Paper Citation Record · LEDGER

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties

As of 14 August 2026, this Paper Citation Record lists 71 of 71 outbound references and 2 inbound Pith citation observations for arXiv:2508.07427.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2508.07427 v1

Coverage vector

measured 71 of 71 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-05T22:10:17.636806Z

measured 73 of 73 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-13T06:32:02.005865+00:00

measured 2 of 2 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links, observed 2026-08-04T05:24:17.994518Z

measured 1 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: arxiv_reference, observed 2026-08-05T02:28:24.338817Z

Reference resolution

71 of 71 outbound references displayed

verified exact0
verified fuzzy66
unresolved4
parse uncertain0
malformed identifier1
metadata mismatch0

External citation measurements

0
arxiv_reference, observed 2026-08-05T02:28:24.338817Z

Outbound references

Observation 909eb554-3b85-48b2-915a-d3f1d99856ff · outbound

This paper cites Gene ontology: tool for the uniﬁcation of biology.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties Gene ontology: tool for the uniﬁcation of biology

Reference 1

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T22:10:20.077266Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation e882f176-ad36-4b29-bb65-fe2122003d70 · outbound

This paper cites Bartel and Chang-Zheng Chen.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties Bartel and Chang-Zheng Chen

Reference 2

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T22:10:20.045139Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 58284449-29b4-4a43-b6a6-f0c7c95bb34b · outbound

This paper cites Boerneke et al.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties Boerneke et al

Reference 3

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T22:10:19.982268Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 650305f5-318a-4b4c-b5da-17454223cfb4 · outbound

This paper cites Translating embeddings for modeling multi-relational data.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties Translating embeddings for modeling multi-relational data

Reference 4

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T22:10:19.954595Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 330ef74b-00e5-4cdf-8ed9-d8d203fe5ed1 · outbound

This paper cites UniProtKB/Swiss-Prot, the Manually Annotated Section of the UniProt KnowledgeBase: How to Use the Entry View , page 23–54.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties UniProtKB/Swiss-Prot, the Manually Annotated Section of the UniProt KnowledgeBase: How to Use the Entry View , page 23–54

Reference 5

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T22:10:19.929240Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation fd313a78-00b1-4769-a138-3b63eab6549d · outbound

This paper cites Callahan et al.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties Callahan et al

Reference 6

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T22:10:19.898939Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 65a50ae7-7eec-4b27-93df-89c9c0e960e7 · outbound

This paper cites Callahan et al.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties Callahan et al

Reference 7

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T22:10:19.854898Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 2fe62159-35f4-46a5-a0c5-596449044591 · outbound

This paper cites Grape for fast and scalable graph processing and random-walk-based embedding.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties Grape for fast and scalable graph processing and random-walk-based embedding

Reference 8

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T22:10:19.824484Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 6ec63817-f3df-4313-be70-116374181634 · outbound

This paper cites KG-Hub—building and exchanging biological knowledge graphs.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties KG-Hub—building and exchanging biological knowledge graphs

Reference 9

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T22:10:19.783028Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 03f5869b-687c-49fa-ae8c-adadb04e5492 · outbound

This paper cites An ontology-based knowledge graph for representing interactions involving rna molecul es.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties An ontology-based knowledge graph for representing interactions involving rna molecul es

Reference 10

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T22:10:19.745775Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation d009371f-fb7a-4482-8342-c1eb0ab59dc4 · outbound

This paper cites Cech and Joan A.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties Cech and Joan A

Reference 11

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T22:10:19.719779Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 009a394c-3087-4a8c-8eb9-872d4c2926b4 · outbound

This paper cites Origins and evolving functionalities of tRNA - derived small RNAs.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties Origins and evolving functionalities of tRNA - derived small RNAs

Reference 12

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T22:10:19.686780Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 46210d51-cf2a-4fc1-a2ee-aee393e53d4f · outbound

This paper cites Tuning RNA folding and function through rational design of junction topology.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties Tuning RNA folding and function through rational design of junction topology

Reference 13

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T22:10:19.654479Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 57176260-f840-44e7-848d-dc122eb65c4f · outbound

This paper cites The limitless future of rna therapeutics.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties The limitless future of rna therapeutics

Reference 14

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T22:10:19.619105Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 9915194a-c958-42ec-b0b2-b41520614ebd · outbound

This paper cites Comparative Toxicogenomics Database (CTD): update 2023.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties Comparative Toxicogenomics Database (CTD): update 2023

Reference 15

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T22:10:19.572100Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation f062bfba-7930-4e3b-9b9c-e3f04c584c2c · outbound

This paper cites BioBLP: a modular framework for learning on multimodal biomedical knowledge graphs.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties BioBLP: a modular framework for learning on multimodal biomedical knowledge graphs

Reference 16

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T22:10:19.530275Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 8d3484ab-b65c-4978-9f75-39170a02380c · outbound

This paper cites Degtyarenko et al.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties Degtyarenko et al

Reference 17

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T22:10:19.493964Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 97a21da8-7053-46c7-8ef5-a0ba752ea122 · outbound

This paper cites metapath2vec: Scalable Representati on Learning for Heterogeneous Networks.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties metapath2vec: Scalable Representati on Learning for Heterogeneous Networks

Reference 18

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T22:10:19.457408Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 548adbe1-074f-48db-9a32-4dd11b6b4d84 · outbound

This paper cites Ensembl 2025.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties Ensembl 2025

Reference 19

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T22:10:19.417105Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 3300d743-c353-46c4-be19-661c64beee6c · outbound

This paper cites The sequence ontology: a tool for the uniﬁcation of genome annotations.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties The sequence ontology: a tool for the uniﬁcation of genome annotations

Reference 20

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T22:10:19.368479Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation bb3ba021-9af3-47c2-a9bc-8388454cf06b · outbound

This paper cites Large scale homophily analysis in twitter using a twixonomy.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties Large scale homophily analysis in twitter using a twixonomy

Reference 21

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T22:10:19.338728Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation cd692205-3bef-4503-91fc-99cf2a28e8f3 · outbound

This paper cites Eﬃcient Pruning of Large Knowledge Graphs.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties Eﬃcient Pruning of Large Knowledge Graphs

Reference 22

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T22:10:19.308276Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 638d6765-feb4-486f-a92d-2da4befb361f · outbound

This paper cites Formal semantics of the language Cypher, 2018.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties Formal semantics of the language Cypher, 2018

Reference 23

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T22:10:19.284092Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation c6efbea6-1dc8-4db2-966a-0be62cdd00f3 · outbound

This paper cites circBase: a database for circular RN As.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties circBase: a database for circular RN As

Reference 24

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T22:10:19.256594Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 1e7576cf-30c4-40c4-a3d8-6c5ee919acca · outbound

This paper cites Node2vec: Scalable feature learning for networks.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties Node2vec: Scalable feature learning for networks

Reference 25

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T22:10:19.218466Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 14f010b1-872a-4613-bcfb-22f8535f72a4 · outbound

This paper cites an unresolved cited work.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties Unresolved cited work

Reference 26

Resolution: unresolved; raw_fallback, observed 2026-08-05T22:10:19.166708Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation f672691f-ef52-438a-987b-18dd4fb836ec · outbound

This paper cites Vo: Vaccine ontology.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties Vo: Vaccine ontology

Reference 27

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T22:10:19.127230Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 29641997-58e7-4a98-ba7e-73eb57446c7c · outbound

This paper cites Higgins and Paul M.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties Higgins and Paul M

Reference 28

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T22:10:19.094817Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation c83042da-e6cc-44ae-adb1-444f43cb5ff8 · outbound

This paper cites an unresolved cited work.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties Unresolved cited work

Reference 29

Resolution: unresolved; raw_fallback, observed 2026-08-05T22:10:19.054083Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 3ac0c02a-37da-4a9d-a748-bf8a0b2c89b8 · outbound

This paper cites The Non-Coding RNA Ontology (NCRO): a comprehensive resource for the uniﬁcation of non-coding RNA biology.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties The Non-Coding RNA Ontology (NCRO): a comprehensive resource for the uniﬁcation of non-coding RNA biology

Reference 30

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T22:10:19.020300Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation eff07f91-706b-45a5-869a-1f55d5ae3a80 · outbound

This paper cites Human MicroRNA Targets.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties Human MicroRNA Targets

Reference 31

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T22:10:18.984810Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 3d8ae74e-c567-4581-b224-2bc23d0d8fb5 · outbound

This paper cites Rfam 14: expanded coverage of metagenomic, viral and microrna families.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties Rfam 14: expanded coverage of metagenomic, viral and microrna families

Reference 32

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T22:10:18.945899Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation e683a4a1-972f-4b1d-a3fb-5af4b4d9a531 · outbound

This paper cites Rnainter v4.0: Rna interactome repository with redeﬁned conﬁdence scoring system and improved accessibility.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties Rnainter v4.0: Rna interactome repository with redeﬁned conﬁdence scoring system and improved accessibility

Reference 33

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T22:10:18.913562Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation cb6e7049-7855-45e8-a471-8dea2a046bba · outbound

This paper cites A Semi-Supervised Method to Learn and Construct Taxonomies Using the Web.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties A Semi-Supervised Method to Learn and Construct Taxonomies Using the Web

Reference 34

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T22:10:18.871734Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 4b953bff-370f-4fa3-aec4-91025ff09b8e · outbound

This paper cites Kruger and M.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties Kruger and M

Reference 35

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T22:10:18.838552Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 59f6b117-7cba-49e6-97eb-02cde4860d43 · outbound

This paper cites ClinVar: updates to support classiﬁcations of both germline and somatic variants.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties ClinVar: updates to support classiﬁcations of both germline and somatic variants

Reference 36

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T22:10:18.814770Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 38c4cb07-82a3-4c52-ab24-dd5cdaaeb4c5 · outbound

This paper cites BioBERT: a pre-trained biomedical language representation model for biomedical text mining.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties BioBERT: a pre-trained biomedical language representation model for biomedical text mining

Reference 37

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T22:10:18.777263Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation fce63b43-87b5-4d8b-9688-97c29f0d45d9 · outbound

This paper cites Leontis et al.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties Leontis et al

Reference 38

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T22:10:18.743282Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 105e1fc1-5e50-45df-a4a3-6e32650d2f1f · outbound

This paper cites starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein–RNA interaction networks from large-scale CLIP-Seq data.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein–RNA interaction networks from large-scale CLIP-Seq data

Reference 39

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T22:10:18.713526Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 5c03f299-808c-4229-aed1-df008c33d6aa · outbound

This paper cites The genotype-tissue expression (gt ex) project.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties The genotype-tissue expression (gt ex) project

Reference 40

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T22:10:18.690317Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 2891a23e-d2db-4ad4-8020-d55774782f2f · outbound

This paper cites The Reactome Pathway Knowledgebase 2024.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties The Reactome Pathway Knowledgebase 2024

Reference 41

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T22:10:18.661564Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 6acf2221-3285-40d4-92aa-77e9a9ce6bb0 · outbound

This paper cites oborel/obo-relations: 2023-08-18 release.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties oborel/obo-relations: 2023-08-18 release

Reference 42

Resolution: malformed identifier; no resolver link, observed 2026-08-05T22:10:17.380394Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation db04b29a-f605-409c-a62b-1a7fd21f82e5 · outbound

This paper cites Uberon, an integrative mult i- species anatomy ontology.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties Uberon, an integrative mult i- species anatomy ontology

Reference 43

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T22:10:18.633509Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation f279df07-722b-47c6-92da-5bde33eb09f1 · outbound

This paper cites an unresolved cited work.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties Unresolved cited work

Reference 44

Resolution: unresolved; raw_fallback, observed 2026-08-05T22:10:18.598196Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation d2310ae5-53a5-4677-9537-b24c6ec85c29 · outbound

This paper cites Needleman and Christian D.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties Needleman and Christian D

Reference 45

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T22:10:18.561392Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation a8d6dedc-d8f0-48c6-91bf-f8d6bf9efc96 · outbound

This paper cites Neo4j - the world’s leading graph database.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties Neo4j - the world’s leading graph database

Reference 46

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T22:10:18.532903Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 38c0cb02-2a5a-4cd4-bd69-3f06e4f53cce · outbound

This paper cites Paraskevopoulou et al.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties Paraskevopoulou et al

Reference 47

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T22:10:18.498561Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 0dbf49f0-4990-4175-920a-cc17f21f8f90 · outbound

This paper cites The pathway ontology – updates and applications.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties The pathway ontology – updates and applications

Reference 48

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T22:10:18.459019Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 7cf39dab-b16b-4e9b-a262-e42cb2de0116 · outbound

This paper cites DisGeNET: a comprehensive platform integrating information on human disease-associated gene s and variants.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties DisGeNET: a comprehensive platform integrating information on human disease-associated gene s and variants

Reference 49

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T22:10:18.424908Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 143a1bad-4925-4399-8429-8fb60e6de782 · outbound

This paper cites PTEN ceRNA networks in human cancer.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties PTEN ceRNA networks in human cancer

Reference 50

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T22:10:18.384547Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation b699ef16-83b0-4fc2-98f6-52c64c408294 · outbound

This paper cites Robinson et al.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties Robinson et al

Reference 51

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T22:10:18.347730Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 22fae944-da31-489b-a310-183013c3fa63 · outbound

This paper cites PhenomiR: a knowledgebase for microRNA expression in diseases and biological processes.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties PhenomiR: a knowledgebase for microRNA expression in diseases and biological processes

Reference 52

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T22:10:18.299836Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation d8be5905-b2a0-4f43-b4b7-ab685c981b39 · outbound

This paper cites Salzberg.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties Salzberg

Reference 53

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T22:10:18.266073Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 2ce5cab6-1dd2-4958-b094-61fc3d2ec757 · outbound

This paper cites Clo: The cell line ontology.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties Clo: The cell line ontology

Reference 54

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T22:10:18.237626Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation b9d9d122-734e-4d3c-b836-1acae7161022 · outbound

This paper cites Genenames.org: the HGNC resources in 2023.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties Genenames.org: the HGNC resources in 2023

Reference 55

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T22:10:18.204809Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 8404c5d3-5399-4822-afd1-7517aa9ab167 · outbound

This paper cites an unresolved cited work.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties Unresolved cited work

Reference 56

Resolution: unresolved; raw_fallback, observed 2026-08-05T22:10:18.165163Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 64b3c7e2-821d-4121-817a-6262abc6a713 · outbound

This paper cites Nci thesaurus: A semantic model integrating cancer-related clinical and molecular information.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties Nci thesaurus: A semantic model integrating cancer-related clinical and molecular information

Reference 57

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T22:10:18.140600Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 013f8506-b188-4e54-8821-f7ae4e38d887 · outbound

This paper cites COSMIC: a curated database of somatic variants and clinical data for cancer.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties COSMIC: a curated database of somatic variants and clinical data for cancer

Reference 58

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T22:10:18.117120Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 91549692-9b3c-4254-9bd3-88991370062a · outbound

This paper cites Toward Distributed Use of Large- Scale Ontologies.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties Toward Distributed Use of Large- Scale Ontologies

Reference 59

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T22:10:18.089365Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 56f39f8e-ee14-4742-a734-533559acc20f · outbound

This paper cites Rnacentral 2021: secondary structure integration, improved sequence search and new member databases.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties Rnacentral 2021: secondary structure integration, improved sequence search and new member databases

Reference 60

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T22:10:18.058946Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 823cd2b5-b3a9-4797-b8e2-0efd111128aa · outbound

This paper cites The STRING database in 2023: protein–protein association networks and functiona l enrichment analyses for any sequenced genome of interest.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties The STRING database in 2023: protein–protein association networks and functiona l enrichment analyses for any sequenced genome of interest

Reference 61

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T22:10:18.030154Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 19ff02d2-0b8e-49a0-9cad-ffcb484c6fb5 · outbound

This paper cites LINE: Large-scale Information Network Embedding.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties LINE: Large-scale Information Network Embedding

Reference 62

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T22:10:17.995021Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 6ed673e5-e9c1-47a7-9f31-1c2374702f33 · outbound

This paper cites Depth-ﬁrst search and linear graph algorithms.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties Depth-ﬁrst search and linear graph algorithms

Reference 63

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T22:10:17.966920Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 9158673d-5bbe-4b22-9e9b-af42827aecb8 · outbound

This paper cites Thul and Cecilia Lindskog.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties Thul and Cecilia Lindskog

Reference 64

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T22:10:17.943220Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 6718562a-abc5-4e1b-b05c-81ef48cdb915 · outbound

This paper cites RNA Knowledge-Graph analysis through homogeneous embedding methods.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties RNA Knowledge-Graph analysis through homogeneous embedding methods

Reference 65

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T22:10:17.916433Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 8ce49b0d-f0e5-4454-b6be-28181a007c2f · outbound

This paper cites Knowledge graph completion via complex tensor factorization.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties Knowledge graph completion via complex tensor factorization

Reference 66

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T22:10:17.892781Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 07bb9488-e2fe-4bc0-99f7-3c8b0a9e1ebc · outbound

This paper cites Mondo: Unifying diseases for the world, by the world.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties Mondo: Unifying diseases for the world, by the world

Reference 67

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T22:10:17.863245Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation fcf565a8-8049-4a51-867a-c039ff7cba4b · outbound

This paper cites Network tuned multiple rank aggregation and applications to gene ranking.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties Network tuned multiple rank aggregation and applications to gene ranking

Reference 68

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T22:10:17.843908Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 3f399c70-3c4a-451f-9863-f45a9769a53a · outbound

This paper cites The GeneMANIA prediction server: biological network integration for gene prioritiz ation and predicting gene function.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties The GeneMANIA prediction server: biological network integration for gene prioritiz ation and predicting gene function

Reference 69

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T22:10:17.800002Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 046eebfa-1170-48b5-b08c-683199e38b4d · outbound

This paper cites DNABERT-2: Eﬃcient Foundation Model and Benchmark For Multi-Species Genome, 2023.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties DNABERT-2: Eﬃcient Foundation Model and Benchmark For Multi-Species Genome, 2023

Reference 70

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T22:10:17.753900Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 62ba9410-d6d8-453e-9237-ba4c8820f090 · outbound

This paper cites query":.

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties query":

Reference 71

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T22:10:17.729535Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Pith citing papers

Observation 68d29656-e357-4ad9-8ca6-e84f432b07a7 · inbound

Unifying biomedical knowledge in a modern multimodal graph cites this paper.

Unifying biomedical knowledge in a modern multimodal graph RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties

Reference 52

Resolution: verified exact; arxiv_id, observed 2026-07-16T01:22:26.471866Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation a9d348ca-6077-4dd4-917c-c1f5234dd8bb · inbound

Unifying biomedical knowledge in a modern multimodal graph cites this paper.

Unifying biomedical knowledge in a modern multimodal graph RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties

Reference 50

Resolution: unresolved; no resolver link, observed 2026-08-04T05:24:17.994518Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.