Paper Citation Record · LEDGER

Smooth $\%$MinMax: A Differentiable Relaxation for Codon Harmonization

As of 8 August 2026, this Paper Citation Record lists 45 of 45 outbound references and 0 inbound Pith citation observations for arXiv:2607.03881.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2607.03881 v1

Coverage vector

measured 45 of 45 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-07-11T23:16:55.083701Z

measured 45 of 45 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-08T06:32:00.761636+00:00

measured 0 of 0 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: cited_works

Reference resolution

45 of 45 outbound references displayed

verified exact1
verified fuzzy0
unresolved44
parse uncertain0
malformed identifier0
metadata mismatch0

External citation measurements

No source-named external measurement is stored.

Outbound references

Observation 9d7d312c-54e0-4fa8-bb69-aa0e9cfb2cf6 · outbound

This paper cites codon-usage bias.

Smooth $\%$MinMax: A Differentiable Relaxation for Codon Harmonization codon-usage bias

Reference 1

Resolution: unresolved; no resolver link, observed 2026-07-11T23:16:55.083701Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation b197e239-9a37-4bbf-a6b6-c86bd130f8e6 · outbound

This paper cites an unresolved cited work.

Smooth $\%$MinMax: A Differentiable Relaxation for Codon Harmonization Unresolved cited work

Reference 2

Resolution: unresolved; no resolver link, observed 2026-07-11T23:16:55.083701Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 1b075aef-e3cb-4860-9da9-72c1f0a8e05b · outbound

This paper cites Problem Setup for Synonymous-Codon Sequence Design Let 𝐴𝐴= (𝑛𝑛(1), … , 𝑛𝑛(𝑇𝑇)) denote an amino-acid sequence of length 𝑇𝑇.

Smooth $\%$MinMax: A Differentiable Relaxation for Codon Harmonization Problem Setup for Synonymous-Codon Sequence Design Let 𝐴𝐴= (𝑛𝑛(1), … , 𝑛𝑛(𝑇𝑇)) denote an amino-acid sequence of length 𝑇𝑇

Reference 3

Resolution: unresolved; no resolver link, observed 2026-07-11T23:16:55.083701Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation f9e86ccd-bc5c-422a-a470-fafc527d21b2 · outbound

This paper cites Error bars indicate the standard deviation across 20,070 human coding sequences.

Smooth $\%$MinMax: A Differentiable Relaxation for Codon Harmonization Error bars indicate the standard deviation across 20,070 human coding sequences

Reference 4

Resolution: unresolved; no resolver link, observed 2026-07-11T23:16:55.083701Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation bce21b6f-c231-401c-812f-e4fe1c6c45c3 · outbound

This paper cites an unresolved cited work.

Smooth $\%$MinMax: A Differentiable Relaxation for Codon Harmonization Unresolved cited work

Reference 5

Resolution: unresolved; no resolver link, observed 2026-07-11T23:16:55.083701Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation f643d427-c34b-4e80-b080-dad11f19190c · outbound

This paper cites an unresolved cited work.

Smooth $\%$MinMax: A Differentiable Relaxation for Codon Harmonization Unresolved cited work

Reference 6

Resolution: unresolved; no resolver link, observed 2026-07-11T23:16:55.083701Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 37bd3e7a-83d9-48e9-b1be-7e4c27107085 · outbound

This paper cites an unresolved cited work.

Smooth $\%$MinMax: A Differentiable Relaxation for Codon Harmonization Unresolved cited work

Reference 7

Resolution: unresolved; no resolver link, observed 2026-07-11T23:16:55.083701Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 3c78a046-48fa-43dc-8928-8ab69090f6ed · outbound

This paper cites Codon bias and heterologous protein expression.

Smooth $\%$MinMax: A Differentiable Relaxation for Codon Harmonization Codon bias and heterologous protein expression

Reference 8

Resolution: unresolved; no resolver link, observed 2026-07-11T23:16:55.083701Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 048ea0f5-87c2-4e8c-b626-9c73f82ddc4c · outbound

This paper cites E., Claassens, N.

Smooth $\%$MinMax: A Differentiable Relaxation for Codon Harmonization E., Claassens, N

Reference 9

Resolution: unresolved; no resolver link, observed 2026-07-11T23:16:55.083701Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 489bbdd4-9fbf-4fe6-8ff3-930a9757762a · outbound

This paper cites T., Udayasuriyan, V ., Bhadana, V.

Smooth $\%$MinMax: A Differentiable Relaxation for Codon Harmonization T., Udayasuriyan, V ., Bhadana, V

Reference 10

Resolution: unresolved; no resolver link, observed 2026-07-11T23:16:55.083701Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation ec8d8869-34ad-4971-a0e8-068fe6e88375 · outbound

This paper cites The selective advantage of synonymous codon usage bias in Salmonella.

Smooth $\%$MinMax: A Differentiable Relaxation for Codon Harmonization The selective advantage of synonymous codon usage bias in Salmonella

Reference 11

Resolution: unresolved; no resolver link, observed 2026-07-11T23:16:55.083701Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation b7c1c956-56e5-42b3-8f98-d77056898c33 · outbound

This paper cites Predicting synonymous codon usage and optimizing the heterologous gene for expression in E.

Smooth $\%$MinMax: A Differentiable Relaxation for Codon Harmonization Predicting synonymous codon usage and optimizing the heterologous gene for expression in E

Reference 12

Resolution: unresolved; no resolver link, observed 2026-07-11T23:16:55.083701Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 495a31b8-9349-4a15-a853-b11bdc64bdc5 · outbound

This paper cites V ., 14 Komar, A.

Smooth $\%$MinMax: A Differentiable Relaxation for Codon Harmonization V ., 14 Komar, A

Reference 13

Resolution: unresolved; no resolver link, observed 2026-07-11T23:16:55.083701Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation b6365e3d-f03d-458e-adb3-f8a4e8b87a5f · outbound

This paper cites A., Sharma, S., Sobott, F., Loenarz, C., Oppermann, U., Gileadi, O.

Smooth $\%$MinMax: A Differentiable Relaxation for Codon Harmonization A., Sharma, S., Sobott, F., Loenarz, C., Oppermann, U., Gileadi, O

Reference 14

Resolution: unresolved; no resolver link, observed 2026-07-11T23:16:55.083701Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation adf0e252-5154-465c-ba6e-cf267a6202ed · outbound

This paper cites B., Zhang, X., Ma, F.

Smooth $\%$MinMax: A Differentiable Relaxation for Codon Harmonization B., Zhang, X., Ma, F

Reference 15

Resolution: unresolved; no resolver link, observed 2026-07-11T23:16:55.083701Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 4642614b-9693-4dd5-8d8f-d170ce2f0f7d · outbound

This paper cites G., Leung, K.

Smooth $\%$MinMax: A Differentiable Relaxation for Codon Harmonization G., Leung, K

Reference 16

Resolution: unresolved; no resolver link, observed 2026-07-11T23:16:55.083701Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation a23872d1-3a49-4e68-b035-7b7107a8ca3b · outbound

This paper cites C., Chan, H.

Smooth $\%$MinMax: A Differentiable Relaxation for Codon Harmonization C., Chan, H

Reference 17

Resolution: unresolved; no resolver link, observed 2026-07-11T23:16:55.083701Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation f7a96bfb-7322-4a9c-88a2-3e0fb47eef99 · outbound

This paper cites I., Suzuki, T.

Smooth $\%$MinMax: A Differentiable Relaxation for Codon Harmonization I., Suzuki, T

Reference 18

Resolution: unresolved; no resolver link, observed 2026-07-11T23:16:55.083701Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 4e0292a2-043e-4113-a840-d8ac18cd1468 · outbound

This paper cites E., Claassens, N.

Smooth $\%$MinMax: A Differentiable Relaxation for Codon Harmonization E., Claassens, N

Reference 19

Resolution: unresolved; no resolver link, observed 2026-07-11T23:16:55.083701Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 12ccadef-47d5-4284-a94d-349d8ca6c5c9 · outbound

This paper cites F., Clark, P.

Smooth $\%$MinMax: A Differentiable Relaxation for Codon Harmonization F., Clark, P

Reference 20

Resolution: unresolved; no resolver link, observed 2026-07-11T23:16:55.083701Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 9cdf0a6a-e4a6-4135-a381-83a524e5e6a1 · outbound

This paper cites H., Dang, Y ., Zhou, Z., Wu, C., Zhao, F., Sachs, M.

Smooth $\%$MinMax: A Differentiable Relaxation for Codon Harmonization H., Dang, Y ., Zhou, Z., Wu, C., Zhao, F., Sachs, M

Reference 21

Resolution: unresolved; no resolver link, observed 2026-07-11T23:16:55.083701Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 83b34ec9-89ec-481e-9f5f-0601a4c20598 · outbound

This paper cites J., Kincaid, R.

Smooth $\%$MinMax: A Differentiable Relaxation for Codon Harmonization J., Kincaid, R

Reference 22

Resolution: unresolved; no resolver link, observed 2026-07-11T23:16:55.083701Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 3bf06c0f-b3a1-48d0-ac6d-6e8cf06779a3 · outbound

This paper cites M., Mease, R.

Smooth $\%$MinMax: A Differentiable Relaxation for Codon Harmonization M., Mease, R

Reference 23

Resolution: unresolved; no resolver link, observed 2026-07-11T23:16:55.083701Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation ea441cbd-634a-4f03-89d1-9221be79d5d7 · outbound

This paper cites J., Clark, P.

Smooth $\%$MinMax: A Differentiable Relaxation for Codon Harmonization J., Clark, P

Reference 24

Resolution: unresolved; no resolver link, observed 2026-07-11T23:16:55.083701Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation aa9f8b0e-fead-44b2-b5e3-285974fea25f · outbound

This paper cites an unresolved cited work.

Smooth $\%$MinMax: A Differentiable Relaxation for Codon Harmonization Unresolved cited work

Reference 25

Resolution: unresolved; no resolver link, observed 2026-07-11T23:16:55.083701Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 4bfbd1ff-6873-4bba-8b5d-c43510566b2d · outbound

This paper cites J., Siliakus, M.

Smooth $\%$MinMax: A Differentiable Relaxation for Codon Harmonization J., Siliakus, M

Reference 26

Resolution: unresolved; no resolver link, observed 2026-07-11T23:16:55.083701Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 4e316121-2fdc-47fa-8e33-53523442e9ab · outbound

This paper cites S., Goegebeur, S., Delmulle, T., De Mol, M.

Smooth $\%$MinMax: A Differentiable Relaxation for Codon Harmonization S., Goegebeur, S., Delmulle, T., De Mol, M

Reference 27

Resolution: unresolved; no resolver link, observed 2026-07-11T23:16:55.083701Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 0222d459-4187-4485-a753-983f0a266d5f · outbound

This paper cites an unresolved cited work.

Smooth $\%$MinMax: A Differentiable Relaxation for Codon Harmonization Unresolved cited work

Reference 28

Resolution: unresolved; no resolver link, observed 2026-07-11T23:16:55.083701Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 8347dee1-4c57-4e1a-b754-30ebe013cdde · outbound

This paper cites J., Lindner, A.

Smooth $\%$MinMax: A Differentiable Relaxation for Codon Harmonization J., Lindner, A

Reference 29

Resolution: unresolved; no resolver link, observed 2026-07-11T23:16:55.083701Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation b8fd7eb3-2000-4a01-9a07-d7d727e80748 · outbound

This paper cites Codon optimization with deep learning to enhance protein expression.

Smooth $\%$MinMax: A Differentiable Relaxation for Codon Harmonization Codon optimization with deep learning to enhance protein expression

Reference 30

Resolution: unresolved; no resolver link, observed 2026-07-11T23:16:55.083701Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 3a48fa35-85bd-401e-a1f3-61d1565431be · outbound

This paper cites ICOR: improving codon optimization with recurrent neural networks.

Smooth $\%$MinMax: A Differentiable Relaxation for Codon Harmonization ICOR: improving codon optimization with recurrent neural networks

Reference 31

Resolution: unresolved; no resolver link, observed 2026-07-11T23:16:55.083701Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 7b0262c6-53c7-48b8-9657-e8475dc2aa11 · outbound

This paper cites R., Yan, Y ., Agrawal, P., Waight, A.

Smooth $\%$MinMax: A Differentiable Relaxation for Codon Harmonization R., Yan, Y ., Agrawal, P., Waight, A

Reference 32

Resolution: unresolved; no resolver link, observed 2026-07-11T23:16:55.083701Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation c3c56aca-c6ce-4025-9b6e-6e3c8d9f6c64 · outbound

This paper cites an unresolved cited work.

Smooth $\%$MinMax: A Differentiable Relaxation for Codon Harmonization Unresolved cited work

Reference 33

Resolution: unresolved; no resolver link, observed 2026-07-11T23:16:55.083701Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 2f8a2d42-6f15-4439-870c-e91457386f05 · outbound

This paper cites CodonBERT: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.

Smooth $\%$MinMax: A Differentiable Relaxation for Codon Harmonization CodonBERT: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism

Reference 34

Resolution: unresolved; no resolver link, observed 2026-07-11T23:16:55.083701Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 292d31a9-5160-43c1-9c46-56ca53b30781 · outbound

This paper cites High-Codon: a deep learning-based codon optimization tool for enhanced heterologous protein expression in Escherichia coli.

Smooth $\%$MinMax: A Differentiable Relaxation for Codon Harmonization High-Codon: a deep learning-based codon optimization tool for enhanced heterologous protein expression in Escherichia coli

Reference 35

Resolution: verified exact; doi, observed 2026-07-11T23:18:20.614730Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 667bc552-132e-45bc-bd89-97bed2fbe74c · outbound

This paper cites M., Li, W.

Smooth $\%$MinMax: A Differentiable Relaxation for Codon Harmonization M., Li, W

Reference 36

Resolution: unresolved; no resolver link, observed 2026-07-11T23:16:55.083701Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation bce28474-1fbb-43a4-ad59-93446550302a · outbound

This paper cites C., Jahn, D.

Smooth $\%$MinMax: A Differentiable Relaxation for Codon Harmonization C., Jahn, D

Reference 37

Resolution: unresolved; no resolver link, observed 2026-07-11T23:16:55.083701Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 0f3a0731-e2f1-4481-bead-389821adfe69 · outbound

This paper cites G., Garcia-Vallve, S.

Smooth $\%$MinMax: A Differentiable Relaxation for Codon Harmonization G., Garcia-Vallve, S

Reference 38

Resolution: unresolved; no resolver link, observed 2026-07-11T23:16:55.083701Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation ef2dca3c-7886-40da-b9ec-dee7485c86cb · outbound

This paper cites OPTIMIZER: a web server for optimizing the codon usage of DNA sequences.

Smooth $\%$MinMax: A Differentiable Relaxation for Codon Harmonization OPTIMIZER: a web server for optimizing the codon usage of DNA sequences

Reference 39

Resolution: unresolved; no resolver link, observed 2026-07-11T23:16:55.083701Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 4221fed6-b1e7-477a-95b8-03d5141a12fb · outbound

This paper cites A., Park, S.

Smooth $\%$MinMax: A Differentiable Relaxation for Codon Harmonization A., Park, S

Reference 40

Resolution: unresolved; no resolver link, observed 2026-07-11T23:16:55.083701Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation ddaf1f97-eb56-4f1c-8a6d-9bfe7d3ea6ce · outbound

This paper cites an unresolved cited work.

Smooth $\%$MinMax: A Differentiable Relaxation for Codon Harmonization Unresolved cited work

Reference 41

Resolution: unresolved; no resolver link, observed 2026-07-11T23:16:55.083701Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 825a7d58-a25e-4601-9159-fb7ccde20164 · outbound

This paper cites H., Zhang, Y ., Huang, L.

Smooth $\%$MinMax: A Differentiable Relaxation for Codon Harmonization H., Zhang, Y ., Huang, L

Reference 42

Resolution: unresolved; no resolver link, observed 2026-07-11T23:16:55.083701Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 01e7a65b-0075-4f04-8b82-86789f31129a · outbound

This paper cites E., LaDue, M., Kumar, V ., Davis, W., Galda, A.

Smooth $\%$MinMax: A Differentiable Relaxation for Codon Harmonization E., LaDue, M., Kumar, V ., Davis, W., Galda, A

Reference 43

Resolution: unresolved; no resolver link, observed 2026-07-11T23:16:55.083701Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation d0564878-8ffc-44c4-a9f1-6ec1a2a3dd09 · outbound

This paper cites DeepCodon: a deep learning codon-optimization model to enhance protein expression.

Smooth $\%$MinMax: A Differentiable Relaxation for Codon Harmonization DeepCodon: a deep learning codon-optimization model to enhance protein expression

Reference 44

Resolution: unresolved; no resolver link, observed 2026-07-11T23:16:55.083701Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 9b98ca26-3c69-43e6-a3e9-6177bb871695 · outbound

This paper cites A New Deep-learning-Based Approach For mRNA Optimization: High Fidelity, Computation Efficiency, and Multiple Optimization Factors.

Smooth $\%$MinMax: A Differentiable Relaxation for Codon Harmonization A New Deep-learning-Based Approach For mRNA Optimization: High Fidelity, Computation Efficiency, and Multiple Optimization Factors

Reference 45

Resolution: unresolved; no resolver link, observed 2026-07-11T23:16:55.083701Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Pith citing papers

No inbound Pith citation observations are available.