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Paper Citation Record · LEDGER

Target search on DNA by interacting molecules: First-passage approach

As of 16 August 2026, this Paper Citation Record lists 31 of 31 outbound references and 0 inbound Pith citation observations for arXiv:1908.03597.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
1908.03597 v1

Coverage vector

measured 31 of 31 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-14T14:16:28.586517Z

measured 31 of 31 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-16T06:30:59.297886+00:00

measured 0 of 0 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: cited_works

Reference resolution

31 of 31 outbound references displayed

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External citation measurements

No source-named external measurement is stored.

Outbound references

Observation e5804195-4309-47ee-b026-5a048a692959 · outbound

This paper cites Essential cell biology.

Target search on DNA by interacting molecules: First-passage approach Essential cell biology

Reference 1

Resolution
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

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Observation db8adf5c-70ad-437e-963a-a116334765ed · outbound

This paper cites Loops in dna: an overview of experimental and theoretical ap- proaches.

Target search on DNA by interacting molecules: First-passage approach Loops in dna: an overview of experimental and theoretical ap- proaches

Reference 2

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

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Observation 5780d783-7fad-4e2a-a089-55e32aec7076 · outbound

This paper cites Generalized fa- cilitated diffusion model for dna-binding proteins with search and recognition states.

Target search on DNA by interacting molecules: First-passage approach Generalized fa- cilitated diffusion model for dna-binding proteins with search and recognition states

Reference 3

Resolution
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No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

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Observation 73184869-3694-4b8a-b87d-9538104a06da · outbound

This paper cites From first-passage times of random walks in confinement to geometry- controlled kinetics.

Target search on DNA by interacting molecules: First-passage approach From first-passage times of random walks in confinement to geometry- controlled kinetics

Reference 4

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

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Observation 98ed6314-8847-4224-808a-e4f465f7c72f · outbound

This paper cites Intermittent search strategies.

Target search on DNA by interacting molecules: First-passage approach Intermittent search strategies

Reference 5

Resolution
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

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Observation 43db749d-fef9-451c-96c0-5cac865c2adc · outbound

This paper cites Association kinetics with coupled diffusional flows: special application to the lac repressor-operator system.

Target search on DNA by interacting molecules: First-passage approach Association kinetics with coupled diffusional flows: special application to the lac repressor-operator system

Reference 6

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

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Observation 9e551fd2-49f8-4cd2-9965-eb8a62a67441 · outbound

This paper cites First-passage times for random walks in bounded domains.

Target search on DNA by interacting molecules: First-passage approach First-passage times for random walks in bounded domains

Reference 7

Resolution
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

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Observation e095ba7f-b5c9-4c1d-aeeb-081e5250cc06 · outbound

This paper cites Random walks and brownian motion: A method of computation for first-passage times and related quan- tities in confined geometries.

Target search on DNA by interacting molecules: First-passage approach Random walks and brownian motion: A method of computation for first-passage times and related quan- tities in confined geometries

Reference 8

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

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Observation 2f5b5967-ea59-45ef-8aa0-44ff3a436e57 · outbound

This paper cites Kinetics of target site localization of a protein on dna: a stochastic approach.

Target search on DNA by interacting molecules: First-passage approach Kinetics of target site localization of a protein on dna: a stochastic approach

Reference 9

Resolution
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

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Observation f3143d77-c5e0-4a38-9468-3336dd130ded · outbound

This paper cites Eukaryotic transcriptional dynamics: from single molecules to cell populations.

Target search on DNA by interacting molecules: First-passage approach Eukaryotic transcriptional dynamics: from single molecules to cell populations

Reference 10

Resolution
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

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Observation 27211164-e547-43d1-ace2-e041da35e0b6 · outbound

This paper cites First passage times for multiple par- ticles with reversible target-binding kinetics.The Journal of Chemical Physics , 147(13):134112, 2017.

Target search on DNA by interacting molecules: First-passage approach First passage times for multiple par- ticles with reversible target-binding kinetics.The Journal of Chemical Physics , 147(13):134112, 2017

Reference 11

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

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Observation b093f76e-c0b6-4b8a-ab9f-980b08b152c4 · outbound

This paper cites How do site- specific dna-binding proteins find their targets? Nucleic acids research, 32(10):3040–3052, 2004.

Target search on DNA by interacting molecules: First-passage approach How do site- specific dna-binding proteins find their targets? Nucleic acids research, 32(10):3040–3052, 2004

Reference 12

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

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Observation b5b0a497-bdef-4b49-84d8-308280a15618 · outbound

This paper cites The lac repressor displays facilitated diffusion in living cells.

Target search on DNA by interacting molecules: First-passage approach The lac repressor displays facilitated diffusion in living cells

Reference 13

Resolution
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

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Observation 242ec32a-7218-4fd0-9d85-ec7a75056083 · outbound

This paper cites Tuned polymerization of the transcription factor yan limits off-dna sequestration to confer context-specific repression.

Target search on DNA by interacting molecules: First-passage approach Tuned polymerization of the transcription factor yan limits off-dna sequestration to confer context-specific repression

Reference 14

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

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Observation 4f8c1270-abb9-4a0c-8bfe-fdc7002e6a90 · outbound

This paper cites How pro- teins search for their specific sites on dna: the role of dna conformation.

Target search on DNA by interacting molecules: First-passage approach How pro- teins search for their specific sites on dna: the role of dna conformation

Reference 15

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

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Observation 638a9982-7cc3-43a3-9b31-00574d9bcf77 · outbound

This paper cites Sequence heterogene- ity and the dynamics of molecular motors.

Target search on DNA by interacting molecules: First-passage approach Sequence heterogene- ity and the dynamics of molecular motors

Reference 16

Resolution
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

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Observation 02a7e888-450d-4db2-a7ec-1f9f6a5121ef · outbound

This paper cites Physics of protein–dna interac- tions: mechanisms of facilitated target search.

Target search on DNA by interacting molecules: First-passage approach Physics of protein–dna interac- tions: mechanisms of facilitated target search

Reference 17

Resolution
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

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Observation dca8c463-7c49-454d-9c2a-8101981f749a · outbound

This paper cites Motor proteins and molecular motors.

Target search on DNA by interacting molecules: First-passage approach Motor proteins and molecular motors

Reference 18

Resolution
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

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Observation af8c3777-32ce-4a2c-8f3f-d0633faed725 · outbound

This paper cites First passage time distribu- tion of multiple impatient particles with reversible bind- ing.

Target search on DNA by interacting molecules: First-passage approach First passage time distribu- tion of multiple impatient particles with reversible bind- ing

Reference 19

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

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Observation b9ef3ad8-b1ec-49ae-b834-c180517b6a55 · outbound

This paper cites Disentangling the many layers of eukaryotic tran- scriptional regulation.

Target search on DNA by interacting molecules: First-passage approach Disentangling the many layers of eukaryotic tran- scriptional regulation

Reference 20

Resolution
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

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Observation 1c351dec-98cb-49ed-ba6d-14a7e7df2211 · outbound

This paper cites Molec- ular cell biology.

Target search on DNA by interacting molecules: First-passage approach Molec- ular cell biology

Reference 21

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

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Observation c6a5ae7e-d438-4b12-ae05-7a2547831f1b · outbound

This paper cites First- passage phenomena and their applications.

Target search on DNA by interacting molecules: First-passage approach First- passage phenomena and their applications

Reference 22

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

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Observation 06f7ea01-b669-4315-a7d2-18f18ca4a797 · outbound

This paper cites How a protein searches for its site on dna: the mechanism of facilitated diffusion.

Target search on DNA by interacting molecules: First-passage approach How a protein searches for its site on dna: the mechanism of facilitated diffusion

Reference 23

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

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Observation 413057de-9a6a-47fe-8607-0b1d2a1225fe · outbound

This paper cites Physical biology of the cell.

Target search on DNA by interacting molecules: First-passage approach Physical biology of the cell

Reference 24

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

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Observation 23d0b46e-79b9-4308-93ec-b7cc93ae92d0 · outbound

This paper cites A guide to first-passage processes.

Target search on DNA by interacting molecules: First-passage approach A guide to first-passage processes

Reference 25

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

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Observation 79e512d2-bf14-47f0-af10-f61c8c03cc59 · outbound

This paper cites The lac represser-operator interaction: Iii.

Target search on DNA by interacting molecules: First-passage approach The lac represser-operator interaction: Iii

Reference 26

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

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Observation c3cad392-fa27-467b-9d6c-4da3cc52fc8c · outbound

This paper cites Classes of fast and specific search mechanisms for pro- teins on dna.

Target search on DNA by interacting molecules: First-passage approach Classes of fast and specific search mechanisms for pro- teins on dna

Reference 27

Resolution
verified fuzzy
raw_fallback, observed 2026-08-14T14:16:28.748287Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

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Observation 21c5f382-df59-4ae9-8acb-c8728881b191 · outbound

This paper cites Molecular search with conformational change: One-dimensional discrete- state stochastic model.

Target search on DNA by interacting molecules: First-passage approach Molecular search with conformational change: One-dimensional discrete- state stochastic model

Reference 28

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

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Observation 34b5b2f5-ad2f-47d5-956e-ba4051e495e9 · outbound

This paper cites Mechanisms of protein search for targets on dna: theoretical insights.

Target search on DNA by interacting molecules: First-passage approach Mechanisms of protein search for targets on dna: theoretical insights

Reference 29

Resolution
verified fuzzy
raw_fallback, observed 2026-08-14T14:16:28.700722Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

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Observation 6705eb84-e5a2-42a4-adca-0c833b9bf854 · outbound

This paper cites Protein–dna bind- ing: complexities and multi-protein codes.

Target search on DNA by interacting molecules: First-passage approach Protein–dna bind- ing: complexities and multi-protein codes

Reference 30

Resolution
verified fuzzy
raw_fallback, observed 2026-08-14T14:16:28.675373Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

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Observation b45efb1c-4d75-4837-9513-be432bafd1a6 · outbound

This paper cites Speed- selectivity paradox in the protein search for targets on dna: is it real or not? The Journal of Physical Chem- istry B, 117(42):12695–12701, 2013.

Target search on DNA by interacting molecules: First-passage approach Speed- selectivity paradox in the protein search for targets on dna: is it real or not? The Journal of Physical Chem- istry B, 117(42):12695–12701, 2013

Reference 31

Resolution
verified fuzzy
raw_fallback, observed 2026-08-14T14:16:28.646268Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

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Pith citing papers

No inbound Pith citation observations are available.