Boltz-ABFE: Free Energy Perturbation without Crystal Structures | Paper Citation Record

Observation fe85210b-13a7-4b6e-a23c-56e77231285e · outbound

This paper cites L.; Ravimohan, C.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures L.; Ravimohan, C

Reference 1

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T15:52:03.259529Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 4e7bee41-f426-4fda-8cba-84af45e911ac · outbound

This paper cites F.; McCammon, J.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures F.; McCammon, J

Reference 2

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T15:52:03.243019Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 6f5d47c7-747b-4b00-a6d9-92fee3d72fe9 · outbound

This paper cites Free energy calculations: applications to chemical and biochemical phenomena.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures Free energy calculations: applications to chemical and biochemical phenomena

Reference 3

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T15:52:03.226689Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation c7a92669-c143-423a-9a7d-e31c07d3e841 · outbound

This paper cites an unresolved cited work.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures Unresolved cited work

Reference 4

Resolution: unresolved; raw_fallback, observed 2026-08-05T15:52:03.211154Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 9e52e1a4-2209-444b-9ca2-48ca6ff0c69c · outbound

This paper cites an unresolved cited work.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures Unresolved cited work

Reference 5

Resolution: unresolved; raw_fallback, observed 2026-08-05T15:52:03.195754Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 9327616d-d68e-48f5-81f8-968ef01eeaa4 · outbound

This paper cites D.; Berne, B.; Friesner, R.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures D.; Berne, B.; Friesner, R

Reference 6

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T15:52:03.180357Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation c050b779-226f-4ee5-9d07-fc8f0144dde7 · outbound

This paper cites L.; Tirado-Rives, J.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures L.; Tirado-Rives, J

Reference 7

Resolution: unresolved; no resolver link, observed 2026-08-05T15:52:01.526924Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 9e261884-8dbd-4e53-955d-ae8dce887b83 · outbound

This paper cites L.; Maxwell, D.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures L.; Maxwell, D

Reference 8

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T15:52:03.155268Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 288800a1-58d9-4cf8-bd19-d2cac857e594 · outbound

This paper cites an unresolved cited work.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures Unresolved cited work

Reference 9

Resolution: unresolved; raw_fallback, observed 2026-08-05T15:52:03.140262Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation e175c45e-4045-45a6-a99d-f9fb3d23a770 · outbound

This paper cites A.; Jorgensen, W.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures A.; Jorgensen, W

Reference 10

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T15:52:03.125051Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation e63419f0-3dbe-4e3a-8ae7-a82e3d21b838 · outbound

This paper cites R.; van Gunsteren, W.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures R.; van Gunsteren, W

Reference 11

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T15:52:03.109069Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 7efd5623-7a0c-435d-9da7-6047c0eb7003 · outbound

This paper cites I.; Cieplak, P.; Cornell, W.; Kollman, P.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures I.; Cieplak, P.; Cornell, W.; Kollman, P

Reference 12

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T15:52:03.094442Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 1cfbfdbb-f703-4cff-8333-b9587966488d · outbound

This paper cites D.; Cieplak, P.; Bayly, C.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures D.; Cieplak, P.; Bayly, C

Reference 13

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T15:52:03.079945Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 390fef6c-dd07-4ca8-bd6e-977b557831b1 · outbound

This paper cites R.; Brooks III, C.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures R.; Brooks III, C

Reference 14

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T15:52:03.064171Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 9986298a-e95d-48bb-b35f-fc43b045d99e · outbound

This paper cites Journal of computational chemistry 2010, 31, 671--690.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures Journal of computational chemistry 2010, 31, 671--690

Reference 15

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T15:52:03.049065Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 133de8ed-2518-4e86-bbe0-9951088a2739 · outbound

This paper cites F.; Daura, X.; Mark, A.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures F.; Daura, X.; Mark, A

Reference 16

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T15:52:03.033481Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation c20eb256-1e9a-48fe-9045-410c8ce7a176 · outbound

This paper cites E.; Van Gunsteren, W.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures E.; Van Gunsteren, W

Reference 17

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T15:52:03.017607Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation ff6f9345-6d9c-4680-b246-5b5c6d27ea93 · outbound

This paper cites J.; Stockfisch, T.; Hagler, A.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures J.; Stockfisch, T.; Hagler, A

Reference 18

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T15:52:03.003312Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation d15b1d3b-d2eb-421f-a814-2cb66ae3399c · outbound

This paper cites R.; Hwang, M.-J.; Stockfisch, T.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures R.; Hwang, M.-J.; Stockfisch, T

Reference 19

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T15:52:02.986557Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation cee879b3-337c-4a43-a025-7512314f61a0 · outbound

This paper cites COMPASS: an ab initio force-field optimized for condensed-phase applications overview with details on alkane and benzene compounds.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures COMPASS: an ab initio force-field optimized for condensed-phase applications overview with details on alkane and benzene compounds

Reference 20

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T15:52:02.970716Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 34fa64b6-585d-47ee-a507-396e170db7a3 · outbound

This paper cites W.; Case, D.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures W.; Case, D

Reference 21

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T15:52:02.954149Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 54749090-64da-4d5d-8ff5-53f71aa9bc2d · outbound

This paper cites W.; Wu, C.; Ren, P.; Pande, V.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures W.; Wu, C.; Ren, P.; Pande, V

Reference 22

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T15:52:02.937229Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation fd84eaf5-925c-48e0-821f-79e68c838d8a · outbound

This paper cites J.; Kollman, P.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures J.; Kollman, P

Reference 23

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T15:52:02.920507Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 19a014ca-ea66-423a-99de-a31eb7da0de9 · outbound

This paper cites A.; Raguette, L.; Huang, H.; Migues, A.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures A.; Raguette, L.; Huang, H.; Migues, A

Reference 24

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T15:52:02.902535Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 412f1996-92a5-4296-826d-01bdda702395 · outbound

This paper cites L.; Grubm \"u ller, H.; MacKerell Jr, A.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures L.; Grubm \"u ller, H.; MacKerell Jr, A

Reference 25

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T15:52:02.887003Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 40ef01a5-6c89-4a87-8593-060be3c75676 · outbound

This paper cites A.; Dahlgren, M.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures A.; Dahlgren, M

Reference 26

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T15:52:02.871000Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation d4c2a514-05f1-4242-8532-b75807208ecd · outbound

This paper cites an unresolved cited work.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures Unresolved cited work

Reference 27

Resolution: unresolved; raw_fallback, observed 2026-08-05T15:52:02.855149Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 94e010ad-862a-4dbc-a640-cabed1d67a77 · outbound

This paper cites J.; Tirado-Rives, J.; Jorgensen, W.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures J.; Tirado-Rives, J.; Jorgensen, W

Reference 28

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T15:52:02.840919Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation e9dc9cdc-ff55-40e0-98ed-d1f36fa90d69 · outbound

This paper cites L.; Bannan, C.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures L.; Bannan, C

Reference 29

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T15:52:02.826218Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 62b6d1cd-918e-4574-a03d-34d54546b75b · outbound

This paper cites K.; Madin, O.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures K.; Madin, O

Reference 30

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T15:52:02.810722Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 8e8d5b3a-5f60-468c-b60d-a6dc80565b19 · outbound

This paper cites G.; Boothroyd, S.; Jang, H.; Hahn, D.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures G.; Boothroyd, S.; Jang, H.; Hahn, D

Reference 31

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T15:52:02.796142Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation e6afcc9f-45dc-4d9b-ba54-062b5e4db2c2 · outbound

This paper cites End-to-End Differentiable Molecular Mechanics Force Field Construction.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures End-to-End Differentiable Molecular Mechanics Force Field Construction

Reference 32

Resolution: metadata mismatch; local_arxiv, observed 2026-08-05T15:52:01.929986Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 8e89b796-beca-449c-b139-a3e84944eef7 · outbound

This paper cites K.; Thompson, M.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures K.; Thompson, M

Reference 33

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T15:52:02.781014Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation b8b27adb-d0ba-4ae7-a086-89ff54293f7b · outbound

This paper cites C.; Cherkasov, A.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures C.; Cherkasov, A

Reference 34

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T15:52:02.766178Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 0261549e-15ae-4641-9ee0-0f70b1ed4ad1 · outbound

This paper cites The maximal and current accuracy of rigorous protein-ligand binding free energy calculations.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures The maximal and current accuracy of rigorous protein-ligand binding free energy calculations

Reference 35

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T15:52:02.751747Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 6a4f09b8-b3df-42d3-998d-e60be92ebff4 · outbound

This paper cites L.; Bruce Macdonald, H.; Chodera, J.; Gapsys, V.; Mey, A.; Mobley, D.; Perez Benito, L.; Schindler, C.; et al.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures L.; Bruce Macdonald, H.; Chodera, J.; Gapsys, V.; Mey, A.; Mobley, D.; Perez Benito, L.; Schindler, C.; et al

Reference 36

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T15:52:02.736426Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 3185942d-9736-4141-868f-626ce775db56 · outbound

This paper cites http://www.eyesopen.com.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures http://www.eyesopen.com

Reference 37

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T15:52:02.721188Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation eedceb8f-6eb0-49c6-b447-dbc2fbceea1c · outbound

This paper cites an unresolved cited work.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures Unresolved cited work

Reference 38

Resolution: unresolved; raw_fallback, observed 2026-08-05T15:52:02.706626Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 120c7294-7fe1-47d5-a6d8-82de35728516 · outbound

This paper cites an unresolved cited work.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures Unresolved cited work

Reference 39

Resolution: unresolved; raw_fallback, observed 2026-08-05T15:52:02.690962Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 7fa9118b-37ca-4dc0-8030-4338c3ec7b33 · outbound

This paper cites V.; Michino, M.; Lenselink, E.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures V.; Michino, M.; Lenselink, E

Reference 40

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T15:52:02.675860Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 6ce88f1f-04be-417d-8e36-3cee7f4245fc · outbound

This paper cites International Conference on Learning Representations (ICLR 2023).

Boltz-ABFE: Free Energy Perturbation without Crystal Structures International Conference on Learning Representations (ICLR 2023)

Reference 41

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T15:52:02.533589Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation a48887c5-1179-4034-8681-17847d07b7f4 · outbound

This paper cites Fabind: Fast and accurate protein-ligand binding.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures Fabind: Fast and accurate protein-ligand binding

Reference 42

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T15:52:02.518648Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 11d34561-38fb-475f-bb7d-c20e5bbf8e10 · outbound

This paper cites Uni-Mol: A Universal 3D Molecular Representation Learning Framework.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures Uni-Mol: A Universal 3D Molecular Representation Learning Framework

Reference 43

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T15:52:02.503726Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 72deba2e-d57e-449f-9f9f-1c1e64905f39 · outbound

This paper cites Deep confident steps to new pockets: Strategies for docking generalization.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures Deep confident steps to new pockets: Strategies for docking generalization

Reference 44

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T15:52:02.487979Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 63578abf-d31b-4741-899e-77e9dc2e07d8 · outbound

This paper cites M.; Deane, C.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures M.; Deane, C

Reference 45

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T15:52:02.472119Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 33d86949-ca7e-4b16-afc2-3eb2cebc909d · outbound

This paper cites Nature 2021, 596, 583--589.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures Nature 2021, 596, 583--589

Reference 46

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T15:52:02.457305Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 4141164b-83da-4439-a04a-a449d7a95305 · outbound

This paper cites M.; D \' az, L.; Guallar, V.; Ray, S.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures M.; D \' az, L.; Guallar, V.; Ray, S

Reference 47

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T15:52:02.442042Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 7aedadde-1985-4092-80f2-54f98ac25bd4 · outbound

This paper cites P.; Vass, M.; Robinson, D.; Friesner, R.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures P.; Vass, M.; Robinson, D.; Friesner, R

Reference 48

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T15:52:02.426920Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 59f36f81-411b-4d54-baff-ac94132e8b4d · outbound

This paper cites J.; Bambrick, J.; others Accurate structure prediction of biomolecular interactions with AlphaFold 3.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures J.; Bambrick, J.; others Accurate structure prediction of biomolecular interactions with AlphaFold 3

Reference 49

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T15:52:02.411988Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 74f1149c-b3fa-4cfa-8235-eeaaff248a45 · outbound

This paper cites bioRxiv 2024,.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures bioRxiv 2024,

Reference 50

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T15:52:02.397364Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 27f26a17-e5ec-434a-9c24-7ce4a4bf1466 · outbound

This paper cites BioRxiv 2025, 2025--06.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures BioRxiv 2025, 2025--06

Reference 51

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T15:52:02.381848Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 5d048b9d-2827-4af6-b4a4-af6fa7813290 · outbound

This paper cites AlphaFold3 in Drug Discovery: A Comprehensive Assessment of Capabilities, Limitations, and Applications.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures AlphaFold3 in Drug Discovery: A Comprehensive Assessment of Capabilities, Limitations, and Applications

Reference 52

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T15:52:02.367218Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 1e41203b-a657-414f-b413-5d5e7c05ba34 · outbound

This paper cites an unresolved cited work.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures Unresolved cited work

Reference 53

Resolution: unresolved; raw_fallback, observed 2026-08-05T15:52:02.352781Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation c6dc0aa2-1bc3-40c0-9116-775f5d704bd3 · outbound

This paper cites J.; Alibay, I.; Swenson, D.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures J.; Alibay, I.; Swenson, D

Reference 54

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T15:52:02.337510Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation a3325acf-17ad-4a3a-8a34-b47c70971ea7 · outbound

This paper cites Optimizing Absolute Binding Free Energy Calculations for Production Usage.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures Optimizing Absolute Binding Free Energy Calculations for Production Usage

Reference 55

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T15:52:02.320750Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 4aef48ee-0b52-40b1-afb3-a5dcc5ba926c · outbound

This paper cites P.; Brown, S.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures P.; Brown, S

Reference 56

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T15:52:02.304991Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 780fc4e1-5459-4acf-a470-5de7d0c5bc90 · outbound

This paper cites FRED and HYBRID docking performance on standardized datasets.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures FRED and HYBRID docking performance on standardized datasets

Reference 57

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T15:52:02.289383Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 17bc13d0-0bac-480b-bd7c-053a0fbff247 · outbound

This paper cites an unresolved cited work.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures Unresolved cited work

Reference 58

Resolution: unresolved; raw_fallback, observed 2026-08-05T15:52:02.273792Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation cb13f761-65d6-4d4b-919d-5623347843b5 · outbound

This paper cites H.; Zuccotto, F.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures H.; Zuccotto, F

Reference 59

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T15:52:02.258952Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 97bb1b73-4020-41d9-a9c9-0495c1555c38 · outbound

This paper cites J.; Blackshaw, J.; Corbett, S.; De Veij, M.; Ioannidis, H.; Lopez, D.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures J.; Blackshaw, J.; Corbett, S.; De Veij, M.; Ioannidis, H.; Lopez, D

Reference 60

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T15:52:02.242244Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 6e053a41-9ccf-4b81-9315-07a37c14ae6a · outbound

This paper cites L.; de Vries, I.; Joosten, R.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures L.; de Vries, I.; Joosten, R

Reference 61

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T15:52:02.227108Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 17503717-a336-4144-aec7-f1666757620a · outbound

This paper cites M.; Mobley, D.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures M.; Mobley, D

Reference 62

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T15:52:02.211916Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 6c33b8ff-468c-4d96-974d-468e483d3288 · outbound

This paper cites ColabFold: making protein folding accessible to all.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures ColabFold: making protein folding accessible to all

Reference 63

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T15:52:02.195643Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 3c8876bd-5454-434d-a3c7-2d3bed0c20a4 · outbound

This paper cites MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets

Reference 64

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T15:52:02.180791Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation e653bf85-fb64-4035-99b3-8c4e929b3b52 · outbound

This paper cites OpenStructure: an integrated software framework for computational structural biology.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures OpenStructure: an integrated software framework for computational structural biology

Reference 65

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T15:52:02.164606Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 2a553e40-6917-4711-9db3-7fb4cdc5d735 · outbound

This paper cites OpenEyeToolkits.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures OpenEyeToolkits

Reference 66

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T15:52:02.148481Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation a4c45c93-aba6-46b7-88ad-719c2ed79faa · outbound

This paper cites BioSimSpace: An interoperable Python framework for biomolecular simulation.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures BioSimSpace: An interoperable Python framework for biomolecular simulation

Reference 67

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T15:52:02.132717Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 08301408-7f72-4af5-aec7-8b91a756e838 · outbound

This paper cites A.; Martinez, C.; Kasavajhala, K.; Wickstrom, L.; Hauser, K.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures A.; Martinez, C.; Kasavajhala, K.; Wickstrom, L.; Hauser, K

Reference 68

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T15:52:02.117289Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation cda75960-6145-40b1-81ef-62a8f5b0d0b4 · outbound

This paper cites M.; Caldwell, J.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures M.; Caldwell, J

Reference 69

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T15:52:02.101706Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 7171f0b5-5849-4115-831b-324a66c4663d · outbound

This paper cites K.; Madin, O.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures K.; Madin, O

Reference 70

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T15:52:02.086565Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation a6abed6a-43de-4664-bc4a-f36b88efff4c · outbound

This paper cites B.; Bayly, C.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures B.; Bayly, C

Reference 71

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T15:52:02.069005Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation f937949f-1b6c-4a0b-91c0-f300ff6e59c0 · outbound

This paper cites an unresolved cited work.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures Unresolved cited work

Reference 72

Resolution: unresolved; raw_fallback, observed 2026-08-05T15:52:02.050292Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 29d47345-cfd1-4c42-8b03-78742d853797 · outbound

This paper cites Optimizing Absolute Binding Free Energy Calculations for Production Usage.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures Optimizing Absolute Binding Free Energy Calculations for Production Usage

Reference 73

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T15:52:02.033549Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 7e56a94e-8990-4e3a-89ef-02a03dbd87b3 · outbound

This paper cites R.; Brooks, B.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures R.; Brooks, B

Reference 74

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T15:52:02.017176Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 72569cce-f8a6-4a02-b08c-52b90d2d77c2 · outbound

This paper cites J.; Murtola, T.; Schulz, R.; Páll, S.; Smith, J.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures J.; Murtola, T.; Schulz, R.; Páll, S.; Smith, J

Reference 75

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T15:52:02.001044Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 4d68e368-1016-460c-9e2b-8c24014aec6a · outbound

This paper cites Boltz-2" in the Figure), Boltz-1 with redocking using POSIT (.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures Boltz-2" in the Figure), Boltz-1 with redocking using POSIT (

Reference 76

Resolution: malformed identifier; raw_fallback, observed 2026-08-05T15:52:01.970937Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation c5b9c575-cba6-4145-8b96-da388dc3739f · outbound

This paper cites , " * write output.state after.block = add.period write.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures , " * write output.state after.block = add.period write

Reference 77

Resolution: unresolved; no resolver link, observed 2026-08-05T15:52:01.875902Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation a7992f1f-8f20-4b31-8c9a-6d3515bf14ae · outbound

This paper cites write newline.

Boltz-ABFE: Free Energy Perturbation without Crystal Structures write newline

Reference 78

Resolution: unresolved; no resolver link, observed 2026-08-05T15:52:01.880858Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Coverage vector

Reference resolution

Outbound references

Pith citing papers