pith. sign in

arxiv: 1301.5131 · v1 · pith:5CZTRO7Dnew · submitted 2013-01-22 · 🧬 q-bio.PE · cs.DM· math.PR

The expected value of the squared euclidean cophenetic metric under the Yule and the uniform models

classification 🧬 q-bio.PE cs.DMmath.PR
keywords copheneticphylogenetictaxatreesexpectedmetricsunderuniform
0
0 comments X
read the original abstract

The cophenetic metrics $d_{\varphi,p}$, for $p\in {0}\cup[1,\infty[$, are a recent addition to the kit of available distances for the comparison of phylogenetic trees. Based on a fifty years old idea of Sokal and Rohlf, these metrics compare phylogenetic trees on a same set of taxa by encoding them by means of their vectors of cophenetic values of pairs of taxa and depths of single taxa, and then computing the $L^p$ norm of the difference of the corresponding vectors. In this paper we compute the expected value of the square of $d_{\varphi,2}$ on the space of fully resolved rooted phylogenetic trees with $n$ leaves, under the Yule and the uniform probability distributions.

This paper has not been read by Pith yet.

discussion (0)

Sign in with ORCID, Apple, or X to comment. Anyone can read and Pith papers without signing in.