Paper Citation Record · LEDGER

IntFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction

As of 8 August 2026, this Paper Citation Record lists 38 of 38 outbound references and 0 inbound Pith citation observations for arXiv:2507.02025.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2507.02025 v2

Coverage vector

measured 38 of 38 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-06T20:48:59.959265Z

measured 38 of 38 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-08T06:32:00.761636+00:00

measured 0 of 0 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: cited_works

Reference resolution

38 of 38 outbound references displayed

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verified fuzzy33
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External citation measurements

No source-named external measurement is stored.

Outbound references

Observation f89fca02-5d79-46b0-a6e2-3747fc857983 · outbound

This paper cites Highly accurate protein structure prediction with AlphaFold.

IntFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction Highly accurate protein structure prediction with AlphaFold

Reference 1

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:49:15.500252Z

Source-reported events for the cited work

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Observation cade1afb-e870-4145-b01e-e5386ef02d0b · outbound

This paper cites AccuratestructurepredictionofbiomolecularinteractionswithAlphaFold 3.

IntFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction AccuratestructurepredictionofbiomolecularinteractionswithAlphaFold 3

Reference 2

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:49:15.275025Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 9af0b641-2de6-474c-ae18-ab2d984188bc · outbound

This paper cites Challenge for Deep Learning: Protein Structure Prediction of Ligand- Induced Conformational Changes at Allosteric and Orthosteric Sites.

IntFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction Challenge for Deep Learning: Protein Structure Prediction of Ligand- Induced Conformational Changes at Allosteric and Orthosteric Sites

Reference 3

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:49:15.021632Z

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Observation cf4d45f3-8b58-41ee-b4db-a03fda972ae7 · outbound

This paper cites FoldBench: An All-atom Benchmark for Biomolecular Structure Prediction.

IntFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction FoldBench: An All-atom Benchmark for Biomolecular Structure Prediction

Reference 4

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:49:14.751480Z

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Observation 81b1cfab-699f-472d-842f-9d0969b101e2 · outbound

This paper cites Boltz-1: Democratizing Biomolecular Interaction Modeling.

IntFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction Boltz-1: Democratizing Biomolecular Interaction Modeling

Reference 5

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:49:14.470234Z

Source-reported events for the cited work

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Observation 08753230-4007-47e2-b0ac-558d93fbaf69 · outbound

This paper cites Boltz-2: Towards Accurate and Efficient Binding Affinity Prediction.

IntFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction Boltz-2: Towards Accurate and Efficient Binding Affinity Prediction

Reference 6

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:49:14.244855Z

Source-reported events for the cited work

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Observation 4d6d9dae-6aa0-46f4-824f-54bd9eedc4a0 · outbound

This paper cites Chai-1: Decoding the molecular interactions of life.

IntFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction Chai-1: Decoding the molecular interactions of life

Reference 7

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:49:13.998643Z

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Observation 5a60b337-1c15-4643-b69e-7176f11df139 · outbound

This paper cites Technical Report of HelixFold3 for Biomolecular Structure Prediction.

IntFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction Technical Report of HelixFold3 for Biomolecular Structure Prediction

Reference 8

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Source-reported events for the cited work

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Observation 0a8aa4e0-1fba-4802-a1ef-903240b9fba4 · outbound

This paper cites Protenix-advancing structure prediction through a comprehensive AlphaFold3 reproduction.

IntFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction Protenix-advancing structure prediction through a comprehensive AlphaFold3 reproduction

Reference 9

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:49:13.781271Z

Source-reported events for the cited work

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Observation f29d0716-81dd-4247-81d8-0a3f5c1dc474 · outbound

This paper cites PoseBusters: AI-based docking methods fail to generate physically valid poses or generalise to novel sequences.

IntFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction PoseBusters: AI-based docking methods fail to generate physically valid poses or generalise to novel sequences

Reference 10

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:49:13.522152Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation b7c5e9a9-d20e-4a1c-8218-fdeb20988af2 · outbound

This paper cites Comprehensive analysis of kinase inhibitor selectivity.

IntFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction Comprehensive analysis of kinase inhibitor selectivity

Reference 11

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:49:11.688931Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation b6fed051-3c8b-4416-9c8c-fd87d0bb32f1 · outbound

This paper cites BindingDB: a web-accessible database of experimentally determined protein– ligand binding affinities.

IntFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction BindingDB: a web-accessible database of experimentally determined protein– ligand binding affinities

Reference 12

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:49:06.932358Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 8dcdad8a-d5dc-491f-bbbc-3eacc9f8c2e6 · outbound

This paper cites Assessmentofpharmaceuticalprotein-ligandposeandaffinitypredictions in CASP16.

IntFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction Assessmentofpharmaceuticalprotein-ligandposeandaffinitypredictions in CASP16

Reference 13

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:49:06.631961Z

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No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 2ed07a4a-7708-48c8-8ba6-ffabc2c48ef0 · outbound

This paper cites The protein data bank.

IntFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction The protein data bank

Reference 14

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:49:06.339283Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation eca16b4f-c65e-46af-a346-6432b4143e06 · outbound

This paper cites AlphaFold Protein Structure Database: massively expanding the structural coverage of protein-sequence space with high-accuracy models.

IntFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction AlphaFold Protein Structure Database: massively expanding the structural coverage of protein-sequence space with high-accuracy models

Reference 15

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:49:06.069916Z

Source-reported events for the cited work

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Observation c7938328-9c1b-4846-aff9-9a332e417ab8 · outbound

This paper cites Simulating 500 million years of evolution with a language model.

IntFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction Simulating 500 million years of evolution with a language model

Reference 16

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:49:05.729747Z

Source-reported events for the cited work

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Observation d9aa486a-f8ad-483a-b863-478666c5d3a3 · outbound

This paper cites MGnify: the microbiome analysis resource in 2020.

IntFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction MGnify: the microbiome analysis resource in 2020

Reference 17

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:49:05.455206Z

Source-reported events for the cited work

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Observation 1676bebf-6390-4f05-b28c-7d8f65466e25 · outbound

This paper cites Protein complex prediction with AlphaFold-Multimer.

IntFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction Protein complex prediction with AlphaFold-Multimer

Reference 18

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:49:05.148639Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 47a2626b-b825-45e6-bf71-8ff75e8eebb1 · outbound

This paper cites The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody sequences and structures.

IntFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody sequences and structures

Reference 19

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:49:04.813091Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 9283b24b-631d-4ff1-bfa2-08d5d75fee44 · outbound

This paper cites The ChEMBL Database in 2023: a drug discovery platform spanning multiple bioactivity data types and time periods.

IntFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction The ChEMBL Database in 2023: a drug discovery platform spanning multiple bioactivity data types and time periods

Reference 20

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:49:04.507238Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 03a14c0a-bf64-4b0c-a251-a56d1dd95f1a · outbound

This paper cites Structure-aware multimodal deep learning for drug–protein interaction prediction.

IntFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction Structure-aware multimodal deep learning for drug–protein interaction prediction

Reference 21

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:49:04.143694Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation df7b9e5b-8946-42d4-a4fa-64a584c69032 · outbound

This paper cites BioLiP: a semi-manually curated database for biologically relevant ligand–protein interactions.

IntFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction BioLiP: a semi-manually curated database for biologically relevant ligand–protein interactions

Reference 22

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:49:03.818593Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation b97f1b68-856d-474d-bb1a-eb6bea2843c8 · outbound

This paper cites PubChem 2023 update.

IntFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction PubChem 2023 update

Reference 23

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:49:03.535251Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 3eed8279-a9b4-4833-b123-5e52ebc18fb6 · outbound

This paper cites ExCAPE-DB: an integrated large scale dataset facilitating Big Data analysis in chemogenomics.

IntFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction ExCAPE-DB: an integrated large scale dataset facilitating Big Data analysis in chemogenomics

Reference 24

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:49:03.187835Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 48b127ee-a01a-4a21-bd0b-eed8aacab61a · outbound

This paper cites Hidden Markov model speed heuristic and iterative HMM search procedure.

IntFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction Hidden Markov model speed heuristic and iterative HMM search procedure

Reference 25

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:49:02.997649Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 7a714ec4-7b1b-4c44-9071-20785372002b · outbound

This paper cites UniProt: the Universal Protein Knowledgebase in 2023.

IntFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction UniProt: the Universal Protein Knowledgebase in 2023

Reference 26

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Source-reported events for the cited work

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Observation 344ada03-50fa-45f5-a368-c76aacbb7578 · outbound

This paper cites ColabFold: making protein folding accessible to all.

IntFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction ColabFold: making protein folding accessible to all

Reference 27

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:49:02.703439Z

Source-reported events for the cited work

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Observation 844c9ff6-37c0-4b7e-a4de-efd3c63bdf97 · outbound

This paper cites MMseqs2 enables sensitive protein sequence search- ing for the analysis of massive data sets.

IntFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction MMseqs2 enables sensitive protein sequence search- ing for the analysis of massive data sets

Reference 28

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:49:02.336554Z

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Observation bdef9b48-d9c1-4c24-a3d0-5ba0fc3c4b19 · outbound

This paper cites FlashAttention-2: Faster Attention with Better Parallelism and Work Partitioning.

IntFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction FlashAttention-2: Faster Attention with Better Parallelism and Work Partitioning

Reference 29

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:49:02.083589Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 9fced942-a6e2-46ce-8854-88fa36451005 · outbound

This paper cites Lora: Low-rank adaptation of large language models.

IntFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction Lora: Low-rank adaptation of large language models

Reference 30

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Source-reported events for the cited work

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Observation afd0bee0-2e53-4da8-8d68-5860a44bb519 · outbound

This paper cites On layer normalization in the transformer architecture.

IntFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction On layer normalization in the transformer architecture

Reference 31

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:49:01.788602Z

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Observation 7d3ccd9b-d183-4259-9969-5f7220556393 · outbound

This paper cites GLU Variants Improve Transformer.

IntFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction GLU Variants Improve Transformer

Reference 32

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Source-reported events for the cited work

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Observation c40a7dc9-83a9-4af5-92f9-186c77d4294c · outbound

This paper cites Cogview: Mastering text-to-image generation via transformers.

IntFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction Cogview: Mastering text-to-image generation via transformers

Reference 33

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:49:01.428614Z

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Observation 997b413a-c2ee-460d-87e9-aa23fdbc4639 · outbound

This paper cites Query-Key Normalization for Transformers.

IntFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction Query-Key Normalization for Transformers

Reference 34

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:49:01.137994Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 42e553dd-e745-411d-8dea-0fa199a7a519 · outbound

This paper cites Accurate, Large Minibatch SGD: Training ImageNet in 1 Hour.

IntFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction Accurate, Large Minibatch SGD: Training ImageNet in 1 Hour

Reference 35

Resolution: unresolved; no resolver link, observed 2026-08-06T20:48:59.640718Z

Source-reported events for the cited work

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Observation 19af4f2d-6530-4b6b-9d43-e9ed7f433f26 · outbound

This paper cites Delving deep into rectifiers: Surpassing human-level performance on imagenet classification.

IntFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction Delving deep into rectifiers: Surpassing human-level performance on imagenet classification

Reference 36

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:49:00.807218Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 7d881fb0-c951-4302-bdd0-d2f6a15bfde3 · outbound

This paper cites Efficient backprop.

IntFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction Efficient backprop

Reference 37

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:49:00.582637Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 0761cb54-ff2d-4988-8ff9-4f89c1dcfaec · outbound

This paper cites Scalable diffusion models with transformers.

IntFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction Scalable diffusion models with transformers

Reference 38

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:49:00.298170Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Pith citing papers

No inbound Pith citation observations are available.