Paper Citation Record · LEDGER

Hashing for Protein Structure Similarity Search

As of 13 August 2026, this Paper Citation Record lists 32 of 32 outbound references and 0 inbound Pith citation observations for arXiv:2411.08286.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2411.08286 v1

Coverage vector

measured 32 of 32 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-12T21:51:02.835548Z

measured 32 of 32 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-13T06:32:02.005865+00:00

measured 0 of 0 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: cited_works

Reference resolution

32 of 32 outbound references displayed

verified exact0
verified fuzzy24
unresolved8
parse uncertain0
malformed identifier0
metadata mismatch0

External citation measurements

No source-named external measurement is stored.

Outbound references

Observation 234c643e-08bd-4d0a-a26b-cd805cfa7e7d · outbound

This paper cites Tm-align: a protein structure alignment algorithm based on the tm-score.

Hashing for Protein Structure Similarity Search Tm-align: a protein structure alignment algorithm based on the tm-score

Reference 1

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T21:51:03.523003Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation c362368a-8010-4110-91ad-abe3b348880a · outbound

This paper cites Matt: local flexibility aids protein multiple structure alignment.

Hashing for Protein Structure Similarity Search Matt: local flexibility aids protein multiple structure alignment

Reference 2

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T21:51:03.502984Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 5a06cb1f-fd23-4941-a94d-3e74beaf287c · outbound

This paper cites Protein structure alignment by incremental combinato- rial extension (ce) of the optimal path.

Hashing for Protein Structure Similarity Search Protein structure alignment by incremental combinato- rial extension (ce) of the optimal path

Reference 3

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T21:51:03.481285Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 9ad01ba1-3ffb-4eb1-82e2-9942e8292061 · outbound

This paper cites Flexible structure alignment by chaining aligned fragment pairs allowing twists.

Hashing for Protein Structure Similarity Search Flexible structure alignment by chaining aligned fragment pairs allowing twists

Reference 4

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T21:51:03.458916Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation de3d9f79-3fd7-49c1-8152-aa0073bf63a8 · outbound

This paper cites Protein structure alignment beyond spatial proximity.

Hashing for Protein Structure Similarity Search Protein structure alignment beyond spatial proximity

Reference 5

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T21:51:03.434825Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 3ea6943f-f0c8-4a34-b00f-fcf7a1fae9ca · outbound

This paper cites The protein threading problem with sequence amino acid interaction preferences is np-complete.

Hashing for Protein Structure Similarity Search The protein threading problem with sequence amino acid interaction preferences is np-complete

Reference 6

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T21:51:03.414573Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation f73cd9fa-81c8-4a40-97c3-8132618c061b · outbound

This paper cites Fox, Steven E.

Hashing for Protein Structure Similarity Search Fox, Steven E

Reference 7

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T21:51:03.393653Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation a1ccff5a-0eb5-4d3c-a6f9-385a917ab5a9 · outbound

This paper cites Highly accurate protein structure prediction with alphafold.

Hashing for Protein Structure Similarity Search Highly accurate protein structure prediction with alphafold

Reference 8

Resolution: unresolved; no resolver link, observed 2026-08-12T21:51:02.698780Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation c93ea923-8a5d-4b6c-a82f-8eaf93247ef5 · outbound

This paper cites Accurate prediction of protein structures and interactions using a three-track neural network.

Hashing for Protein Structure Similarity Search Accurate prediction of protein structures and interactions using a three-track neural network

Reference 9

Resolution: unresolved; no resolver link, observed 2026-08-12T21:51:02.704392Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 793732dd-e86c-4031-b8b3-6247c8d06157 · outbound

This paper cites Language models of protein sequences at the scale of evolution enable accurate structure prediction.

Hashing for Protein Structure Similarity Search Language models of protein sequences at the scale of evolution enable accurate structure prediction

Reference 10

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T21:51:03.336504Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 182a40fa-be1e-4199-8a2b-204d3577059b · outbound

This paper cites Alphafold protein structure database: massively expanding the structural coverage of protein-sequence space with high-accuracy models.

Hashing for Protein Structure Similarity Search Alphafold protein structure database: massively expanding the structural coverage of protein-sequence space with high-accuracy models

Reference 11

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T21:51:03.312723Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 2c6d2d7b-616c-4f35-bf8c-7f84aaefd801 · outbound

This paper cites Automatic classification of protein structure by using gauss integrals.

Hashing for Protein Structure Similarity Search Automatic classification of protein structure by using gauss integrals

Reference 12

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T21:51:03.280244Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation eb22a510-0a55-44c5-a2c1-56ee6656f9dd · outbound

This paper cites Secondary structure spatial conformation footprint: a novel method for fast protein structure comparison and classification.

Hashing for Protein Structure Similarity Search Secondary structure spatial conformation footprint: a novel method for fast protein structure comparison and classification

Reference 13

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T21:51:03.255044Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 1db6e965-7b6e-4b01-9263-1bc088ea32b9 · outbound

This paper cites Learning structural motif representations for efficient protein structure search.

Hashing for Protein Structure Similarity Search Learning structural motif representations for efficient protein structure search

Reference 14

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T21:51:03.234980Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 9bb217b1-c18c-4b60-a733-9baa6166fa51 · outbound

This paper cites Fast protein structure comparison through effective representation learning with contrastive graph neural networks.

Hashing for Protein Structure Similarity Search Fast protein structure comparison through effective representation learning with contrastive graph neural networks

Reference 15

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T21:51:03.217898Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 27d923ae-8029-4b56-b6cd-179ff20e844b · outbound

This paper cites Scoring function for automated assessment of protein structure template quality.

Hashing for Protein Structure Similarity Search Scoring function for automated assessment of protein structure template quality

Reference 16

Resolution: unresolved; no resolver link, observed 2026-08-12T21:51:02.742277Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 2340080e-0960-4679-98fa-4b7da57f34ff · outbound

This paper cites Critically assessing the state-of-the-art in protein structure prediction.

Hashing for Protein Structure Similarity Search Critically assessing the state-of-the-art in protein structure prediction

Reference 17

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T21:51:03.178126Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation a228824b-a080-4d7b-ab95-6752134f1d2c · outbound

This paper cites Fast and accurate protein structure search with foldseek.

Hashing for Protein Structure Similarity Search Fast and accurate protein structure search with foldseek

Reference 18

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T21:51:03.151808Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 6406ab85-fc89-4841-bdf1-db80439f965a · outbound

This paper cites Convolutional lstm network: A machine learning approach for precipitation nowcasting.

Hashing for Protein Structure Similarity Search Convolutional lstm network: A machine learning approach for precipitation nowcasting

Reference 19

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T21:51:03.131362Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation bdda6172-28e3-45e5-a800-1b97c8063e00 · outbound

This paper cites Semi-Supervised Classification with Graph Convolutional Networks.

Hashing for Protein Structure Similarity Search Semi-Supervised Classification with Graph Convolutional Networks

Reference 20

Resolution: unresolved; no resolver link, observed 2026-08-12T21:51:02.764231Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 0cb1c970-837c-479e-8762-1da1a9092b63 · outbound

This paper cites Feature learning based deep supervised hashing with pairwise labels.

Hashing for Protein Structure Similarity Search Feature learning based deep supervised hashing with pairwise labels

Reference 21

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T21:51:03.109223Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 48456df1-5ec4-4897-b5b6-67ba3e1b6360 · outbound

This paper cites Hashnet: Deep learning to hash by continuation.

Hashing for Protein Structure Similarity Search Hashnet: Deep learning to hash by continuation

Reference 22

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T21:51:03.088739Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation c5d788e0-e4f3-4c81-a340-4de0d46ffde6 · outbound

This paper cites Hashing based answer selection.

Hashing for Protein Structure Similarity Search Hashing based answer selection

Reference 23

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T21:51:03.069765Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation a1ecbe72-9e64-47cf-aae1-52dc12026f23 · outbound

This paper cites Efficient passage retrieval with hashing for open-domain question answering.

Hashing for Protein Structure Similarity Search Efficient passage retrieval with hashing for open-domain question answering

Reference 24

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T21:51:03.049618Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation fa93477c-e5ff-4200-be2c-558a81383b3b · outbound

This paper cites Learning efficient hash codes for fast graph-based data similarity retrieval.IEEE Transactions on Image Processing, 30:6321–6334, 2021.

Hashing for Protein Structure Similarity Search Learning efficient hash codes for fast graph-based data similarity retrieval.IEEE Transactions on Image Processing, 30:6321–6334, 2021

Reference 25

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T21:51:03.031408Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation ad4aca74-aa49-43d5-b2ed-338c9b565b89 · outbound

This paper cites Robust deep learning–based protein sequence design using proteinmpnn.

Hashing for Protein Structure Similarity Search Robust deep learning–based protein sequence design using proteinmpnn

Reference 26

Resolution: unresolved; no resolver link, observed 2026-08-12T21:51:02.795192Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 9bf39edd-d986-4acc-8992-2e6f97f17e6a · outbound

This paper cites PiFold: Toward effective and efficient protein inverse folding.

Hashing for Protein Structure Similarity Search PiFold: Toward effective and efficient protein inverse folding

Reference 27

Resolution: unresolved; no resolver link, observed 2026-08-12T21:51:02.805983Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 529d6f92-1c47-487d-8f0e-3df97db7f46d · outbound

This paper cites Lozano, Payel Das, and Jian Tang.

Hashing for Protein Structure Similarity Search Lozano, Payel Das, and Jian Tang

Reference 28

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T21:51:02.999830Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 992a6adb-367b-47d7-9b81-f6f7bf49d336 · outbound

This paper cites Representation Learning with Contrastive Predictive Coding.

Hashing for Protein Structure Similarity Search Representation Learning with Contrastive Predictive Coding

Reference 29

Resolution: unresolved; no resolver link, observed 2026-08-12T21:51:02.818697Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation d43c0c39-5dbc-47c5-b8d6-9a6f2d23b605 · outbound

This paper cites Contrastive Representation Learning for 3D Protein Structures.

Hashing for Protein Structure Similarity Search Contrastive Representation Learning for 3D Protein Structures

Reference 30

Resolution: unresolved; no resolver link, observed 2026-08-12T21:51:02.824662Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation bace76e8-fce6-44a5-9a3e-35ba5b38c09e · outbound

This paper cites How significant is a protein structure similarity with tm-score= 0.5? Bioinformatics, 26(7):889–895, 2010.

Hashing for Protein Structure Similarity Search How significant is a protein structure similarity with tm-score= 0.5? Bioinformatics, 26(7):889–895, 2010

Reference 31

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T21:51:02.982835Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 790b4d6f-d518-4f49-acd0-50d6630b181b · outbound

This paper cites The protein data bank.

Hashing for Protein Structure Similarity Search The protein data bank

Reference 32

Resolution: verified fuzzy; raw_fallback, observed 2026-08-12T21:51:02.964262Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Pith citing papers

No inbound Pith citation observations are available.