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Paper Citation Record · LEDGER

Group Ligands Docking to Protein Pockets

As of 21 August 2026, this Paper Citation Record lists 15 of 15 outbound references and 1 inbound Pith citation observation for arXiv:2501.15055.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2501.15055 v1

Coverage vector

measured 15 of 15 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-10T14:45:02.886886Z

measured 16 of 16 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-21T06:32:19.484+00:00

measured 1 of 1 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links, observed 2026-08-07T13:35:57.653804Z

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: pith, observed 2026-08-07T13:40:18.005926Z

Reference resolution

15 of 15 outbound references displayed

  • verified exact0
  • verified fuzzy7
  • unresolved7
  • parse uncertain0
  • malformed identifier1
  • metadata mismatch0

External citation measurements

No source-named external measurement is stored.

Outbound references

Observation e0bd9ac3-424c-4028-b8c3-7b02b7222ffc · outbound

This paper cites By setting the maximum ligands in each group as 5, we have 8237 datapoints with 51.3 % datapoints with more than one ligand.

Group Ligands Docking to Protein Pockets By setting the maximum ligands in each group as 5, we have 8237 datapoints with 51.3 % datapoints with more than one ligand

Reference 1

Resolution
verified fuzzy
raw_fallback, observed 2026-08-10T14:45:03.032220Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-10T14:45:02.878990Z digest=sha256:f9fee0079e2c1cd8bef8873933dafbcbb802f07c59702b48aa6ab3f781aa0524

Observation 99c6aebf-171d-40fd-b286-7e0bd45f3b1f · outbound

This paper cites e3nn: Euclidean Neural Networks.

Group Ligands Docking to Protein Pockets e3nn: Euclidean Neural Networks

Reference 4

Resolution
unresolved
no resolver link, observed 2026-08-10T14:45:02.837712Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-10T14:45:02.837712Z digest=sha256:4d881b23094df7bce98aecd67f3c9e87509dc7fca77af3cc14d67421ac8da609

Observation 5a1dc94b-f7e1-4f32-ace8-4c2213140364 · outbound

This paper cites Highly accurate protein structure prediction with alphafold.

Group Ligands Docking to Protein Pockets Highly accurate protein structure prediction with alphafold

Reference 5

Resolution
verified fuzzy
raw_fallback, observed 2026-08-10T14:45:03.099829Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-10T14:45:02.842427Z digest=sha256:124a3711d4a74d183b6b1e505864b8c108f69e172d368a3b75740730165540df

Observation 8fc074f1-d63d-4e98-a914-8c8455818798 · outbound

This paper cites Decoupled Weight Decay Regularization.

Group Ligands Docking to Protein Pockets Decoupled Weight Decay Regularization

Reference 7

Resolution
unresolved
no resolver link, observed 2026-08-10T14:45:02.851471Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-10T14:45:02.851471Z digest=sha256:5c51ed389e0260518a1e9e5aa457dffa084855462a168d135b0fce0e9085652b

Observation f19af23a-b261-4397-b62a-a17ee0637301 · outbound

This paper cites an unresolved cited work.

Group Ligands Docking to Protein Pockets Unresolved cited work

Reference 14

Resolution
malformed identifier
raw_fallback, observed 2026-08-10T14:45:03.017953Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-10T14:45:02.883014Z digest=sha256:44ddfe585794ec9dac855ed06e27c442b21f4bc15f749e541e138b226e63d76e

Observation 68061be3-fd8e-44a5-b90e-94b82847b37f · outbound

This paper cites Augmentation with ligands from the training set also improves the model’s performance in terms of centroid distances.

Group Ligands Docking to Protein Pockets Augmentation with ligands from the training set also improves the model’s performance in terms of centroid distances

Reference 15

Resolution
verified fuzzy
raw_fallback, observed 2026-08-10T14:45:03.004007Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-10T14:45:02.886886Z digest=sha256:461d03ac73cced58dc81320f6dfa45df3a94d3d543b332c6f277a4bd63d04a1f

Observation 4e8d378f-d101-4b79-9995-72e166182938 · outbound

This paper cites Lessons learned in empirical scoring with smina from the csar 2011 benchmarking exercise.

Group Ligands Docking to Protein Pockets Lessons learned in empirical scoring with smina from the csar 2011 benchmarking exercise

Reference 1976

Resolution
verified fuzzy
raw_fallback, observed 2026-08-10T14:45:03.086684Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-10T14:45:02.846922Z digest=sha256:901a915763a0404207d60a5a8a437621fca742da4fd2873b248b938c2ea1da97

Observation d407fbb8-90d3-4019-8dae-a02a2cc1fa1f · outbound

This paper cites Multiple view semantic segmentation for street view images.

Group Ligands Docking to Protein Pockets Multiple view semantic segmentation for street view images

Reference 1999

Resolution
verified fuzzy
raw_fallback, observed 2026-08-10T14:45:03.058388Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-10T14:45:02.864984Z digest=sha256:4e71113e340030d9704063b186814c2585c6511067d6591abcf135d03dbe92eb

Observation d6d8e86c-22ca-43d2-97ce-9369e68005a7 · outbound

This paper cites Molecular docking using shape descriptors.

Group Ligands Docking to Protein Pockets Molecular docking using shape descriptors

Reference 2002

Resolution
verified fuzzy
raw_fallback, observed 2026-08-10T14:45:03.073117Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-10T14:45:02.855950Z digest=sha256:ca7f038e40933403a67bc547058c51092a196f0d575aae6dc1d0f9dd7d3bc607

Observation 6a2d48c7-f71c-4abb-92a0-14c00f4fbc11 · outbound

This paper cites Se (3)-transformers: 3d roto- translation equivariant attention networks.

Group Ligands Docking to Protein Pockets Se (3)-transformers: 3d roto- translation equivariant attention networks

Reference 2015

Resolution
verified fuzzy
raw_fallback, observed 2026-08-10T14:45:03.112777Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-10T14:45:02.828129Z digest=sha256:464894e7fc5669041bad602ae5bc84f07c92c62db264f90bfa84ad553bbe7236

Observation 58e54c34-d8d9-4c15-8151-1464d87353db · outbound

This paper cites FABind+: Enhancing Molecular Docking through Improved Pocket Prediction and Pose Generation.

Group Ligands Docking to Protein Pockets FABind+: Enhancing Molecular Docking through Improved Pocket Prediction and Pose Generation

Reference 2020

Resolution
unresolved
no resolver link, observed 2026-08-10T14:45:02.832667Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-10T14:45:02.832667Z digest=sha256:3428294a2dd6f3610254cc444a69c92fb40eea1f495d469a495e0754d20f128a

Observation 5e409015-1661-4490-98e8-ddd07385e0ec · outbound

This paper cites E3Bind: An End-to-End Equivariant Network for Protein-Ligand Docking.

Group Ligands Docking to Protein Pockets E3Bind: An End-to-End Equivariant Network for Protein-Ligand Docking

Reference 2021

Resolution
unresolved
no resolver link, observed 2026-08-10T14:45:02.868945Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-10T14:45:02.868945Z digest=sha256:cf62d27af5fb9baa9713e64f19e1caa93a33a85c48f303eb0ee246a1bf8535d2

Observation 0ddad350-dc58-49e2-859a-fc3b6fd95c2b · outbound

This paper cites Tensor field networks: Rotation- and translation-equivariant neural networks for 3D point clouds.

Group Ligands Docking to Protein Pockets Tensor field networks: Rotation- and translation-equivariant neural networks for 3D point clouds

Reference 2022

Resolution
unresolved
no resolver link, observed 2026-08-10T14:45:02.860400Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-10T14:45:02.860400Z digest=sha256:9993d31df1dc7d164ad1f66fc8a13d2bb48e93928f113d3833c4159309320aa4

Observation 801af9cb-abc9-432c-9451-db2ac8a7e181 · outbound

This paper cites an unresolved cited work.

Group Ligands Docking to Protein Pockets Unresolved cited work

Reference 2023

Resolution
unresolved
raw_fallback, observed 2026-08-10T14:45:03.045343Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-10T14:45:02.874325Z digest=sha256:2937f3d9764927cb8f8df40042dff41f4bd1c3ac807df8992daf9cd6dc9c8884

Observation bb9ae86f-73f3-448a-9980-2c1b25db6654 · outbound

This paper cites DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking.

Group Ligands Docking to Protein Pockets DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking

Reference 2024

Resolution
unresolved
no resolver link, observed 2026-08-10T14:45:02.822730Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-10T14:45:02.822730Z digest=sha256:beeff884b94158176b537eafb3cb579f6da373e40fd022913ee41f35819e590d

Pith citing papers

Observation f826053b-5acb-439b-adcd-635e0251ccf6 · inbound

Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling cites this paper.

Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling Group Ligands Docking to Protein Pockets

Reference 37

Resolution
verified exact
local_arxiv, observed 2026-08-07T13:40:18.118220Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=arxiv_source observed=2026-08-07T13:35:57.653804Z digest=sha256:3955e9c44a0926c04d1480c4360308191db9c88ae8da2765c2012ecc7c0823c3