Paper Citation Record · LEDGER

Multimodal Modeling of CRISPR-Cas12 Activity Using Foundation Models and Chromatin Accessibility Data

As of 19 August 2026, this Paper Citation Record lists 35 of 35 outbound references and 0 inbound Pith citation observations for arXiv:2506.11182.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2506.11182 v1

Coverage vector

measured 35 of 35 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-07T04:22:28.232392Z

measured 35 of 35 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-18T06:34:40.430872+00:00

measured 0 of 0 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: cited_works

Reference resolution

35 of 35 outbound references displayed

verified exact2
verified fuzzy24
unresolved9
parse uncertain0
malformed identifier0
metadata mismatch0

External citation measurements

No source-named external measurement is stored.

Outbound references

Observation 15079e36-b5a7-4293-8454-a4b722f91287 · outbound

This paper cites Pre-trained language models for biological sequences at the scale of the human genome.

Multimodal Modeling of CRISPR-Cas12 Activity Using Foundation Models and Chromatin Accessibility Data Pre-trained language models for biological sequences at the scale of the human genome

Reference 1

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T04:22:28.747974Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

Observation 4a477440-d6f2-4112-84e3-b7cbb1caf829 · outbound

This paper cites G., Ku, J., Poli, M., Brockman, G., Chang, D., Gonzalez, G.

Multimodal Modeling of CRISPR-Cas12 Activity Using Foundation Models and Chromatin Accessibility Data G., Ku, J., Poli, M., Brockman, G., Chang, D., Gonzalez, G

Reference 2

Resolution: unresolved; no resolver link, observed 2026-08-07T04:22:24.894317Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation bfe2b534-10b9-4f2c-9e25-d7dec2d585a4 · outbound

This paper cites Rna foundation model enables prediction of transcriptome and structural dynamics.

Multimodal Modeling of CRISPR-Cas12 Activity Using Foundation Models and Chromatin Accessibility Data Rna foundation model enables prediction of transcriptome and structural dynamics

Reference 3

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T04:22:28.723141Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

Observation 804e2908-ac9f-4a6e-ab31-d6939c198b41 · outbound

This paper cites Self-supervised learning on millions of pre-mrna sequences improves sequence-based rna splicing prediction.

Multimodal Modeling of CRISPR-Cas12 Activity Using Foundation Models and Chromatin Accessibility Data Self-supervised learning on millions of pre-mrna sequences improves sequence-based rna splicing prediction

Reference 4

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T04:22:28.708375Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

Observation 87e24a30-5aaf-41c1-af9c-ba9610a56849 · outbound

This paper cites and Guestrin, C.

Multimodal Modeling of CRISPR-Cas12 Activity Using Foundation Models and Chromatin Accessibility Data and Guestrin, C

Reference 5

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T04:22:28.692928Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

Observation 21245f16-fdc5-4485-a4f0-0c8d78ca3202 · outbound

This paper cites H., Oteri, F., Dallago, C., Trop, E., de Almeida, B.

Multimodal Modeling of CRISPR-Cas12 Activity Using Foundation Models and Chromatin Accessibility Data H., Oteri, F., Dallago, C., Trop, E., de Almeida, B

Reference 6

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T04:22:28.677940Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

Observation 3b628cf1-f2d4-47f9-835a-74030d1487b3 · outbound

This paper cites G., Fusi, N., Sullender, M., Hegde, M., Vaimberg, E.

Multimodal Modeling of CRISPR-Cas12 Activity Using Foundation Models and Chromatin Accessibility Data G., Fusi, N., Sullender, M., Hegde, M., Vaimberg, E

Reference 7

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T04:22:28.663557Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

Observation c152eb19-6f0b-4e38-8f7f-8754bb88b920 · outbound

This paper cites Prottrans: Towards cracking the language of life’s code through self-supervised deep learning and high performance computing.

Multimodal Modeling of CRISPR-Cas12 Activity Using Foundation Models and Chromatin Accessibility Data Prottrans: Towards cracking the language of life’s code through self-supervised deep learning and high performance computing

Reference 8

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T04:22:28.646882Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

Observation 05d5a6bb-862e-4cd5-aacd-4028315f3b33 · outbound

This paper cites Deeper learning of human regulatory variants from large-scale genome sequencing data.

Multimodal Modeling of CRISPR-Cas12 Activity Using Foundation Models and Chromatin Accessibility Data Deeper learning of human regulatory variants from large-scale genome sequencing data

Reference 9

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T04:22:28.632471Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

Observation 197b15df-5cb4-4a5f-9a5f-52ba6bd611d9 · outbound

This paper cites S., Wang, X., Li, H., and Zhou, J.

Multimodal Modeling of CRISPR-Cas12 Activity Using Foundation Models and Chromatin Accessibility Data S., Wang, X., Li, H., and Zhou, J

Reference 10

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T04:22:28.617198Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

Observation 3613e3cb-3fc8-4f9f-bcaf-bce13f5bc20b · outbound

This paper cites an unresolved cited work.

Multimodal Modeling of CRISPR-Cas12 Activity Using Foundation Models and Chromatin Accessibility Data Unresolved cited work

Reference 11

Resolution: unresolved; no resolver link, observed 2026-08-07T04:22:25.699737Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 73546842-0a93-4299-a925-28aade164d88 · outbound

This paper cites D., Scott, D.

Multimodal Modeling of CRISPR-Cas12 Activity Using Foundation Models and Chromatin Accessibility Data D., Scott, D

Reference 12

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T04:22:28.592868Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

Observation 9044ed39-5184-48c4-86ab-7d8038a6f16f · outbound

This paper cites an unresolved cited work.

Multimodal Modeling of CRISPR-Cas12 Activity Using Foundation Models and Chromatin Accessibility Data Unresolved cited work

Reference 13

Resolution: unresolved; no resolver link, observed 2026-08-07T04:22:25.925806Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 1f425421-885d-4f89-b81f-c572ed898e5b · outbound

This paper cites K., Song, M., Lee, J., Menon, A.

Multimodal Modeling of CRISPR-Cas12 Activity Using Foundation Models and Chromatin Accessibility Data K., Song, M., Lee, J., Menon, A

Reference 14

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T04:22:28.568679Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

Observation 26df6bf5-56ab-40d1-9583-32618917f416 · outbound

This paper cites K., Min, S., Song, M., Jung, S., Choi, J.

Multimodal Modeling of CRISPR-Cas12 Activity Using Foundation Models and Chromatin Accessibility Data K., Min, S., Song, M., Jung, S., Choi, J

Reference 15

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T04:22:28.554734Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

Observation 79d9cba6-b9ac-4be6-a54c-a967717d1b74 · outbound

This paper cites W., Kim, Y.-H., Lee, S., Yoon, S., and Kim, H.

Multimodal Modeling of CRISPR-Cas12 Activity Using Foundation Models and Chromatin Accessibility Data W., Kim, Y.-H., Lee, S., Yoon, S., and Kim, H

Reference 16

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T04:22:28.540610Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

Observation 7d741073-f7a7-4097-8a9b-b225a582232b · outbound

This paper cites P., Tsai, S.

Multimodal Modeling of CRISPR-Cas12 Activity Using Foundation Models and Chromatin Accessibility Data P., Tsai, S

Reference 17

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T04:22:28.526189Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

Observation c6887034-72fc-431c-bf30-ee6079965696 · outbound

This paper cites Crafting papers on machine learning.

Multimodal Modeling of CRISPR-Cas12 Activity Using Foundation Models and Chromatin Accessibility Data Crafting papers on machine learning

Reference 18

Resolution: unresolved; no resolver link, observed 2026-08-07T04:22:26.483535Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 705c57dd-4ae8-4575-bac6-bef811d16029 · outbound

This paper cites and Salzberg, S.

Multimodal Modeling of CRISPR-Cas12 Activity Using Foundation Models and Chromatin Accessibility Data and Salzberg, S

Reference 19

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T04:22:28.501780Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

Observation eadf98d1-75e9-47f5-b67f-3a21555d05cb · outbound

This paper cites Evolutionary-scale prediction of atomic-level protein structure with a language model.

Multimodal Modeling of CRISPR-Cas12 Activity Using Foundation Models and Chromatin Accessibility Data Evolutionary-scale prediction of atomic-level protein structure with a language model

Reference 20

Resolution: unresolved; no resolver link, observed 2026-08-07T04:22:26.695132Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 2b69bd48-a1cf-4338-8363-8e99339a0468 · outbound

This paper cites A., Vejnar, C.

Multimodal Modeling of CRISPR-Cas12 Activity Using Foundation Models and Chromatin Accessibility Data A., Vejnar, C

Reference 21

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T04:22:28.478348Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

Observation 45a4b1d3-be5a-4640-b1f4-fb018b1fd79b · outbound

This paper cites G., Kang, B., Katrekar, D., Li, D.

Multimodal Modeling of CRISPR-Cas12 Activity Using Foundation Models and Chromatin Accessibility Data G., Kang, B., Katrekar, D., Li, D

Reference 22

Resolution: unresolved; no resolver link, observed 2026-08-07T04:22:26.976601Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 194e1fd6-b4bf-4a67-b9ef-31c0a6038296 · outbound

This paper cites RiNALMo: General-Purpose RNA Language Models Can Generalize Well on Structure Prediction Tasks.

Multimodal Modeling of CRISPR-Cas12 Activity Using Foundation Models and Chromatin Accessibility Data RiNALMo: General-Purpose RNA Language Models Can Generalize Well on Structure Prediction Tasks

Reference 23

Resolution: unresolved; no resolver link, observed 2026-08-07T04:22:27.069742Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 99b48f90-78e7-485e-86ed-097f829a92da · outbound

This paper cites A., Combs, S., Mansi, T., Scheer, J., and Liao, R.

Multimodal Modeling of CRISPR-Cas12 Activity Using Foundation Models and Chromatin Accessibility Data A., Combs, S., Mansi, T., Scheer, J., and Liao, R

Reference 24

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T04:22:28.452221Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

Observation ae391bab-df80-4862-99b0-e9535d30fb9c · outbound

This paper cites an unresolved cited work.

Multimodal Modeling of CRISPR-Cas12 Activity Using Foundation Models and Chromatin Accessibility Data Unresolved cited work

Reference 25

Resolution: unresolved; raw_fallback, observed 2026-08-07T04:22:28.437746Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

Observation e7fa9761-d07b-4eae-84ee-64102a4f2cf3 · outbound

This paper cites Regression shrinkage and selection via the lasso.

Multimodal Modeling of CRISPR-Cas12 Activity Using Foundation Models and Chromatin Accessibility Data Regression shrinkage and selection via the lasso

Reference 26

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T04:22:28.423891Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

Observation 987dd89a-f7c9-4a8d-9a59-9984a269b0b5 · outbound

This paper cites A., Wu, Q., Wu, D., Cong, L., Zhang, F., Liu, X.

Multimodal Modeling of CRISPR-Cas12 Activity Using Foundation Models and Chromatin Accessibility Data A., Wu, Q., Wu, D., Cong, L., Zhang, F., Liu, X

Reference 27

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T04:22:28.408886Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

Observation 6e9b3992-ef41-4e1a-b104-5cb7943e4d45 · outbound

This paper cites Deciphering 3'utr mediated gene regulation using interpretable deep representation learning.

Multimodal Modeling of CRISPR-Cas12 Activity Using Foundation Models and Chromatin Accessibility Data Deciphering 3'utr mediated gene regulation using interpretable deep representation learning

Reference 28

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T04:22:28.392597Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

Observation 1df916ca-3fdb-4106-a086-c8c343918b5b · outbound

This paper cites HELM: Hierarchical Encoding for mRNA Language Modeling.

Multimodal Modeling of CRISPR-Cas12 Activity Using Foundation Models and Chromatin Accessibility Data HELM: Hierarchical Encoding for mRNA Language Modeling

Reference 29

Resolution: verified exact; local_arxiv, observed 2026-08-07T04:22:28.294492Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

Observation 90bb85c8-91ea-48ec-bad3-50f824dcc777 · outbound

This paper cites S., Abudayyeh, O.

Multimodal Modeling of CRISPR-Cas12 Activity Using Foundation Models and Chromatin Accessibility Data S., Abudayyeh, O

Reference 30

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T04:22:28.378619Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

Observation 74f85f82-e746-4696-9521-4bff0b6dc07d · outbound

This paper cites A., Eeckhoute, J., Johnson, D.

Multimodal Modeling of CRISPR-Cas12 Activity Using Foundation Models and Chromatin Accessibility Data A., Eeckhoute, J., Johnson, D

Reference 31

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T04:22:28.364995Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

Observation 0e57a193-6518-4b53-a146-7cf03c5db32a · outbound

This paper cites grna-fm: Foundation models for crispr-cas9 grna representation.

Multimodal Modeling of CRISPR-Cas12 Activity Using Foundation Models and Chromatin Accessibility Data grna-fm: Foundation models for crispr-cas9 grna representation

Reference 32

Resolution: verified exact; doi, observed 2026-08-07T04:22:28.273118Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

Observation 0ba6a565-6646-4703-9326-f46bdaa7f814 · outbound

This paper cites V., and Liu, H.

Multimodal Modeling of CRISPR-Cas12 Activity Using Foundation Models and Chromatin Accessibility Data V., and Liu, H

Reference 33

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T04:22:28.350595Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

Observation 9e8b8fd3-4f1b-4e31-94c4-67e8e3bc6b3b · outbound

This paper cites and Hastie, T.

Multimodal Modeling of CRISPR-Cas12 Activity Using Foundation Models and Chromatin Accessibility Data and Hastie, T

Reference 34

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T04:22:28.336623Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

Observation f7033d1c-ad39-47f6-81e5-9d076c282639 · outbound

This paper cites write newline.

Multimodal Modeling of CRISPR-Cas12 Activity Using Foundation Models and Chromatin Accessibility Data write newline

Reference 35

Resolution: unresolved; no resolver link, observed 2026-08-07T04:22:28.232392Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Pith citing papers

No inbound Pith citation observations are available.