Paper Citation Record · LEDGER

Modeling enzyme temperature stability from sequence segment perspective

As of 21 August 2026, this Paper Citation Record lists 48 of 48 outbound references and 0 inbound Pith citation observations for arXiv:2507.19755.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2507.19755 v1

Coverage vector

measured 48 of 48 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-06T14:08:57.507288Z

measured 48 of 48 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-21T06:32:19.484+00:00

measured 0 of 0 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: cited_works

Reference resolution

48 of 48 outbound references displayed

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verified fuzzy41
unresolved6
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External citation measurements

No source-named external measurement is stored.

Outbound references

Observation 2ea6f938-fb10-4193-873c-298e2fee5e51 · outbound

This paper cites M.; Danson, M.

Modeling enzyme temperature stability from sequence segment perspective M.; Danson, M

Reference 1

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T14:09:05.168736Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation cbcd307b-7e08-4808-ba13-cf2c30729002 · outbound

This paper cites M.; Danson, M.

Modeling enzyme temperature stability from sequence segment perspective M.; Danson, M

Reference 2

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T14:09:05.030581Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation d4a4a313-7b4a-48b4-94eb-30a95fd4e0b1 · outbound

This paper cites M.; Danson, M.

Modeling enzyme temperature stability from sequence segment perspective M.; Danson, M

Reference 3

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T14:09:04.892764Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation bd5114cb-6cee-48b3-9db0-59640cc5ce3a · outbound

This paper cites K.; Monk, C.

Modeling enzyme temperature stability from sequence segment perspective K.; Monk, C

Reference 4

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T14:09:04.733977Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 671f52cb-ebdf-4cbf-827e-88efb3bbb73c · outbound

This paper cites Recent advances in the improvement of enzyme thermostability by structure modification.

Modeling enzyme temperature stability from sequence segment perspective Recent advances in the improvement of enzyme thermostability by structure modification

Reference 5

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T14:09:04.574549Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 351c88c5-5a1c-4fd6-bdff-b0c4b8c3875d · outbound

This paper cites an unresolved cited work.

Modeling enzyme temperature stability from sequence segment perspective Unresolved cited work

Reference 6

Resolution: unresolved; raw_fallback, observed 2026-08-06T14:09:04.437009Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 3e1eb466-b7c2-4e56-b176-9b0607e52727 · outbound

This paper cites BRENDA, the ELIXIR core data resource in 2021: new developments and updates.

Modeling enzyme temperature stability from sequence segment perspective BRENDA, the ELIXIR core data resource in 2021: new developments and updates

Reference 7

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T14:09:04.285953Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 635bcde7-f072-40bd-a019-d00eccba0f75 · outbound

This paper cites Prediction of optimal pH and temperature of cellulases using neural network.

Modeling enzyme temperature stability from sequence segment perspective Prediction of optimal pH and temperature of cellulases using neural network

Reference 8

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T14:09:04.145368Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 86c91d7b-dc9a-4a98-847f-a0ba8991910c · outbound

This paper cites Predictors for predicting temperature optimum in beta-glucosidases.

Modeling enzyme temperature stability from sequence segment perspective Predictors for predicting temperature optimum in beta-glucosidases

Reference 9

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T14:09:03.987426Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation b7e22c0e-701e-45ad-817c-79367914e53c · outbound

This paper cites Prediction of xylanase optimal temperature by support vector regression.

Modeling enzyme temperature stability from sequence segment perspective Prediction of xylanase optimal temperature by support vector regression

Reference 10

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T14:09:03.854305Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 0dfef22e-2bfe-4322-8d75-076edee87b43 · outbound

This paper cites Predicting the optimum temperature of -agarase based on the relative solvent accessibility of amino acids.

Modeling enzyme temperature stability from sequence segment perspective Predicting the optimum temperature of -agarase based on the relative solvent accessibility of amino acids

Reference 11

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T14:09:03.729726Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 9525ff65-36a9-4412-a5e6-9496941d27c7 · outbound

This paper cites H.; Boroomand, A.; Ariaeenejad, S.; Hosseini Salekdeh, G.

Modeling enzyme temperature stability from sequence segment perspective H.; Boroomand, A.; Ariaeenejad, S.; Hosseini Salekdeh, G

Reference 12

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T14:09:03.584550Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 9898d5a3-cc3e-429b-b764-215d1a69e106 · outbound

This paper cites S.; Nielsen, J.; Engqvist, M.

Modeling enzyme temperature stability from sequence segment perspective S.; Nielsen, J.; Engqvist, M

Reference 13

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T14:09:03.428031Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 819decdd-adff-4951-8b03-157e447fcf61 · outbound

This paper cites E.; Beckham, G.

Modeling enzyme temperature stability from sequence segment perspective E.; Beckham, G

Reference 14

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T14:09:03.307472Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation ecc3eee5-5fd1-4174-9469-27476877c885 · outbound

This paper cites Artificial Intelligence-Powered Construction of a Microbial Optimal Growth Temperature Database and Its Impact on Enzyme Optimal Temperature Prediction.

Modeling enzyme temperature stability from sequence segment perspective Artificial Intelligence-Powered Construction of a Microbial Optimal Growth Temperature Database and Its Impact on Enzyme Optimal Temperature Prediction

Reference 15

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T14:09:03.176444Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 8ab7c670-92fb-4097-80f2-528304bfa5f0 · outbound

This paper cites an unresolved cited work.

Modeling enzyme temperature stability from sequence segment perspective Unresolved cited work

Reference 16

Resolution: unresolved; raw_fallback, observed 2026-08-06T14:09:03.021181Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation f25baae5-5481-48d5-bae0-037e04bd94c7 · outbound

This paper cites A novel thermophilic chitinase directly mined from the marine metagenome using the deep learning tool Preoptem.

Modeling enzyme temperature stability from sequence segment perspective A novel thermophilic chitinase directly mined from the marine metagenome using the deep learning tool Preoptem

Reference 17

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T14:09:02.868221Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation b4296491-71b6-41ea-b379-22064bad9d02 · outbound

This paper cites Seq2Topt: a sequence-based deep learning predictor of enzyme optimal temperature.

Modeling enzyme temperature stability from sequence segment perspective Seq2Topt: a sequence-based deep learning predictor of enzyme optimal temperature

Reference 18

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T14:09:02.734960Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 33a4e889-df19-48a4-80ff-dbc078b4afa2 · outbound

This paper cites ProtTrans: Towards Cracking the Language of Lifes Code Through Self-Supervised Deep Learning and High Performance Computing.

Modeling enzyme temperature stability from sequence segment perspective ProtTrans: Towards Cracking the Language of Lifes Code Through Self-Supervised Deep Learning and High Performance Computing

Reference 19

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T14:09:02.607933Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation c689a448-e127-498d-955c-ebdb4ffac9e0 · outbound

This paper cites bioRxiv 2022,.

Modeling enzyme temperature stability from sequence segment perspective bioRxiv 2022,

Reference 20

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T14:09:02.455656Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 47233fd7-0bb9-41da-8af5-cda92bca052c · outbound

This paper cites G.; Mutabdzija, L.; Poudel, N.; Papageorgiou, A.

Modeling enzyme temperature stability from sequence segment perspective G.; Mutabdzija, L.; Poudel, N.; Papageorgiou, A

Reference 21

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T14:09:02.302032Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation ee2649ee-fbf8-4c65-ae4e-8b9aa8f576de · outbound

This paper cites Protein thermal stability enhancement by designing salt bridges: a combined computational and experimental study.

Modeling enzyme temperature stability from sequence segment perspective Protein thermal stability enhancement by designing salt bridges: a combined computational and experimental study

Reference 22

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T14:09:02.136604Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 14e1c60c-00d4-472b-9484-e924040905b1 · outbound

This paper cites Aromatic clusters: a determinant of thermal stability of thermophilic proteins.

Modeling enzyme temperature stability from sequence segment perspective Aromatic clusters: a determinant of thermal stability of thermophilic proteins

Reference 23

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T14:09:01.963309Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 3739bf8a-7ec1-489e-bd4f-fba7fca607a7 · outbound

This paper cites FireProt: web server for automated design of thermostable proteins.

Modeling enzyme temperature stability from sequence segment perspective FireProt: web server for automated design of thermostable proteins

Reference 24

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T14:09:01.835255Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 8c67b29b-e685-45b5-b4d4-3ddd8ec8aa82 · outbound

This paper cites RosettaDesign server for protein design.

Modeling enzyme temperature stability from sequence segment perspective RosettaDesign server for protein design

Reference 25

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T14:09:01.671751Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 4230282e-cd15-41a2-8d8b-d4f638de892c · outbound

This paper cites an unresolved cited work.

Modeling enzyme temperature stability from sequence segment perspective Unresolved cited work

Reference 26

Resolution: unresolved; raw_fallback, observed 2026-08-06T14:09:01.500877Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 09a35fee-2f36-471d-9be8-ed0886060b9f · outbound

This paper cites E.; Knotts, M.; Shaw, A.

Modeling enzyme temperature stability from sequence segment perspective E.; Knotts, M.; Shaw, A

Reference 27

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T14:09:01.277488Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 0aaab98a-70f4-4489-bfc6-67f6ebf2c2ce · outbound

This paper cites MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets.

Modeling enzyme temperature stability from sequence segment perspective MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets

Reference 28

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T14:09:01.106661Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation b130a6dd-34ab-4b3b-8f3c-f93011653282 · outbound

This paper cites Science 2023, 379, 1123--1130.

Modeling enzyme temperature stability from sequence segment perspective Science 2023, 379, 1123--1130

Reference 29

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T14:09:00.936035Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation b66569b6-f56d-4de2-8cff-0088a8e1c35d · outbound

This paper cites Visualizing Data using t-SNE.

Modeling enzyme temperature stability from sequence segment perspective Visualizing Data using t-SNE

Reference 30

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T14:09:00.746532Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 514090d5-b1ba-4876-8dc5-bb65bc952b0d · outbound

This paper cites Trehalose promotes high-level heterologous expression of 4, 6- -glucanotransferase GtfR2 in Escherichia coli and mechanistic analysis.

Modeling enzyme temperature stability from sequence segment perspective Trehalose promotes high-level heterologous expression of 4, 6- -glucanotransferase GtfR2 in Escherichia coli and mechanistic analysis

Reference 31

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T14:09:00.594727Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation a16db676-31db-44a0-bbd3-a1691158b47e · outbound

This paper cites R.; Cheatham III, T.

Modeling enzyme temperature stability from sequence segment perspective R.; Cheatham III, T

Reference 32

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T14:09:00.463846Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation c3c9c803-b356-4417-a856-6d3c7c3145a5 · outbound

This paper cites an unresolved cited work.

Modeling enzyme temperature stability from sequence segment perspective Unresolved cited work

Reference 33

Resolution: unresolved; raw_fallback, observed 2026-08-06T14:09:00.293075Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation a9c2cad0-f808-48f1-9578-acbb8b43a780 · outbound

This paper cites Natural language processing (almost) from scratch.

Modeling enzyme temperature stability from sequence segment perspective Natural language processing (almost) from scratch

Reference 34

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T14:09:00.096159Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 0a08ba9d-2079-4f16-9387-c14eec04ac7f · outbound

This paper cites N.; Kaiser, .; Polosukhin, I.

Modeling enzyme temperature stability from sequence segment perspective N.; Kaiser, .; Polosukhin, I

Reference 35

Resolution: unresolved; no resolver link, observed 2026-08-06T14:08:56.219881Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 7b9f830d-0b20-4b14-9896-2fa5820bf587 · outbound

This paper cites Light attention predicts protein location from the language of life.

Modeling enzyme temperature stability from sequence segment perspective Light attention predicts protein location from the language of life

Reference 36

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T14:08:59.966653Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 95bf5e8d-5dfd-4faf-a576-d04b6cb9288a · outbound

This paper cites an unresolved cited work.

Modeling enzyme temperature stability from sequence segment perspective Unresolved cited work

Reference 37

Resolution: unresolved; raw_fallback, observed 2026-08-06T14:08:59.824408Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 912366ee-e61e-4a83-a292-6ef362b3271c · outbound

This paper cites TemStaPro: protein thermostability prediction using sequence representations from protein language models.

Modeling enzyme temperature stability from sequence segment perspective TemStaPro: protein thermostability prediction using sequence representations from protein language models

Reference 38

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T14:08:59.691463Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 30c77bce-3209-4875-8bea-ef557216a3a3 · outbound

This paper cites Seq2Topt: a sequence-based deep learning predictor of enzyme optimal temperature.

Modeling enzyme temperature stability from sequence segment perspective Seq2Topt: a sequence-based deep learning predictor of enzyme optimal temperature

Reference 39

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T14:08:59.525690Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 99ee81f5-1c82-4ac0-95f3-03e02c05e691 · outbound

This paper cites D.; Hauer, B.

Modeling enzyme temperature stability from sequence segment perspective D.; Hauer, B

Reference 40

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T14:08:59.321255Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 5169eb3f-4792-48dc-b3c8-c4a9d554c4d9 · outbound

This paper cites N.; Basore, D.; Butterfoss, G.

Modeling enzyme temperature stability from sequence segment perspective N.; Basore, D.; Butterfoss, G

Reference 41

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T14:08:59.153991Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 27bd81e1-1b29-4738-8190-e3c822eccb8f · outbound

This paper cites T.; de Vlieg, J.; Martinez, C.; Cambillau, C.

Modeling enzyme temperature stability from sequence segment perspective T.; de Vlieg, J.; Martinez, C.; Cambillau, C

Reference 42

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T14:08:58.933771Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 4f8bd422-03db-40ee-873f-23932f720210 · outbound

This paper cites L.; Cox, R.

Modeling enzyme temperature stability from sequence segment perspective L.; Cox, R

Reference 43

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T14:08:58.744329Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 70b50d02-5748-4585-8353-d9018b528fdd · outbound

This paper cites Structure-activity of cutinase, a small lipolytic enzyme.

Modeling enzyme temperature stability from sequence segment perspective Structure-activity of cutinase, a small lipolytic enzyme

Reference 44

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T14:08:58.555867Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation ac240286-6746-4620-9c41-0648b2270e7d · outbound

This paper cites R.; de Vlieg, J.

Modeling enzyme temperature stability from sequence segment perspective R.; de Vlieg, J

Reference 45

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T14:08:58.322854Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 0dbe5a56-fd41-4505-8b57-abcdef8c17c5 · outbound

This paper cites M.; Casal, M.; Cavaco-Paulo, A.

Modeling enzyme temperature stability from sequence segment perspective M.; Casal, M.; Cavaco-Paulo, A

Reference 46

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T14:08:58.105012Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 02aad386-2d2b-4e51-b5ab-a8e9c6db995f · outbound

This paper cites Cutinase: characteristics, preparation, and application.

Modeling enzyme temperature stability from sequence segment perspective Cutinase: characteristics, preparation, and application

Reference 47

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T14:08:57.952461Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 45ab51ea-6205-4727-9d67-167de9d79c99 · outbound

This paper cites Campbell, S. L. and Gear, C. W.

Modeling enzyme temperature stability from sequence segment perspective Campbell, S. L. and Gear, C. W

Reference 48

Resolution: metadata mismatch; raw_fallback, observed 2026-08-06T14:08:57.771184Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Pith citing papers

No inbound Pith citation observations are available.