Paper Citation Record · LEDGER

Structure-Informed Multiple Sequence Alignment: A Formal Model and Hardness Results

As of 19 August 2026, this Paper Citation Record lists 18 of 18 outbound references and 0 inbound Pith citation observations for arXiv:2606.02408.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2606.02408 v1

Coverage vector

measured 18 of 18 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-06-28T11:40:24.307270Z

measured 18 of 18 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-19T06:32:44.657259+00:00

measured 0 of 0 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: cited_works

Reference resolution

18 of 18 outbound references displayed

verified exact0
verified fuzzy0
unresolved18
parse uncertain0
malformed identifier0
metadata mismatch0

External citation measurements

No source-named external measurement is stored.

Outbound references

Observation 6978e930-d21a-4116-bb92-404284e06e77 · outbound

This paper cites Multiple sequence alignment modeling: methods and applications.Briefings in Bioinformatics, 17(6):1009–1023, 2016.

Structure-Informed Multiple Sequence Alignment: A Formal Model and Hardness Results Multiple sequence alignment modeling: methods and applications.Briefings in Bioinformatics, 17(6):1009–1023, 2016

Reference 1

Resolution: unresolved; no resolver link, observed 2026-06-28T11:40:24.307270Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation f575a6c7-b57e-4126-84c7-85d32944aa28 · outbound

This paper cites Developments in algorithms for sequence alignment: A review.Biomolecules, 12(4):546, 2022.

Structure-Informed Multiple Sequence Alignment: A Formal Model and Hardness Results Developments in algorithms for sequence alignment: A review.Biomolecules, 12(4):546, 2022

Reference 2

Resolution: unresolved; no resolver link, observed 2026-06-28T11:40:24.307270Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 57104bb2-1355-4720-b25f-b1c9f12893e8 · outbound

This paper cites Revisiting evaluation of multiple sequence alignment methods.

Structure-Informed Multiple Sequence Alignment: A Formal Model and Hardness Results Revisiting evaluation of multiple sequence alignment methods

Reference 3

Resolution: unresolved; no resolver link, observed 2026-06-28T11:40:24.307270Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 29716af9-0b61-4c23-9fa5-b23d4a0869f8 · outbound

This paper cites Cambridge University Press, 1998.

Structure-Informed Multiple Sequence Alignment: A Formal Model and Hardness Results Cambridge University Press, 1998

Reference 4

Resolution: unresolved; no resolver link, observed 2026-06-28T11:40:24.307270Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation fee63c82-9d53-449e-bb11-50db61ad46f9 · outbound

This paper cites An improved algorithm for matching biological sequences.Journal of Molecular Biology, 162(3):705–708, 1982.

Structure-Informed Multiple Sequence Alignment: A Formal Model and Hardness Results An improved algorithm for matching biological sequences.Journal of Molecular Biology, 162(3):705–708, 1982

Reference 5

Resolution: unresolved; no resolver link, observed 2026-06-28T11:40:24.307270Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 175071ca-8fb0-4a1f-a95e-424cf06dfe88 · outbound

This paper cites Needleman and Christian D.

Structure-Informed Multiple Sequence Alignment: A Formal Model and Hardness Results Needleman and Christian D

Reference 6

Resolution: unresolved; no resolver link, observed 2026-06-28T11:40:24.307270Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 2ce444af-df8e-4301-810b-930f4b4b460a · outbound

This paper cites an unresolved cited work.

Structure-Informed Multiple Sequence Alignment: A Formal Model and Hardness Results Unresolved cited work

Reference 7

Resolution: unresolved; no resolver link, observed 2026-06-28T11:40:24.307270Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 4d81b02b-b956-43dc-9448-b80459e741d1 · outbound

This paper cites On the complexity of multiple sequence alignment.

Structure-Informed Multiple Sequence Alignment: A Formal Model and Hardness Results On the complexity of multiple sequence alignment

Reference 8

Resolution: unresolved; no resolver link, observed 2026-06-28T11:40:24.307270Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation a13886dd-7d8b-41aa-85a0-d593bc637d58 · outbound

This paper cites Computational complexity of multiple sequence alignment with sp-score.Journal of Computational Biology, 8(6):615–623, 2001.

Structure-Informed Multiple Sequence Alignment: A Formal Model and Hardness Results Computational complexity of multiple sequence alignment with sp-score.Journal of Computational Biology, 8(6):615–623, 2001

Reference 9

Resolution: unresolved; no resolver link, observed 2026-06-28T11:40:24.307270Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 392c2bb5-fb7d-4e73-983b-4d42cc8fa1e9 · outbound

This paper cites Settling the intractability of multiple alignment.Journal of Computational Biology, 13(7):1323–1339, 2006.

Structure-Informed Multiple Sequence Alignment: A Formal Model and Hardness Results Settling the intractability of multiple alignment.Journal of Computational Biology, 13(7):1323–1339, 2006

Reference 10

Resolution: unresolved; no resolver link, observed 2026-06-28T11:40:24.307270Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 52484cf7-fe75-47d9-8043-70ab9f4276bd · outbound

This paper cites Edgar and Serafim Batzoglou.

Structure-Informed Multiple Sequence Alignment: A Formal Model and Hardness Results Edgar and Serafim Batzoglou

Reference 11

Resolution: unresolved; no resolver link, observed 2026-06-28T11:40:24.307270Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 2809d5c8-9f72-4435-ab24-3f61da85160d · outbound

This paper cites A survey on sequence alignment algorithms and state-of-the- art aligners.ACM Computing Surveys, 58(3), 2025.

Structure-Informed Multiple Sequence Alignment: A Formal Model and Hardness Results A survey on sequence alignment algorithms and state-of-the- art aligners.ACM Computing Surveys, 58(3), 2025

Reference 12

Resolution: unresolved; no resolver link, observed 2026-06-28T11:40:24.307270Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation e3b7ab88-991e-40cc-a23e-1496e6210a75 · outbound

This paper cites Higgins, and Cédric Notredame.

Structure-Informed Multiple Sequence Alignment: A Formal Model and Hardness Results Higgins, and Cédric Notredame

Reference 13

Resolution: unresolved; no resolver link, observed 2026-06-28T11:40:24.307270Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 44a2b157-9ae4-461e-b319-2994985a8a16 · outbound

This paper cites an unresolved cited work.

Structure-Informed Multiple Sequence Alignment: A Formal Model and Hardness Results Unresolved cited work

Reference 14

Resolution: unresolved; no resolver link, observed 2026-06-28T11:40:24.307270Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 93791982-ee75-4182-af43-659e59836163 · outbound

This paper cites Standley, and Kazutaka Katoh.

Structure-Informed Multiple Sequence Alignment: A Formal Model and Hardness Results Standley, and Kazutaka Katoh

Reference 15

Resolution: unresolved; no resolver link, observed 2026-06-28T11:40:24.307270Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation f2d23487-0190-4822-9524-e21b0a47ea2f · outbound

This paper cites Protein multiple alignments: sequence- based versus structure-based programs.Bioinformatics, 35(20):3970–3980, 2019.

Structure-Informed Multiple Sequence Alignment: A Formal Model and Hardness Results Protein multiple alignments: sequence- based versus structure-based programs.Bioinformatics, 35(20):3970–3980, 2019

Reference 16

Resolution: unresolved; no resolver link, observed 2026-06-28T11:40:24.307270Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 76fc75ca-1d55-4414-8d15-3c3ee7e567ed · outbound

This paper cites Papadimitriou.

Structure-Informed Multiple Sequence Alignment: A Formal Model and Hardness Results Papadimitriou

Reference 17

Resolution: unresolved; no resolver link, observed 2026-06-28T11:40:24.307270Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 719a7dd2-e7c4-452d-ac15-06cb8d4e1b3e · outbound

This paper cites Proof verification and the hardness of approximation problems.Journal of the ACM, 45(3):501–555, 1998.

Structure-Informed Multiple Sequence Alignment: A Formal Model and Hardness Results Proof verification and the hardness of approximation problems.Journal of the ACM, 45(3):501–555, 1998

Reference 18

Resolution: unresolved; no resolver link, observed 2026-06-28T11:40:24.307270Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Pith citing papers

No inbound Pith citation observations are available.