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Bayesian Model Parameter Learning in Linear Inverse Problems: Application in EEG Focal Source Imaging
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Inverse problems can be described as limited-data problems in which the signal of interest cannot be observed directly. A physics-based forward model that relates the signal with the observations is typically needed. Unfortunately, unknown model parameters and imperfect forward models can undermine the signal recovery. Even though supervised machine learning offers promising avenues to improve the robustness of the solutions, we have to rely on model-based learning when there is no access to ground truth for the training. Here, we studied a linear inverse problem that included an unknown non-linear model parameter and utilized a Bayesian model-based learning approach that allowed signal recovery and subsequently estimation of the model parameter. This approach, called Bayesian Approximation Error approach, employed a simplified model of the physics of the problem augmented with an approximation error term that compensated for the simplification. An error subspace was spanned with the help of the eigenvectors of the approximation error covariance matrix which allowed, alongside the primary signal, simultaneous estimation of the induced error. The estimated error and signal were then used to determine the unknown model parameter. For the model parameter estimation, we tested different approaches: a conditional Gaussian regression, an iterative (model-based) optimization, and a Gaussian process that was modeled with the help of physics-informed learning. In addition, alternating optimization was used as a reference method. As an example application, we focused on the problem of reconstructing brain activity from EEG recordings under the condition that the electrical conductivity of the patient's skull was unknown in the model. Our results demonstrated clear improvements in EEG source localization accuracy and provided feasible estimates for the unknown model parameter, skull conductivity.
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Works this paper leans on
-
[1]
Kirsch A 1996 An introduction to the mathematical theory of inverse problems (NY, USA: Springer- Verlag New York.) ISBN 0-387-94530-X
1996
-
[2]
Tikhonov A 1943 Doklady Akademii nauk SSSR 39 195–198
1943
-
[3]
Plato R and Vainikko G 1990 Numerische Mathematik 57(1) 63–79
1990
-
[4]
Engl H W, Hanke M and Neubauer A 1996 Regularization of Inverse Problems (Kluwer Academic Publishers)
1996
-
[5]
Hansen P C 1998 Rank-deficient and Discrete Ill-posed Problems: Numerical Aspects of Linear Inversion (Philadelphia, PA, USA: Society for Industrial and Applied Mathematics) ISBN 0- 89871-403-6
1998
-
[6]
Benning M and Burger M 2018 Acta Numerica 27 1–111 ISSN 1474-0508
2018
-
[7]
Afkham B M, Chung J and Chung M 2021 Inverse Problems 37 105017 ISSN 1361-6420
2021
-
[8]
Mattsson P, Zachariah D and Stoica P 2023 IEEE Transactions on Signal Processing 71 1175–1183 ISSN 1941-0476
2023
Show all 78 references
-
[9]
Burger M and Kabri S 2013 arXiv (Preprint 2312.09845)
2013 arXiv
-
[10]
Campisi P and Egiazarian K (eds) 2007 Blind Image Deconvolution: Theory and Applications (Boca Raton, FL: CRC Press) ISBN 9780849390725
2007
-
[11]
Ni Y and Strohmer T 2024 Auto-calibration and biconvex compressive sensing with applications to parallel mri
2024
-
[12]
Ahmed A, Recht B and Romberg J 2014 IEEE Transactions on Information Theory 60 1711–1732 ISSN 1557-9654
2014
-
[13]
Ling S and Strohmer T 2015 Inverse Problems 31 115002 ISSN 1361-6420
2015
-
[14]
Bolte J, Combettes P L and Pesquet J C 2010 Alternating proximal algorithm for blind image recovery 2010 IEEE International Conference on Image Processing (IEEE)
2010
-
[15]
Li X, Ling S, Strohmer T and Wei K 2019 Applied and Computational Harmonic Analysis 47 893–934 ISSN 1063-5203
2019
-
[16]
Adler J and ¨Oktem O 2017 Inverse Problems 33 124007 ISSN 1361-6420
2017
-
[17]
Adler J and Oktem O 2018 IEEE Transactions on Medical Imaging 37 1322–1332 ISSN 1558-254X
2018
-
[18]
Jin K H, McCann M T, Froustey E and Unser M 2017 IEEE Transactions on Image Processing 26 4509–4522 ISSN 1941-0042
2017
-
[19]
Arridge S, Maass P, ¨Oktem O and Sch¨ onlieb C B 2019Acta Numerica 28 1–174 ISSN 1474-0508
-
[20]
Lunz S, Hauptmann A, Tarvainen T, Sch¨ onlieb C B and Arridge S 2021SIAM Journal on Imaging Sciences 14 92–127 ISSN 1936-4954
1936
-
[21]
Arridge S, Hauptmann A and Korolev Y 2023 Inverse problems with learned forward operators
2023
-
[22]
LeCun Y, Bengio Y and Hinton G 2015 Nature 521 436–444 ISSN 1476-4687
2015
-
[23]
Murphy K P 2022 Probabilistic Machine Learning (MIT Press Ltd) ISBN 0262046822 URL https: //www.ebook.de/de/product/41791478/kevin p murphy probabilistic machine learning.html
2022
-
[24]
Kaipio J P and Somersalo E 2004 Statistical and Computational Inverse Problems Applied Mathematical Series (Springer)
2004
-
[25]
Kaipio J and Somersalo E 2007 J. Comput. Appl. Math. 198 493–504
2007
-
[26]
Vanrumste B, Hoey G V, de Walle R V, D’Have M, Lemahieu I and Boon P 2000 Med. Biol. Eng. Comput. 38 528–534
2000
-
[27]
Brain Mapp
Dannhauer M, Lanfer B, Wolters C and Kn¨ osche T 2011 Hum. Brain Mapp. 32 1383–1399
2011
-
[28]
Lew S, Sliva D D, Choe M, Grant P E, Okada Y, Wolters C H and H¨ am¨ al¨ ainen M S 2013 NeuroImage 76 282–293
2013
-
[29]
Ollikainen J O, Vauhkonen M, Karjalainen P A and Kaipio J P 1999 Med. Eng. Phys. 21(3) 143–154
1999
-
[30]
27(1) 95–111
Montes-Restrepo V, van Mierlo P, Strobbe G, Staelens S, Vanderberghe S and Hallez H 2014 Brain Topogr. 27(1) 95–111
2014
-
[31]
Rimpilainen V, Koulouri A, Lucka F, Kaipio J P and Wolters C H 2019 NeuroImage 188 252–260 35
2019
-
[32]
Vorwerk J, Aydin U, Wolters C H and Butson C R 2019 Frontiers in Neuroscience 13 ISSN 1662-453X
2019
-
[33]
Lew S, Wolters C H, Anwander A, Makeig S and MacLeod R S 2009 Human Brain Mapping 30 2862–2878
2009
-
[34]
Papageorgakis C 2017 Patient specific conductivity models: characterization of the skull bones. Ph.D. thesis
2017
-
[36]
Huang M X, Song T, Jr D J H, Podgorny I, Jousmaki V, Cui L, Harrington D L, Dale A M, Lee R R, Elman J and Halgren E 2007 NeuroImage 37 731–748
2007
-
[37]
Aydin U, Vorwerk J, K¨ upper P, Heers M, Kugel H, Galka A, Hamid L, Wellmer J, Kellinghaus C, Rampp S and Wolters C H 2014 PLoS ONE 9(3) e93154
2014
-
[38]
Antonakakis M, Schrader S, Aydin U, Khan A, Gross J, Zervakis M, Rampp S and Wolters C H 2020 NeuroImage 223 117353 ISSN 1053-8119
2020
-
[39]
Schmidt C, Wagner S, Burger M, Rienen U v and Wolters C H 2015 Journal of Neural Engineering 12 046028 ISSN 1741-2552
2015
-
[40]
Saturnino G B, Thielscher A, Madsen K H, Kn¨ osche T R and Weise K 2019 NeuroIm- age 188 821–834 ISSN 1053-8119 URL https://www.sciencedirect.com/science/article/pii/ S1053811918322031
2019
-
[41]
McCann H and Beltrachini L 2021 Biomedical Physics & Engineering Express 7 045018 URL https://dx.doi.org/10.1088/2057-1976/ac0547
2021 doi
-
[42]
Kaipio J and Kolehmainen V 2013 Approximate marginalization over modeling errors and uncertainties in inverse problems Bayesian Theory and Applications ed Damien P, Polson N and Stephens D (Oxford University Press)
2013
-
[43]
Nissinen A, Kolehmainen V and Kaipio J P 2011 International Journal for Uncertainty Quantification 1 203–222 ISSN 2152-5080
2011
-
[44]
Koulouri A and Rimpil¨ ainen V 2020 Simultaneous skull conductivity and focal source imaging from EEG recordings with the help of bayesian uncertainty modelling 8th European Medical and Biological Engineering Conference (Springer International Publishing) pp 1019–1027
2020
-
[45]
Lipponen A, Sepp¨ anen A and Kaipio J P 2011 Meas. Sci. Technol. 22 104013
2011
-
[46]
Nissinen A, Heikkinen L M, Kolehmainen V and Kaipio J P 2009 Meas. Sci. Technol. 20 105504
2009
-
[47]
Arridge S R, Kaipio J P, Kolehmainen V, Schweiger M, Somersalo E, Tarvainen T and Vauhkonen M 2006 Inverse Problems 22(1) 175–195
2006
-
[48]
Kolehmainen V, Schweiger M, Nissil¨ a I, Tarvainen T, Arridge S R and Kaipio J P 2009 J. Opt. Soc. Am. A 26 2257–2268
2009
-
[49]
Tarvainen T, Kolehmainen V, Pulkkinen A, Vauhkonen M, Schweiger M, Arridge S R and Kaipio J P 2010 Inverse Problems 26 015005
2010
-
[50]
Koulouri A, Rimpil¨ ainen V, Brookes M and Kaipio J P 2016 Appl. Num. Math. 106 24–36
2016
-
[51]
Mozumder M, Tarvainen T, Arridge S R, Kaipio J and Kolehmainen V 2013 Biomed. Opt. Express 4 2015–2031 URL http://www.opticsinfobase.org/boe/abstract.cfm?URI=boe-4-10-2015
2013
-
[52]
org/10.1088/1361-6420/ad602e
Alexanderian A, Nicholson R and Petra N 2024 Inverse Problems 40 095001 URL https://dx.doi. org/10.1088/1361-6420/ad602e
2024 doi
-
[53]
Candiani V, Hyv¨ onen N, Kaipio J P and Kolehmainen V 2021 Inverse Problems 37 125008 URL https://dx.doi.org/10.1088/1361-6420/ac346a
2021 doi
-
[54]
Nicholson R, Petra N, Villa U and Kaipio J P 2023 Inverse Problems 39 054001 URL https: //dx.doi.org/10.1088/1361-6420/acc129
2023 doi
-
[55]
Bohrnstedt G W and Goldberger A S 1969 Journal of the American Statistical Association 64(328) 1439—-1442
1969
-
[56]
Neuroeng
Grech R, Cassar T, Muscat J, Camilleri K, Fabri S, Zervakis M, Xanthopoulos P, Sakkalis V and Vanrumste B 2008 J. Neuroeng. Rehabil. 5 25
2008
-
[57]
Michel C M and Brunet D 2019 Frontiers in Neurology 10 ISSN 1664-2295 36
2019
-
[58]
Fuchs M, Wagner M, Wischmann H A, K´’ohler T, Theissen A, Drenckhahn R and Buchner H 1998 Electroencephalogr. Clin. Neurophysiol. 107 93–111
1998
-
[59]
Rodriguez-Rivera A, Van Veen B and Wakai R 2003IEEE Transactions on Biomedical Engineering 50 137–149
-
[60]
H¨ oltershinken M B, Erdbr¨ ugger T and Wolters C H 2024 (Preprint 2409.07459)
2024 arXiv
-
[61]
Kn¨ osche T 1997The Netherlands
-
[62]
Vauhkonen M 1997 Electrical impedance tomography and prior information PhD thesis
1997
-
[63]
Puonti O, Van Leemput K, Saturnino G B, Siebner H R, Madsen K H and Thielscher A 2020 NeuroImage 219 117044 ISSN 1053-8119 URL https://www.sciencedirect.com/science/article/ pii/S1053811920305309
2020
-
[64]
Wolters C H, Grasedyck L and Hackbusch W 2004 Inverse Problems 20 1099–1116
2004
-
[65]
16 29–38
Hoekema R, Wieneke G H, van Veelen C W, van Rijen P C, Huiskamp G J, Ansems J and van Huffelen A C 2003 Brain Topogr. 16 29–38
2003
-
[66]
Homma S, Musha T, Nakajima Y, Okomoto Y, Blom S, Flink R and Hagbarth K E 1995 Neurosci. Res. 22 51–55
1995
-
[67]
Ramon C, Schimpf P H and Haueisen J 2006 Biomed. Eng. Online 5
2006
-
[68]
Badia A E and Duong T H 1998 Inverse Problems 14 883–891 ISSN 1361-6420
1998
-
[69]
K¨ ohler T, Wagner M, Fuchs M, Wischmann H A, Drenckhahn R and Theissen A 1996 Depth normalization in meg/eeg current density imaging Engineering in Medicine and Biology Society,
1996
-
[70]
Pascual-Marqui R D, Michel C M and Lehmann D 1994 Int. J. Psychophysiol. 18 49–65
1994
-
[71]
24, 5–12
Pascual-Marqui R D 2002 Methods Find Exp Clin Pharmacol. 24, 5–12
2002
-
[72]
Fuchs M, Wagner M and Wischmann H A 1999 Journal of Clinical Neurophysiology 16(3) 267–295
1999
-
[73]
Wagner M, Wischmann H A, Fuchs M, K¨ ohler T and Drenckhahn R 2000 Current Density Reconstructions Using the L1 Norm (Springer New York) pp 393–396 ISBN 9781461212607
2000
-
[74]
Palmero-Soler E, Dolan K, Hadamschek V and Tass P A 2007 Physics in Medicine and Biology 52 1783–1800 ISSN 1361-6560
2007
-
[75]
Buchner H, Knoll G, Fuchs M, Rien ´’acker A, Beckmann R, Wagner M, Silny J and Pesch J 1997 Electroencephalogr. Clin. Neurophysiol. 102 267–278
1997
-
[76]
Gramfort A, Luessi M, Larson E, Engemann D A, Strohmeier D, Brodbeck C, Parkkonen L and H¨ am¨ al¨ ainen M S 2014NeuroImage 86 446–460 ISSN 1053-8119
-
[77]
Koulouri A, Rimpil¨ ainen V, Brookes M and Kaipio J P 2018 Prior variances and depth un- biased estimators in eeg focal source imaging EMBEC & NBC 2017 (Springer) pp 33–36 URL https://doi.org/10.1007/978-981-10-5122-7 9
2018 doi
-
[78]
Calvetti D, Pascarella A, Pitolli F, Somersalo E and Vantaggi B 2018Brain Topography32 363–393 ISSN 1573-6792
-
[1996]
Proceedings of the 18th Annual International Conference of the IEEE vol 2 pp 812–813 vol.2
Bridging Disciplines for Biomedicine. Proceedings of the 18th Annual International Conference of the IEEE vol 2 pp 812–813 vol.2
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