metadynamics determination of temperature-dependent free-energy landscape in ultrasmall silver clusters.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Ab initio metadynamics determination of temperature-dependent free-energy landscape in ultrasmall silver clusters

Reference 45

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:52.740450Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.590746Z digest=sha256:22625de0be7265ca0ce2939810156c876e0abd9f7f37ef6af398ba1c51d6136f

Observation c2478e29-a734-494b-bf2a-4f0183f9dabe · outbound

This paper cites Characterizing RNA oligomers using Stochastic Titration Constant-pH Metadynamics simulations.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Characterizing RNA oligomers using Stochastic Titration Constant-pH Metadynamics simulations

Reference 46

Resolution
verified exact
local_arxiv, observed 2026-08-12T06:03:52.676747Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.595499Z digest=sha256:9d8eb8a8899a5c0e21345fd5ccb30c8e6650b56f30418e6b62dbc032d40001b5

Observation 4b392386-89c9-4858-b460-b436f9d64844 · outbound

This paper cites A Bias-Exchange Approach to Protein Folding.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem A Bias-Exchange Approach to Protein Folding

Reference 47

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:52.725572Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.600371Z digest=sha256:25581d11491ea6d8f72157a05f6aec01aebffbea35d42231587c2566e5ed9b0a

Observation f995c583-f514-4de4-b654-7dd3dfb9f9a6 · outbound

This paper cites V.; Garey, M.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem V.; Garey, M

Reference 48

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:52.710051Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.605096Z digest=sha256:99569c1786180a323566cb35879d8b38eb1dc500e69428de7f0f9c7b9d708592

Observation bf5855c6-a22b-4492-aeea-a913f61834e6 · outbound

This paper cites The need to implement FAIR principles in biomolecular simulations.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem The need to implement FAIR principles in biomolecular simulations

Reference 49

Resolution
unresolved
no resolver link, observed 2026-08-12T06:03:52.609965Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-12T06:03:52.609965Z digest=sha256:c4ec90e0454c24a73d13cbc1408163263c1805fdcf10301a730e36359f9a8aa4

Pith citing papers

Observation 78feb186-6547-4b95-a6f3-ba126d8e0330 · inbound

Machine Learning of Slow Collective Variables and Enhanced Sampling via Spatial Techniques cites this paper.

Machine Learning of Slow Collective Variables and Enhanced Sampling via Spatial Techniques PLUMED Tutorials: a collaborative, community-driven learning ecosystem

Reference 168

Resolution
unresolved
no resolver link, observed 2026-08-10T23:21:30.420589Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-10T23:21:30.420589Z digest=sha256:8b129936773a7bc30755da3b85e4217e7cd44e8be12f222291b9f7588af66e05

Observation 7e34ac8a-4a9f-494a-b863-113ea7b51d1f · inbound

Elucidating Ion Capture and Transport Mechanisms of Preyssler Anions in Aqueous Solutions Using Biased MACE-Accelerated MD Simulations cites this paper.

Elucidating Ion Capture and Transport Mechanisms of Preyssler Anions in Aqueous Solutions Using Biased MACE-Accelerated MD Simulations PLUMED Tutorials: a collaborative, community-driven learning ecosystem

Reference 94

Resolution
verified exact
local_arxiv, observed 2026-08-16T00:42:17.020606Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=arxiv_source observed=2026-08-16T00:42:16.741414Z digest=sha256:dda37fc52afc6bf76b295f4a57ae7bd71afcd396207854eab37ad3ecdbd07412