Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation | Paper Citation Record

Observation 2f53336b-bd02-4c24-b145-e5b843812c87 · outbound

This paper cites Structural basis of protein-nucleic acid interac- tions.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation Structural basis of protein-nucleic acid interac- tions

Reference 1

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:04:39.408664Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation ed894b00-b4f7-4939-9fa3-e7bf80790e52 · outbound

This paper cites Protein–rna inter- actions: new genomic technologies and perspectives.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation Protein–rna inter- actions: new genomic technologies and perspectives

Reference 2

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:04:39.172369Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 46061ab3-4309-4891-9914-633097da2e1a · outbound

This paper cites Comprehensive review and empirical analysis of hallmarks of dna-, rna-and protein-binding residues in protein chains.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation Comprehensive review and empirical analysis of hallmarks of dna-, rna-and protein-binding residues in protein chains

Reference 3

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:04:38.899503Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation dc201d64-755f-4b80-9b28-e6524dd6ebe6 · outbound

This paper cites A single amino acid can determine the dna binding specificity of homeodomain proteins.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation A single amino acid can determine the dna binding specificity of homeodomain proteins

Reference 4

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:04:38.632784Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation c812182b-eb5b-4beb-82f3-b44c1e79904e · outbound

This paper cites Protein–dna interactions: amino acid conservation and the effects of mutations on binding specificity.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation Protein–dna interactions: amino acid conservation and the effects of mutations on binding specificity

Reference 5

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:04:38.442571Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation bc389080-a726-4ce7-8fa3-d7f057fc92b9 · outbound

This paper cites Dissecting the expression landscape of rna-binding proteins in human cancers.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation Dissecting the expression landscape of rna-binding proteins in human cancers

Reference 6

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:04:38.289695Z

Source-reported events for the cited work

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Observation bdc58491-8210-4743-a581-eae254cb12fb · outbound

This paper cites Dna- pkcs structure suggests an allosteric mechanism modulating dna double-strand break repair.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation Dna- pkcs structure suggests an allosteric mechanism modulating dna double-strand break repair

Reference 7

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:04:38.065680Z

Source-reported events for the cited work

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Observation f66ff11f-4ef9-4866-8032-3cfea12e1fc5 · outbound

This paper cites Cancer-associated point mutations in the dlc1 tumor sup- pressor and other rho-gaps occur frequently and are associated with decreased function.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation Cancer-associated point mutations in the dlc1 tumor sup- pressor and other rho-gaps occur frequently and are associated with decreased function

Reference 8

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:04:37.858355Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation b7361898-8670-4fee-89a7-de4b65ba3154 · outbound

This paper cites Frontotemporal dementia-linked p112h mutation of tdp-43 induces protein structural change and impairs its rna binding function.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation Frontotemporal dementia-linked p112h mutation of tdp-43 induces protein structural change and impairs its rna binding function

Reference 9

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:04:37.727774Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation d2a4f2ec-3e8f-4e35-9cf7-fe47f3859472 · outbound

This paper cites Surface plasmon resonance: a versatile technique for biosensor applications.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation Surface plasmon resonance: a versatile technique for biosensor applications

Reference 10

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:04:37.533511Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 81247fa5-2439-4432-b94e-3b22f0f92673 · outbound

This paper cites Isothermal titration calorimetry.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation Isothermal titration calorimetry

Reference 11

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:04:37.332011Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 12fe84e3-eda1-4c9e-85e5-98c0d9df9095 · outbound

This paper cites Recent advances in fret: distance determination in protein–dna complexes.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation Recent advances in fret: distance determination in protein–dna complexes

Reference 12

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:04:37.194684Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation eb4e30d8-ae34-4e4e-8bec-c54f0e49f5e2 · outbound

This paper cites Predicting protein–dna binding free energy change upon missense mutations using modified mm/pbsa approach: Sampdi webserver.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation Predicting protein–dna binding free energy change upon missense mutations using modified mm/pbsa approach: Sampdi webserver

Reference 13

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:04:37.040586Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 77f71475-eebe-44ae-aa5f-2dbf7bb10426 · outbound

This paper cites Sampdi-3d: predicting the effects of protein and dna mutations on protein–dna interactions.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation Sampdi-3d: predicting the effects of protein and dna mutations on protein–dna interactions

Reference 14

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:04:36.939375Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 433d2223-ca45-423f-bbfc-e1f7303ed361 · outbound

This paper cites Further development of sampdi-3d: A machine learning method for predicting binding free energy changes caused by mutations in either protein or dna.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation Further development of sampdi-3d: A machine learning method for predicting binding free energy changes caused by mutations in either protein or dna

Reference 15

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:04:36.803811Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation d54eefc4-b8b6-4937-a7b0-1d2f50baaa95 · outbound

This paper cites Prempdi estimates and interprets the effects of missense mutations on protein-dna interactions.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation Prempdi estimates and interprets the effects of missense mutations on protein-dna interactions

Reference 16

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:04:36.657588Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation dd394d9a-cdd5-425b-a14d-d42ac1ea116f · outbound

This paper cites Prempri: Predicting the effects of missense mutations on protein–rna interactions.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation Prempri: Predicting the effects of missense mutations on protein–rna interactions

Reference 17

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:04:36.534751Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 598058bc-2284-4957-abf9-709d0284e0d4 · outbound

This paper cites Pra-mutpred: Predicting the effect of point mutations in protein–rna complexes using structural features.Journal of Chemical Information and Modeling , 2025.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation Pra-mutpred: Predicting the effect of point mutations in protein–rna complexes using structural features.Journal of Chemical Information and Modeling , 2025

Reference 18

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:04:36.400446Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 9990fbd8-3d98-453a-9107-af54caa9a570 · outbound

This paper cites mcsm–na: predicting the effects of mutations on protein–nucleic acids interactions.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation mcsm–na: predicting the effects of mutations on protein–nucleic acids interactions

Reference 19

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:04:36.257374Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation f724b925-0cb1-4f1f-b416-b4aa74a6d234 · outbound

This paper cites Systematic comparison and prediction of the effects of missense mutations on protein-dna and protein-rna interactions.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation Systematic comparison and prediction of the effects of missense mutations on protein-dna and protein-rna interactions

Reference 20

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:04:36.143329Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation d481db34-6b44-437f-989b-af38bbc5e05f · outbound

This paper cites Pnbace: an ensemble algorithm to predict the effects of mutations on protein-nucleic acid binding affinity.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation Pnbace: an ensemble algorithm to predict the effects of mutations on protein-nucleic acid binding affinity

Reference 21

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:04:35.969703Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 96ea41cd-3d04-4531-a4c9-5f1e701ea6b2 · outbound

This paper cites Computing persistent homology.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation Computing persistent homology

Reference 22

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:04:35.833714Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 6f000626-b040-422d-ac24-3aae694d30c6 · outbound

This paper cites Topological data analy- sis.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation Topological data analy- sis

Reference 23

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:04:35.678441Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation fa52d8ac-4f29-45b6-bcf1-64c1079ce40b · outbound

This paper cites A topological approach for protein classification.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation A topological approach for protein classification

Reference 24

Resolution: unresolved; no resolver link, observed 2026-08-07T13:04:23.721568Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 11aafe15-260d-4f7e-aa67-5fdd3c468505 · outbound

This paper cites Topologynet: Topology based deep convolutional and multi-task neural networks for biomolecular property predictions.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation Topologynet: Topology based deep convolutional and multi-task neural networks for biomolecular property predictions

Reference 25

Resolution: unresolved; no resolver link, observed 2026-08-07T13:04:23.829842Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 192a0fa3-e88a-4850-8272-0956a411d5a2 · outbound

This paper cites Position: Topological deep learning is the new frontier for relational learning.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation Position: Topological deep learning is the new frontier for relational learning

Reference 26

Resolution: unresolved; no resolver link, observed 2026-08-07T13:04:23.936987Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 9d3c6a2c-f839-4738-85f1-3e6abbd16b9b · outbound

This paper cites Mathematical deep learning for pose and binding affinity prediction and ranking in d3r grand challenges.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation Mathematical deep learning for pose and binding affinity prediction and ranking in d3r grand challenges

Reference 27

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:04:35.504211Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 6c6c95e5-a40c-46e3-91a8-e39b12d50395 · outbound

This paper cites Mathdl: mathematical deep learning for d3r grand challenge 4.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation Mathdl: mathematical deep learning for d3r grand challenge 4

Reference 28

Resolution: unresolved; no resolver link, observed 2026-08-07T13:04:24.178618Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 306441dd-1bc1-41c4-b778-e0e95df10ee9 · outbound

This paper cites Persistent spectral graph.International journal for numerical methods in biomedical engineering , 36(9):e3376, 2020.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation Persistent spectral graph.International journal for numerical methods in biomedical engineering , 36(9):e3376, 2020

Reference 29

Resolution: unresolved; no resolver link, observed 2026-08-07T13:04:24.272069Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 34320639-8a1b-4ec2-bb85-8454b65bd361 · outbound

This paper cites Persistent topological Laplacians–a Survey.Mathematics, 13(2):208, 2025.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation Persistent topological Laplacians–a Survey.Mathematics, 13(2):208, 2025

Reference 30

Resolution: unresolved; no resolver link, observed 2026-08-07T13:04:24.381090Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 0f60a063-b860-4a31-a9b4-34527380fe12 · outbound

This paper cites Persistent laplacians: Properties, algorithms and implications.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation Persistent laplacians: Properties, algorithms and implications

Reference 31

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:04:35.298128Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 6f64a323-0f2e-42eb-a720-446b27f6070b · outbound

This paper cites The algebraic stability for persistent Laplacians.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation The algebraic stability for persistent Laplacians

Reference 32

Resolution: unresolved; no resolver link, observed 2026-08-07T13:04:24.545522Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 5b0aa445-7aa0-49dc-97cd-bbdd3c565f42 · outbound

This paper cites Persistent spectral–based machine learning (perspect ml) for protein-ligand binding affinity prediction.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation Persistent spectral–based machine learning (perspect ml) for protein-ligand binding affinity prediction

Reference 33

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:04:35.164781Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation dc30b68f-fa9b-432f-87b6-83f2729fb61a · outbound

This paper cites Persistent spectral theory-guided protein engineering.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation Persistent spectral theory-guided protein engineering

Reference 34

Resolution: unresolved; no resolver link, observed 2026-08-07T13:04:24.690791Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 4466050b-f8e0-4c74-97a0-5d0353b25dee · outbound

This paper cites Persistent laplacian projected omicron ba.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation Persistent laplacian projected omicron ba

Reference 35

Resolution: unresolved; no resolver link, observed 2026-08-07T13:04:24.782789Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation c58660a9-b98f-40c1-8422-0fe833fa24cc · outbound

This paper cites A topology-based network tree for the prediction of protein–protein binding affinity changes following mutation.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation A topology-based network tree for the prediction of protein–protein binding affinity changes following mutation

Reference 36

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:04:34.996537Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 1a131eb2-6f1f-4e05-9e08-b06a55cfef3c · outbound

This paper cites Persistent spectral based ensemble learning (perspect-el) for protein–protein binding affinity prediction.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation Persistent spectral based ensemble learning (perspect-el) for protein–protein binding affinity prediction

Reference 37

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:04:34.828772Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 8aa714ff-8016-419e-83dc-e4b28de45a1f · outbound

This paper cites Hom-complex-based machine learning (hcml) for the prediction of protein–protein binding affinity changes upon mutation.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation Hom-complex-based machine learning (hcml) for the prediction of protein–protein binding affinity changes upon mutation

Reference 38

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:04:34.695086Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 91320a0a-c7ee-4039-ac29-998ebca9826d · outbound

This paper cites Persistent tor-algebra for protein– protein interaction analysis.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation Persistent tor-algebra for protein– protein interaction analysis

Reference 39

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:04:34.517294Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 1934810c-b674-4dde-8181-69f6e828cd25 · outbound

This paper cites Greedy function approximation: a gradient boosting machine.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation Greedy function approximation: a gradient boosting machine

Reference 40

Resolution: unresolved; no resolver link, observed 2026-08-07T13:04:25.202088Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation b8766b92-017a-42b7-9581-62f2b13cf40a · outbound

This paper cites Pronab: database for binding affinities of protein–nucleic acid complexes and their mutants.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation Pronab: database for binding affinities of protein–nucleic acid complexes and their mutants

Reference 41

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:04:34.365512Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 7305bf41-abc8-492f-8738-43aa0323a7c2 · outbound

This paper cites Protherm and pronit: thermodynamic databases for proteins and protein–nucleic acid interactions.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation Protherm and pronit: thermodynamic databases for proteins and protein–nucleic acid interactions

Reference 42

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:04:34.225210Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 9d5c82c2-0af8-4baa-a2dd-805803002edf · outbound

This paper cites dbamepni: a database of alanine mutagenic effects for protein–nucleic acid interactions.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation dbamepni: a database of alanine mutagenic effects for protein–nucleic acid interactions

Reference 43

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:04:34.064826Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation a1887743-fdef-4ecb-8305-ed64b20bb077 · outbound

This paper cites The foldx web server: an online force field.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation The foldx web server: an online force field

Reference 44

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:04:33.922190Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 5772c2b8-471f-4c90-b1eb-625df7b69879 · outbound

This paper cites A simple definition of structural regions in proteins and its use in analyzing interface evolution.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation A simple definition of structural regions in proteins and its use in analyzing interface evolution

Reference 45

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:04:33.794344Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation b3760779-7fb0-4c83-9518-e8537fec8bd0 · outbound

This paper cites Persistent sheaf Laplacians.Foundations of Data Science, 7(2):446–463, 2025.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation Persistent sheaf Laplacians.Foundations of Data Science, 7(2):446–463, 2025

Reference 46

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:04:33.638549Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation f529d594-b88b-44b7-9383-c697ac9d37c1 · outbound

This paper cites Quantum persistent ho- mology.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation Quantum persistent ho- mology

Reference 47

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:04:33.500020Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 0dc717a5-5d39-4beb-bc76-1c31f7051e7d · outbound

This paper cites Persistent dirac of paths on digraphs and hyper- graphs.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation Persistent dirac of paths on digraphs and hyper- graphs

Reference 48

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:04:33.366472Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 64ddd931-5f73-406a-ae1e-3e09baf7c24a · outbound

This paper cites Random forests.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation Random forests

Reference 49

Resolution: unresolved; no resolver link, observed 2026-08-07T13:04:26.162150Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 6b9a0397-b647-4bb1-bd83-0762788a2f92 · outbound

This paper cites Xgboost: A scalable tree boosting system.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation Xgboost: A scalable tree boosting system

Reference 50

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:04:33.252201Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation aa2c29df-a060-4b4e-a54e-a05df508c2b1 · outbound

This paper cites Stacked generalization.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation Stacked generalization

Reference 51

Resolution: unresolved; no resolver link, observed 2026-08-07T13:04:26.457179Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation e0cb0b72-cf34-4a3c-8111-4dfbbcbb5936 · outbound

This paper cites Integration of element specific persistent homology and machine learning for protein-ligand binding affinity prediction.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation Integration of element specific persistent homology and machine learning for protein-ligand binding affinity prediction

Reference 52

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:04:33.096016Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 9a50c6c5-f884-427c-9e1d-46dce1c2916a · outbound

This paper cites ¨Uber den h¨ oheren zusammenhang kompakter r¨ aume und eine klasse von zusammenhangstreuen abbildungen.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation ¨Uber den h¨ oheren zusammenhang kompakter r¨ aume und eine klasse von zusammenhangstreuen abbildungen

Reference 53

Resolution: unresolved; no resolver link, observed 2026-08-07T13:04:26.662755Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 469dbe6b-8f41-4634-a1ba-ed0f4c273292 · outbound

This paper cites Alpha shapes-a survey.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation Alpha shapes-a survey

Reference 54

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:04:32.947948Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation b2d59563-b30a-4e61-ba3c-0097965bc5bc · outbound

This paper cites MIBPB: a software package for electrostatic analysis.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation MIBPB: a software package for electrostatic analysis

Reference 55

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:04:32.822143Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 9b8a4449-3ace-4fdf-a1fe-9e123cb91d8a · outbound

This paper cites The Journal of Physical Chemistry B , 105 (28):6507–6514, 2001.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation The Journal of Physical Chemistry B , 105 (28):6507–6514, 2001

Reference 56

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:04:32.670240Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 7b2f78b4-149e-4514-97fd-693a43dfe9fb · outbound

This paper cites Improvements to the apbs biomolecular solvation software suite.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation Improvements to the apbs biomolecular solvation software suite

Reference 57

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:04:32.540038Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 78349c94-be60-4677-81a8-9b7d02d25f7d · outbound

This paper cites Biological structure and function emerge from scaling unsupervised learning to 250 million protein sequences.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation Biological structure and function emerge from scaling unsupervised learning to 250 million protein sequences

Reference 58

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:04:32.421539Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation f7a9016a-51b4-439f-98c0-7e6091b07bc9 · outbound

This paper cites Prottrans: Toward understanding the language of life through self-supervised learn- ing.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation Prottrans: Toward understanding the language of life through self-supervised learn- ing

Reference 59

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:04:32.238344Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation a73832a5-0085-4dcb-b6a0-fa57e8955933 · outbound

This paper cites Evolutionary-scale pre- diction of atomic-level protein structure with a language model.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation Evolutionary-scale pre- diction of atomic-level protein structure with a language model

Reference 60

Resolution: unresolved; no resolver link, observed 2026-08-07T13:04:27.367077Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 1412ee9b-acb3-4647-be98-eb508c9c186b · outbound

This paper cites ESES: Software for Eulerian solvent excluded surface, 2017.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation ESES: Software for Eulerian solvent excluded surface, 2017

Reference 61

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:04:32.003700Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 48146c5a-2c0b-4ad9-a25b-a8debe9d9c45 · outbound

This paper cites Pdb2pqr: an automated pipeline for the setup of poisson–boltzmann electrostatics calculations.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation Pdb2pqr: an automated pipeline for the setup of poisson–boltzmann electrostatics calculations

Reference 62

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:04:31.693802Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation ce2e0a64-2fad-44be-9920-3a61e21ad64c · outbound

This paper cites Very fast prediction and rational- ization of pka values for protein–ligand complexes.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation Very fast prediction and rational- ization of pka values for protein–ligand complexes

Reference 63

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:04:31.446095Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation b18e496b-f082-4439-9389-4244b33ff95f · outbound

This paper cites Gapped blast and psi-blast: a new generation of protein database search programs.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation Gapped blast and psi-blast: a new generation of protein database search programs

Reference 64

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:04:31.240728Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 6976bd29-6231-4dcc-acf0-3d92ef92acb2 · outbound

This paper cites Spider2: a package to predict 21 secondary structure, accessible surface area, and main-chain torsional angles by deep neural networks.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation Spider2: a package to predict 21 secondary structure, accessible surface area, and main-chain torsional angles by deep neural networks

Reference 65

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:04:31.030509Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 3c8b272b-15f2-46e0-a0dd-5fda76e8f820 · outbound

This paper cites Jackal: A protein structure modeling package.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation Jackal: A protein structure modeling package

Reference 66

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:04:30.737799Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation f2b4b523-b4a3-4109-b8d7-836932ca7a42 · outbound

This paper cites The gudhi library: Simplicial complexes and persistent homology.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation The gudhi library: Simplicial complexes and persistent homology

Reference 67

Resolution: unresolved; no resolver link, observed 2026-08-07T13:04:27.854089Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 2f74542d-9c7e-42a0-a22d-f980e5fd63c2 · outbound

This paper cites scipy/scipy: Scipy 1.15.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation scipy/scipy: Scipy 1.15

Reference 68

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:04:30.411246Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 123d83dd-2d4e-4189-abcd-24ef61ebf9f5 · outbound

This paper cites Atom surface areas within each group are summed up to generate one feature, leading to (5 × 7 + 1) × 3 = 108 features.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation Atom surface areas within each group are summed up to generate one feature, leading to (5 × 7 + 1) × 3 = 108 features

Reference 69

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:04:30.126117Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 00100334-472b-48b4-8b92-2c0807be8eb9 · outbound

This paper cites For each atom group, both the sum of partial charges and the sum of 23 absolute partial charges are considered.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation For each atom group, both the sum of partial charges and the sum of 23 absolute partial charges are considered

Reference 70

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:04:29.914340Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 4a59f2c8-a730-4e8b-89f8-b3a58405b27c · outbound

This paper cites The constant of 1 is used in our computation.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation The constant of 1 is used in our computation

Reference 71

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:04:29.680807Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation aceae449-541d-4c06-bba0-5e602f4f54ad · outbound

This paper cites The van der Waals energy of the i-th atom is computed as the sum of pairwise Lennard-Jones potentials with all other atoms.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation The van der Waals energy of the i-th atom is computed as the sum of pairwise Lennard-Jones potentials with all other atoms

Reference 72

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:04:29.560495Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation f89382bd-a021-44db-9e8e-9f7e4b43ac05 · outbound

This paper cites The electrostatic solvation free energy for each atom is computed using the Poisson-Boltzmann model through the software MIBPM [55].

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation The electrostatic solvation free energy for each atom is computed using the Poisson-Boltzmann model through the software MIBPM [55]

Reference 73

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:04:29.412603Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 447d503b-43ab-4ea2-98f5-fb1bcb2484fe · outbound

This paper cites Neighboring residues within 12 ˚A of the mutation site are considered.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation Neighboring residues within 12 ˚A of the mutation site are considered

Reference 74

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:04:29.288222Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 2bc4801e-3fd1-4896-b93a-567db1ae0980 · outbound

This paper cites The pKa values of residues are computed using PROPKA software [63].

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation The pKa values of residues are computed using PROPKA software [63]

Reference 75

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:04:29.143420Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 58ac8255-2141-4a3a-8fbc-83efbaa2094d · outbound

This paper cites Features are computed from the conservation scores in the PSSM of the mutation site.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation Features are computed from the conservation scores in the PSSM of the mutation site

Reference 76

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:04:28.998879Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation a4ffd017-c664-4f35-b67b-27789c955cd0 · outbound

This paper cites The SPIDER software [65] is used to compute the probability of residue torsion angle and a residue being in a coil, alpha helix, and beta strand.

Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation The SPIDER software [65] is used to compute the probability of residue torsion angle and a residue being in a coil, alpha helix, and beta strand

Reference 77

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:04:28.860123Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

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Reference resolution

Outbound references

Pith citing papers