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Paper Citation Record · LEDGER

Do Protein Transformers Have Biological Intelligence?

As of 8 August 2026, this Paper Citation Record lists 76 of 76 outbound references and 0 inbound Pith citation observations for arXiv:2506.06701.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2506.06701 v1

Coverage vector

measured 76 of 76 reference resolution

Typed states for the displayed outbound observations.

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measured 76 of 76 standing notices

One-hop event checks from named stored sources.

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measured 0 of 0 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: cited_works

Reference resolution

76 of 76 outbound references displayed

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External citation measurements

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Outbound references

Observation d18c9e46-f515-4b33-bad7-a71249350969 · outbound

This paper cites an unresolved cited work.

Do Protein Transformers Have Biological Intelligence? Unresolved cited work

Reference 1

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Observation b8ec6bbd-a370-4561-9399-c9fde4f23ddc · outbound

This paper cites Unified rational protein engineering with sequence-based deep representation learn- ing.

Do Protein Transformers Have Biological Intelligence? Unified rational protein engineering with sequence-based deep representation learn- ing

Reference 2

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Observation 33e65642-fc9d-493c-b23c-c354ba58e121 · outbound

This paper cites Jaakkola.

Do Protein Transformers Have Biological Intelligence? Jaakkola

Reference 3

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Observation cf5fea47-0ef7-4113-9792-bbd8b2b8f70d · outbound

This paper cites Vivit: A video vision transformer.

Do Protein Transformers Have Biological Intelligence? Vivit: A video vision transformer

Reference 4

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Observation 186240e5-e3ae-4e76-8b30-d80c12f2d50e · outbound

This paper cites Layer Normalization.

Do Protein Transformers Have Biological Intelligence? Layer Normalization

Reference 5

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Observation 03f2ab7a-eb79-4e9e-90c2-4c7ab59bd05e · outbound

This paper cites Accurate prediction of protein structures and interactions using a three-track neural network.

Do Protein Transformers Have Biological Intelligence? Accurate prediction of protein structures and interactions using a three-track neural network

Reference 6

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Observation 60a8b682-8bcf-4bb4-854a-4e7a0a08d000 · outbound

This paper cites Beit: BERT pre-training of image transformers.

Do Protein Transformers Have Biological Intelligence? Beit: BERT pre-training of image transformers

Reference 7

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Observation 9435c683-9846-480c-a686-7fe21afefb4e · outbound

This paper cites GAM: explainable visual similarity and classification via gradient ac- tivation maps.

Do Protein Transformers Have Biological Intelligence? GAM: explainable visual similarity and classification via gradient ac- tivation maps

Reference 8

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Observation 1fbed2a2-dabf-44b3-86e9-29fb54b53edb · outbound

This paper cites Emerging properties in self-supervised vision transformers.

Do Protein Transformers Have Biological Intelligence? Emerging properties in self-supervised vision transformers

Reference 9

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Observation 28cb1c92-704d-42f8-81d5-a008acd4a187 · outbound

This paper cites Balasubramanian.

Do Protein Transformers Have Biological Intelligence? Balasubramanian

Reference 10

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Observation 4cd6d3cf-ace2-494d-9fe8-4d4e51c9f3af · outbound

This paper cites Generic attention-model explainability for interpret- ing bi-modal and encoder-decoder transformers.

Do Protein Transformers Have Biological Intelligence? Generic attention-model explainability for interpret- ing bi-modal and encoder-decoder transformers

Reference 11

Resolution
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Observation a3827541-5bba-42d4-b04f-c584a64ddf51 · outbound

This paper cites Transformer interpretability beyond attention visual- ization.

Do Protein Transformers Have Biological Intelligence? Transformer interpretability beyond attention visual- ization

Reference 12

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Observation 89d1923e-82e9-4925-a193-d0ecd45a6540 · outbound

This paper cites Explain the explainer: Interpreting model-agnostic counterfactual explanations of a deep re- inforcement learning agent.

Do Protein Transformers Have Biological Intelligence? Explain the explainer: Interpreting model-agnostic counterfactual explanations of a deep re- inforcement learning agent

Reference 13

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Observation 6f22d23a-cb14-46b0-b9da-abf6f66c7562 · outbound

This paper cites GREASE: Generate Factual and Counterfactual Explanations for GNN-based Recommendations.

Do Protein Transformers Have Biological Intelligence? GREASE: Generate Factual and Counterfactual Explanations for GNN-based Recommendations

Reference 14

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Observation e08ec746-4c61-4536-90f2-76a4065d9937 · outbound

This paper cites The dark side of explanations: Poisoning recommender systems with counterfactual examples.

Do Protein Transformers Have Biological Intelligence? The dark side of explanations: Poisoning recommender systems with counterfactual examples

Reference 15

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Observation 70c7f453-6d5a-4b9b-bb55-3405a3a211f1 · outbound

This paper cites Bonemet: An open large-scale multi-modal murine dataset for breast cancer bone metastasis diagnosis and prognosis.

Do Protein Transformers Have Biological Intelligence? Bonemet: An open large-scale multi-modal murine dataset for breast cancer bone metastasis diagnosis and prognosis

Reference 16

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Observation 7853052a-fb9d-477f-bb55-37b4a8c5f56f · outbound

This paper cites Electra: Pre- training text encoders as discriminators rather than generators.

Do Protein Transformers Have Biological Intelligence? Electra: Pre- training text encoders as discriminators rather than generators

Reference 17

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Observation 891e89bb-e35c-475a-868c-04c7fbe5d886 · outbound

This paper cites Real time image saliency for black box classifiers.

Do Protein Transformers Have Biological Intelligence? Real time image saliency for black box classifiers

Reference 18

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Observation f9f23ffb-4be1-4059-815d-c4042c688c9c · outbound

This paper cites Ramaswamy.

Do Protein Transformers Have Biological Intelligence? Ramaswamy

Reference 19

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Do Protein Transformers Have Biological Intelligence? BERT: pre-training of deep bidirectional transformers for language understanding

Reference 20

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This paper cites An image is worth 16x16 words: Transformers for image recognition at scale.

Do Protein Transformers Have Biological Intelligence? An image is worth 16x16 words: Transformers for image recognition at scale

Reference 21

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Observation 6e1c9d14-9e3c-4fbe-a3d9-2aa6af9b3f4c · outbound

This paper cites Muscle: a multiple sequence alignment method with reduced time and space complexity.

Do Protein Transformers Have Biological Intelligence? Muscle: a multiple sequence alignment method with reduced time and space complexity

Reference 22

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This paper cites Prottrans: To- ward understanding the language of life through self-supervised learning.IEEE transactions on pattern analysis and machine intelligence, 44(10):7112–7127, 2021.

Do Protein Transformers Have Biological Intelligence? Prottrans: To- ward understanding the language of life through self-supervised learning.IEEE transactions on pattern analysis and machine intelligence, 44(10):7112–7127, 2021

Reference 23

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Observation eb200642-18c0-4f66-a597-77e1ce65903c · outbound

This paper cites Backward recursive class activation map refinement for high resolution saliency map.

Do Protein Transformers Have Biological Intelligence? Backward recursive class activation map refinement for high resolution saliency map

Reference 24

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Observation 5fb0fb35-4694-46e5-8187-a919f2a6513a · outbound

This paper cites Protein complex prediction with alphafold-multimer.

Do Protein Transformers Have Biological Intelligence? Protein complex prediction with alphafold-multimer

Reference 25

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This paper cites Multiscale vision transformers.

Do Protein Transformers Have Biological Intelligence? Multiscale vision transformers

Reference 26

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Observation cee4af00-09e3-432e-a5cb-bd7ae4a03b76 · outbound

This paper cites Pfam: the protein families database.

Do Protein Transformers Have Biological Intelligence? Pfam: the protein families database

Reference 27

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This paper cites Understanding deep networks via extremal perturbations and smooth masks.

Do Protein Transformers Have Biological Intelligence? Understanding deep networks via extremal perturbations and smooth masks

Reference 28

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This paper cites Fong and Andrea Vedaldi.

Do Protein Transformers Have Biological Intelligence? Fong and Andrea Vedaldi

Reference 29

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Observation fda93392-dba5-4317-88a9-08dc0ceec842 · outbound

This paper cites Axiom- based grad-cam: Towards accurate visualization and explanation of cnns.

Do Protein Transformers Have Biological Intelligence? Axiom- based grad-cam: Towards accurate visualization and explanation of cnns

Reference 30

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This paper cites Girshick.

Do Protein Transformers Have Biological Intelligence? Girshick

Reference 31

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Source-reported events for the cited work

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This paper cites Deep residual learning for image recognition.

Do Protein Transformers Have Biological Intelligence? Deep residual learning for image recognition

Reference 32

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Source-reported events for the cited work

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This paper cites Learning inverse folding from millions of predicted structures.

Do Protein Transformers Have Biological Intelligence? Learning inverse folding from millions of predicted structures

Reference 33

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Observation 071c5446-6165-46eb-9a55-e5a932d3df6d · outbound

This paper cites Exploring evolution-aware & -free protein language models as protein function predictors.

Do Protein Transformers Have Biological Intelligence? Exploring evolution-aware & -free protein language models as protein function predictors

Reference 34

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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

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Observation 3bd1ede6-45b1-486f-b429-917f868dc43b · outbound

This paper cites Exploring evolution-aware &-free protein language models as protein function predictors.

Do Protein Transformers Have Biological Intelligence? Exploring evolution-aware &-free protein language models as protein function predictors

Reference 35

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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

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Observation 0b127913-10d0-4c77-bc97-f417e0af739e · outbound

This paper cites Deep networks with stochastic depth.

Do Protein Transformers Have Biological Intelligence? Deep networks with stochastic depth

Reference 36

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verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.934395Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

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Observation ecc77feb-9764-46cf-b6ee-cf27b2a0bf5f · outbound

This paper cites an unresolved cited work.

Do Protein Transformers Have Biological Intelligence? Unresolved cited work

Reference 37

Resolution
unresolved
raw_fallback, observed 2026-08-07T05:57:41.916972Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T05:57:35.693170Z digest=sha256:e54a4070509bf755e5b7500790100b41ef281fad8e3141dad3b927d62553f0f2

Observation 283584a5-f5d5-4394-ad01-cd3bff72da33 · outbound

This paper cites Lay- ercam: Exploring hierarchical class activation maps for localization.

Do Protein Transformers Have Biological Intelligence? Lay- ercam: Exploring hierarchical class activation maps for localization

Reference 38

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.900247Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T05:57:35.847267Z digest=sha256:ac96764240f64f40f183ff26dc3c867c41d0e991c0c09e6a0e5c202120128399

Observation 56ee7267-7edc-4742-bc31-5ba033501ca6 · outbound

This paper cites Highly accurate protein structure prediction with alphafold.

Do Protein Transformers Have Biological Intelligence? Highly accurate protein structure prediction with alphafold

Reference 39

Resolution
unresolved
no resolver link, observed 2026-08-07T05:57:36.008304Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-07T05:57:36.008304Z digest=sha256:bc443e705927ada639eb096be977488e636ee1dbe70dc4af3b7d06096d98ec57

Observation f68b1fc1-7a82-40a3-8196-1b63933af045 · outbound

This paper cites Cai, James Wexler, Fernanda B.

Do Protein Transformers Have Biological Intelligence? Cai, James Wexler, Fernanda B

Reference 40

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.873741Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T05:57:36.168117Z digest=sha256:fff3a590a2e1b5c65311252866cf375017af34bd818d664805c49cbc8fed3cce

Observation 8f6991d2-7f80-4e5c-bdab-e96e4630cb8e · outbound

This paper cites Development of a tsr-based method for protein 3-d structural comparison with its applications to protein classification and motif discovery.

Do Protein Transformers Have Biological Intelligence? Development of a tsr-based method for protein 3-d structural comparison with its applications to protein classification and motif discovery

Reference 41

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.857069Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T05:57:36.321316Z digest=sha256:fdb7e39dcbceecc78dee3152ba4745134d80d5187f6c697be749b5969a987d3c

Observation 504bf1bc-3043-4e82-bd5a-bf91f579abf3 · outbound

This paper cites Mmst-vit: Climate change-aware crop yield prediction via multi-modal spatial-temporal vision trans- former.

Do Protein Transformers Have Biological Intelligence? Mmst-vit: Climate change-aware crop yield prediction via multi-modal spatial-temporal vision trans- former

Reference 42

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.841656Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T05:57:36.455800Z digest=sha256:7236a7c41f6d203a78bba9d6976b8e920f28f74f8a7072eaf43ec9b8f7ae37d7

Observation 899e5712-f219-4625-84b5-e9d32a3c4a5c · outbound

This paper cites An open and large-scale dataset for multi-modal climate change-aware crop yield predic- tions.

Do Protein Transformers Have Biological Intelligence? An open and large-scale dataset for multi-modal climate change-aware crop yield predic- tions

Reference 43

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.825397Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T05:57:36.647741Z digest=sha256:e7f6248a65fe7f9a508a5c3f12c3a9d44881797305712b7951a20df2e7b12d03

Observation 9e32778c-fded-43f2-884b-bd844e888834 · outbound

This paper cites Towards robust vision trans- former via masked adaptive ensemble.

Do Protein Transformers Have Biological Intelligence? Towards robust vision trans- former via masked adaptive ensemble

Reference 44

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.809374Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T05:57:36.793509Z digest=sha256:0c91f1f0d3355179f089b4c8a19b0d9894d18178b7976a7f17d4e2546f50067d

Observation fc194084-1cc3-41c2-8497-e1a5344e863a · outbound

This paper cites Comprehensive transformer-based model architecture for real-world storm predic- tion.

Do Protein Transformers Have Biological Intelligence? Comprehensive transformer-based model architecture for real-world storm predic- tion

Reference 45

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.793992Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T05:57:36.935367Z digest=sha256:3c6e832c1b0e767374171d23d1c49de7015626add656356e7c0aa09cb04c56c0

Observation e8ad086c-48f1-4f9d-a5c5-454f441c1e03 · outbound

This paper cites Swin transformer: Hierarchical vision transformer using shifted windows.

Do Protein Transformers Have Biological Intelligence? Swin transformer: Hierarchical vision transformer using shifted windows

Reference 46

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.779219Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T05:57:37.069131Z digest=sha256:f7dd88359e1c84461708e33b2f653efa7e3af3efc56e055fa5d761deb61275f4

Observation e06838d4-5bd4-4905-9037-bb244dc838f6 · outbound

This paper cites Sgdr: Stochastic gradient descent with warm restarts.

Do Protein Transformers Have Biological Intelligence? Sgdr: Stochastic gradient descent with warm restarts

Reference 47

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.763420Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T05:57:37.238192Z digest=sha256:4b59d2cede5e527c91b1a21459b720b78039644b17b30fa3b7940d2b748a39b7

Observation 8cae4fba-e2cc-44be-931d-8cd8f238d464 · outbound

This paper cites Decoupled weight decay regularization.

Do Protein Transformers Have Biological Intelligence? Decoupled weight decay regularization

Reference 48

Resolution
unresolved
no resolver link, observed 2026-08-07T05:57:37.346467Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-07T05:57:37.346467Z digest=sha256:b88e7db6939022511df47bf8b9d43e40a5972d10366749cd8a7c53ccbb1e4eeb

Observation 4262542d-1011-4386-86b2-7cd0334e3517 · outbound

This paper cites Lundberg and Su-In Lee.

Do Protein Transformers Have Biological Intelligence? Lundberg and Su-In Lee

Reference 49

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.735342Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T05:57:37.456424Z digest=sha256:305f41c639d62cd57fea191bee0b0cfbd5c310596d1239cc9d64818391a10103

Observation a7494afb-7373-44b2-a258-320b7f883394 · outbound

This paper cites Antigen- specific antibody design and optimization with diffusion-based generative models for protein structures.

Do Protein Transformers Have Biological Intelligence? Antigen- specific antibody design and optimization with diffusion-based generative models for protein structures

Reference 50

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.720237Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T05:57:37.560130Z digest=sha256:f5dcd5226fecbbdfde9479311adeb5848b42c8d72b3463e63a9785481c803f9a

Observation 0290c4fc-804a-457d-80c9-67d80de7b4da · outbound

This paper cites Visualizing deep convolutional neural networks using natural pre-images.

Do Protein Transformers Have Biological Intelligence? Visualizing deep convolutional neural networks using natural pre-images

Reference 51

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.705458Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T05:57:37.643365Z digest=sha256:196e93b0e1f3830bf571f73b961a8a9f36d933dfd2a9284cf39f1b668d40badb

Observation e658bf7d-5b94-44a1-8088-eccb0da84b27 · outbound

This paper cites The comprehensive antibiotic resistance database.

Do Protein Transformers Have Biological Intelligence? The comprehensive antibiotic resistance database

Reference 52

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.689862Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T05:57:37.773792Z digest=sha256:343f9730e44f8a13a713a1bbf1604ed153e2e5a05aa8476eccd346d3548e3ecf

Observation cae86fe3-422b-410a-ac92-498ccfc3341d · outbound

This paper cites Language models enable zero-shot prediction of the effects of mutations on protein function.

Do Protein Transformers Have Biological Intelligence? Language models enable zero-shot prediction of the effects of mutations on protein function

Reference 53

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.674831Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T05:57:37.883874Z digest=sha256:a40f1e3e540a99a3a34e01114df5fec2f1585d92b6034acf44b5779e597d67e1

Observation b639c873-1d1f-4ddc-a3b5-e16205b976a4 · outbound

This paper cites Protein data bank (pdb), 2023.

Do Protein Transformers Have Biological Intelligence? Protein data bank (pdb), 2023

Reference 54

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.659193Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T05:57:37.958655Z digest=sha256:aad2df04db6985d964c39c637251c8bf52ee1e0ff3371b370ab05c5827a58916

Observation 1181742e-b13e-421b-9a55-b90e766f92a3 · outbound

This paper cites RISE: randomized input sampling for explanation of black-box models.

Do Protein Transformers Have Biological Intelligence? RISE: randomized input sampling for explanation of black-box models

Reference 55

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.643235Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T05:57:38.066807Z digest=sha256:445e64bd9b839fc37f7dfec6e6f0570611ff0a717c894b56e36f2a59d96e314b

Observation ca9b80fd-8ef9-44b6-9c6e-0ac2b2ab7b2a · outbound

This paper cites Evaluating protein transfer learning with tape.

Do Protein Transformers Have Biological Intelligence? Evaluating protein transfer learning with tape

Reference 56

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.628164Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T05:57:38.142169Z digest=sha256:69c817e02c0816dfdc66e9868241f6ed38372828d2fc0d960e404005202ece1b

Observation 686d88a5-98ee-4dba-accf-0d65b20f428d · outbound

This paper cites Canny, Pieter Abbeel, Tom Sercu, and Alexander Rives.

Do Protein Transformers Have Biological Intelligence? Canny, Pieter Abbeel, Tom Sercu, and Alexander Rives

Reference 57

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.610461Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T05:57:38.238574Z digest=sha256:546be3c2a53dcb55e9f070a9c96f095f79a1823731fc8162b7bdb8f4e79d99f6

Observation 300652dd-e975-40af-a283-1e366c03feee · outbound

This paper cites Trans- former protein language models are unsupervised structure learners.

Do Protein Transformers Have Biological Intelligence? Trans- former protein language models are unsupervised structure learners

Reference 58

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.595527Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T05:57:38.352073Z digest=sha256:bb658fc9485c83e6f1ec0ca20f9a51b888ec9d9c7720ead75a17ab7b85c35377

Observation fead9bd7-6ff2-454d-b335-92498d7516de · outbound

This paper cites Deep generative models of genetic variation capture the effects of mutations.

Do Protein Transformers Have Biological Intelligence? Deep generative models of genetic variation capture the effects of mutations

Reference 59

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.579645Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T05:57:38.448250Z digest=sha256:c4ffd63c63ad02810c629f45cbd7e7741a27d214c2f33c6cfce119a4bf37cd18

Observation 0cad6645-2de9-4d2d-b7d5-8006ea375a1b · outbound

This paper cites Biological structure and function emerge from scaling unsupervised learning to 250 million protein sequences.

Do Protein Transformers Have Biological Intelligence? Biological structure and function emerge from scaling unsupervised learning to 250 million protein sequences

Reference 60

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.560612Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T05:57:38.568098Z digest=sha256:24641a4ea6e405227f27564796675b0868851f8d692ba7b9c9530f485a83e6f8

Observation 6ab03516-f970-4fe2-845c-f9ac4e37f8dd · outbound

This paper cites High-resolution image synthesis with latent diffusion models.

Do Protein Transformers Have Biological Intelligence? High-resolution image synthesis with latent diffusion models

Reference 61

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.543357Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T05:57:38.664570Z digest=sha256:ad319bc015c27adf590b0ecbdb4e9440a507c7d20e233c86962446126d92c66c

Observation d700e65c-c481-4c35-9384-d46c1c764343 · outbound

This paper cites Selvaraju, Michael Cogswell, Abhishek Das, Ramakrishna Vedantam, Devi Parikh, and Dhruv Batra.

Do Protein Transformers Have Biological Intelligence? Selvaraju, Michael Cogswell, Abhishek Das, Ramakrishna Vedantam, Devi Parikh, and Dhruv Batra

Reference 62

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.526195Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T05:57:38.775160Z digest=sha256:8b177ea0188f195c42565f81c536e004b2e8eda0c42ff6a2be94cd8fe96c3a13

Observation 1175002c-6a24-45a0-b973-333d83b09d0a · outbound

This paper cites Deep inside convolutional net- works: Visualising image classification models and saliency maps.

Do Protein Transformers Have Biological Intelligence? Deep inside convolutional net- works: Visualising image classification models and saliency maps

Reference 63

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.509145Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T05:57:38.876176Z digest=sha256:3f7703e86cd5953fa7bcdd400a33511fb9698e5f6b756f782231735c41f3c6b6

Observation 6b3a760e-f701-4f49-acd1-a6ea765ecd84 · outbound

This paper cites Full-gradient representation for neural network visual- ization.

Do Protein Transformers Have Biological Intelligence? Full-gradient representation for neural network visual- ization

Reference 64

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.492996Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T05:57:38.943197Z digest=sha256:6f7e04c47c4edd420826845615188052e19eacab443cd6d55ce28386f28a0da6

Observation b2d69b43-89d5-4c3e-a4e4-394f052f17f8 · outbound

This paper cites Axiomatic attribution for deep networks.

Do Protein Transformers Have Biological Intelligence? Axiomatic attribution for deep networks

Reference 65

Resolution
unresolved
no resolver link, observed 2026-08-07T05:57:39.021252Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-07T05:57:39.021252Z digest=sha256:9b132dbb9916a741ff9f42f0d4be8df5fcb0684c021a096e7d08f01d540938df

Observation 9e70d12c-5054-4e77-a07e-6ede4df93c8f · outbound

This paper cites Re- thinking the inception architecture for computer vision.

Do Protein Transformers Have Biological Intelligence? Re- thinking the inception architecture for computer vision

Reference 66

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.396937Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T05:57:39.101129Z digest=sha256:7b8553d7eb21d752d8ff087dc816e8cac8a7901e8cd0006b4566afbc65abd80d

Observation f4664a95-fd55-4235-80ca-1f563ccb65a7 · outbound

This paper cites Training data-efficient image transformers & distillation through attention.

Do Protein Transformers Have Biological Intelligence? Training data-efficient image transformers & distillation through attention

Reference 67

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.376354Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T05:57:39.177243Z digest=sha256:131d928239dc34ac003b723d7a7fb31ea9ea2dd3182aadfa7f1816956079117d

Observation 99271eaa-d27e-4777-829b-683da062391a · outbound

This paper cites Gomez, Lukasz Kaiser, and Illia Polosukhin.

Do Protein Transformers Have Biological Intelligence? Gomez, Lukasz Kaiser, and Illia Polosukhin

Reference 68

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.358972Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T05:57:39.266454Z digest=sha256:2366b55831688fab12bfcd859e0166594e780d89aa47a14ba3efeca01b3cdf6b

Observation 8bce1e96-11c6-4794-8adf-a242ef2107a3 · outbound

This paper cites Analyzing multi- head self-attention: Specialized heads do the heavy lifting, the rest can be pruned.

Do Protein Transformers Have Biological Intelligence? Analyzing multi- head self-attention: Specialized heads do the heavy lifting, the rest can be pruned

Reference 69

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.337851Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T05:57:39.417225Z digest=sha256:d3d410b1f8489b45099dc638e0864d54df396555f4bf9459c1ad3113f99b9fd0

Observation 1041fac2-e071-44c1-bf00-fa1409dd71e8 · outbound

This paper cites Score-cam: Score-weighted visual explanations for convolutional neural networks.

Do Protein Transformers Have Biological Intelligence? Score-cam: Score-weighted visual explanations for convolutional neural networks

Reference 70

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.322203Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T05:57:39.590352Z digest=sha256:7194891265a4b1a325a97205bd43e454cfb0be3125ea5759fcae604f1cc7c32b

Observation c5b1b9e6-3201-4ac1-809f-fef677bc5a19 · outbound

This paper cites Pyramid vision transformer: A versatile backbone for dense prediction without convolutions.

Do Protein Transformers Have Biological Intelligence? Pyramid vision transformer: A versatile backbone for dense prediction without convolutions

Reference 71

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.304158Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T05:57:39.707866Z digest=sha256:98d8fca22faf1a7bf83b37a1e8cf1ff95aeaa0d442e07898e2d5e0dc6b508d90

Observation 78802d70-2c6a-46d0-ae3c-eb07d40bc234 · outbound

This paper cites an unresolved cited work.

Do Protein Transformers Have Biological Intelligence? Unresolved cited work

Reference 72

Resolution
unresolved
raw_fallback, observed 2026-08-07T05:57:41.287555Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T05:57:39.918531Z digest=sha256:7bf4f4146eea394112c3916bca02a7b9eadcba8888fe342375a5495ccfed2ce1

Observation f8075b43-9848-4e94-b344-a4e7c94ede81 · outbound

This paper cites Zeiler and Rob Fergus.

Do Protein Transformers Have Biological Intelligence? Zeiler and Rob Fergus

Reference 73

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.267459Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T05:57:40.095902Z digest=sha256:a0471bdbf3c9680fffd426cbc2f7d632ee463333789eb8072770cec62bb08fbb

Observation 6598eed1-0d09-4a48-b5aa-862998a50888 · outbound

This paper cites Tm-align: a protein structure alignment algorithm based on the tm-score.

Do Protein Transformers Have Biological Intelligence? Tm-align: a protein structure alignment algorithm based on the tm-score

Reference 74

Resolution
unresolved
no resolver link, observed 2026-08-07T05:57:40.222195Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-07T05:57:40.222195Z digest=sha256:b25627c28e1e9a25f7af9bde02ff5e5bf62309a4f3b40dbeec4a8f90a2bdd169

Observation 46ef4934-f632-4580-9705-0a73514e62be · outbound

This paper cites Learning deep features for discriminative localization.

Do Protein Transformers Have Biological Intelligence? Learning deep features for discriminative localization

Reference 75

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.119036Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T05:57:40.395764Z digest=sha256:7a2b74ba3385c64f3ba170cbd53c39e4d410f0769803e2621b413512878461bd

Observation 6afb8fcf-ef0a-4542-a936-0a7bf27a6aab · outbound

This paper cites residue number.

Do Protein Transformers Have Biological Intelligence? residue number

Reference 192

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:40.870533Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

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Pith citing papers

No inbound Pith citation observations are available.