Paper Citation Record · LEDGER

DeepPlantCRE: A Transformer-CNN Hybrid Framework for Plant Gene Expression Modeling and Cross-Species Generalization

As of 19 August 2026, this Paper Citation Record lists 38 of 38 outbound references and 0 inbound Pith citation observations for arXiv:2505.09883.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2505.09883 v1

Coverage vector

measured 38 of 38 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-15T21:26:52.291710Z

measured 38 of 38 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-19T06:32:44.657259+00:00

measured 0 of 0 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: cited_works

Reference resolution

38 of 38 outbound references displayed

verified exact1
verified fuzzy15
unresolved22
parse uncertain0
malformed identifier0
metadata mismatch0

External citation measurements

No source-named external measurement is stored.

Outbound references

Observation d538f6b9-8a42-4ff9-a2de-4c70126bd912 · outbound

This paper cites Adamo, M.

DeepPlantCRE: A Transformer-CNN Hybrid Framework for Plant Gene Expression Modeling and Cross-Species Generalization Adamo, M

Reference 1

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T21:26:52.716807Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation 675f4609-562f-4d13-a617-1c22c74e6b22 · outbound

This paper cites Akagi, K.

DeepPlantCRE: A Transformer-CNN Hybrid Framework for Plant Gene Expression Modeling and Cross-Species Generalization Akagi, K

Reference 2

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T21:26:52.706079Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation dfaf96ad-0dd0-42a4-92c2-7d63e5523fd5 · outbound

This paper cites Alipanahi, A.

DeepPlantCRE: A Transformer-CNN Hybrid Framework for Plant Gene Expression Modeling and Cross-Species Generalization Alipanahi, A

Reference 3

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T21:26:52.695522Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation 857d5b40-f554-4e9d-8006-d2833a490fa0 · outbound

This paper cites an unresolved cited work.

DeepPlantCRE: A Transformer-CNN Hybrid Framework for Plant Gene Expression Modeling and Cross-Species Generalization Unresolved cited work

Reference 4

Resolution: unresolved; raw_fallback, observed 2026-08-15T21:26:52.683554Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation 8408884f-4143-491a-976b-b8c905e98905 · outbound

This paper cites Avsec, V.

DeepPlantCRE: A Transformer-CNN Hybrid Framework for Plant Gene Expression Modeling and Cross-Species Generalization Avsec, V

Reference 5

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T21:26:52.672044Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation f01b14d5-b8f4-4493-b073-d1d07f706a61 · outbound

This paper cites an unresolved cited work.

DeepPlantCRE: A Transformer-CNN Hybrid Framework for Plant Gene Expression Modeling and Cross-Species Generalization Unresolved cited work

Reference 6

Resolution: unresolved; raw_fallback, observed 2026-08-15T21:26:52.661586Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation b7f80343-a3df-4a9f-be1a-508f382e299b · outbound

This paper cites an unresolved cited work.

DeepPlantCRE: A Transformer-CNN Hybrid Framework for Plant Gene Expression Modeling and Cross-Species Generalization Unresolved cited work

Reference 7

Resolution: unresolved; raw_fallback, observed 2026-08-15T21:26:52.650393Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation 97031773-404e-4c6a-8b61-f3bceee4bd7c · outbound

This paper cites an unresolved cited work.

DeepPlantCRE: A Transformer-CNN Hybrid Framework for Plant Gene Expression Modeling and Cross-Species Generalization Unresolved cited work

Reference 8

Resolution: unresolved; raw_fallback, observed 2026-08-15T21:26:52.638777Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation df842d8d-c3ab-416f-9a3f-27c82e466b72 · outbound

This paper cites Gupta, J.

DeepPlantCRE: A Transformer-CNN Hybrid Framework for Plant Gene Expression Modeling and Cross-Species Generalization Gupta, J

Reference 9

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T21:26:52.627290Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation f8337eb5-7bb6-47f9-b13c-d3789e6194a9 · outbound

This paper cites Autonomous artificial intelligence discovers mechanisms of molecular self-organization in virtual experiments.

DeepPlantCRE: A Transformer-CNN Hybrid Framework for Plant Gene Expression Modeling and Cross-Species Generalization Autonomous artificial intelligence discovers mechanisms of molecular self-organization in virtual experiments

Reference 10

Resolution: verified exact; local_arxiv, observed 2026-08-15T21:26:52.338182Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation 7552151d-9302-4cd1-a145-a114634a1746 · outbound

This paper cites an unresolved cited work.

DeepPlantCRE: A Transformer-CNN Hybrid Framework for Plant Gene Expression Modeling and Cross-Species Generalization Unresolved cited work

Reference 11

Resolution: unresolved; raw_fallback, observed 2026-08-15T21:26:52.617393Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation a9cec3f3-4478-4c70-b28e-c9d1434ed1de · outbound

This paper cites an unresolved cited work.

DeepPlantCRE: A Transformer-CNN Hybrid Framework for Plant Gene Expression Modeling and Cross-Species Generalization Unresolved cited work

Reference 12

Resolution: unresolved; raw_fallback, observed 2026-08-15T21:26:52.607915Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation 0c065375-f748-40e1-b074-87e8131821eb · outbound

This paper cites an unresolved cited work.

DeepPlantCRE: A Transformer-CNN Hybrid Framework for Plant Gene Expression Modeling and Cross-Species Generalization Unresolved cited work

Reference 13

Resolution: unresolved; raw_fallback, observed 2026-08-15T21:26:52.598034Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation 0feafa9a-1511-402b-9240-7b0c02e55124 · outbound

This paper cites an unresolved cited work.

DeepPlantCRE: A Transformer-CNN Hybrid Framework for Plant Gene Expression Modeling and Cross-Species Generalization Unresolved cited work

Reference 14

Resolution: unresolved; raw_fallback, observed 2026-08-15T21:26:52.588023Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation 368d1805-ace3-40c8-99e6-3b0967a1349a · outbound

This paper cites Maghraby and M.

DeepPlantCRE: A Transformer-CNN Hybrid Framework for Plant Gene Expression Modeling and Cross-Species Generalization Maghraby and M

Reference 15

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T21:26:52.577696Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation e1f1dd6f-e00d-4d98-865b-3561135414f0 · outbound

This paper cites Muller, J.

DeepPlantCRE: A Transformer-CNN Hybrid Framework for Plant Gene Expression Modeling and Cross-Species Generalization Muller, J

Reference 16

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T21:26:52.566943Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation 3c9f6e37-fe19-4c9c-9047-a29fa6ab3adb · outbound

This paper cites Nguyen, D.

DeepPlantCRE: A Transformer-CNN Hybrid Framework for Plant Gene Expression Modeling and Cross-Species Generalization Nguyen, D

Reference 17

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T21:26:52.556491Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation a2266ead-394f-46d3-b2a5-2e0d3a12c8c2 · outbound

This paper cites an unresolved cited work.

DeepPlantCRE: A Transformer-CNN Hybrid Framework for Plant Gene Expression Modeling and Cross-Species Generalization Unresolved cited work

Reference 18

Resolution: unresolved; raw_fallback, observed 2026-08-15T21:26:52.546006Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation 398b8fe1-e322-4894-9657-4507f5eeda2d · outbound

This paper cites Ouyang, F.

DeepPlantCRE: A Transformer-CNN Hybrid Framework for Plant Gene Expression Modeling and Cross-Species Generalization Ouyang, F

Reference 19

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T21:26:52.535623Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation dd3f0a41-8354-4cfe-b0fb-f9903001691d · outbound

This paper cites an unresolved cited work.

DeepPlantCRE: A Transformer-CNN Hybrid Framework for Plant Gene Expression Modeling and Cross-Species Generalization Unresolved cited work

Reference 20

Resolution: unresolved; raw_fallback, observed 2026-08-15T21:26:52.525258Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation 8b975316-1a30-45b5-84e2-02f98f7e1490 · outbound

This paper cites Pertea, G.

DeepPlantCRE: A Transformer-CNN Hybrid Framework for Plant Gene Expression Modeling and Cross-Species Generalization Pertea, G

Reference 21

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T21:26:52.514816Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation d579e58a-fd35-4b1b-adbd-ec91b40167ec · outbound

This paper cites Pinto-Cámara, A.

DeepPlantCRE: A Transformer-CNN Hybrid Framework for Plant Gene Expression Modeling and Cross-Species Generalization Pinto-Cámara, A

Reference 22

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T21:26:52.505140Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation 4a482b48-7e67-4c8a-87aa-ee67d52ee073 · outbound

This paper cites Rodríguez-Leal, Z.

DeepPlantCRE: A Transformer-CNN Hybrid Framework for Plant Gene Expression Modeling and Cross-Species Generalization Rodríguez-Leal, Z

Reference 23

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T21:26:52.494834Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation 06cbb431-9468-4016-8bf2-1974427f9bac · outbound

This paper cites Rychel, A.

DeepPlantCRE: A Transformer-CNN Hybrid Framework for Plant Gene Expression Modeling and Cross-Species Generalization Rychel, A

Reference 24

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T21:26:52.483730Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation 718de490-3372-4b4d-a51f-33a907a30bc5 · outbound

This paper cites Shrikumar, P.

DeepPlantCRE: A Transformer-CNN Hybrid Framework for Plant Gene Expression Modeling and Cross-Species Generalization Shrikumar, P

Reference 25

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T21:26:52.474110Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation 887f2718-ba73-4fd9-9e1f-7af93ad44803 · outbound

This paper cites Technical Note on Transcription Factor Motif Discovery from Importance Scores (TF-MoDISco) version 0.5.6.5.

DeepPlantCRE: A Transformer-CNN Hybrid Framework for Plant Gene Expression Modeling and Cross-Species Generalization Technical Note on Transcription Factor Motif Discovery from Importance Scores (TF-MoDISco) version 0.5.6.5

Reference 26

Resolution: unresolved; no resolver link, observed 2026-08-15T21:26:52.249124Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 4e3939c5-bc88-4815-9a42-bc18465fff80 · outbound

This paper cites an unresolved cited work.

DeepPlantCRE: A Transformer-CNN Hybrid Framework for Plant Gene Expression Modeling and Cross-Species Generalization Unresolved cited work

Reference 27

Resolution: unresolved; raw_fallback, observed 2026-08-15T21:26:52.464129Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation b16b072d-e71b-4183-aa88-a175799bac00 · outbound

This paper cites Takeda, Y.

DeepPlantCRE: A Transformer-CNN Hybrid Framework for Plant Gene Expression Modeling and Cross-Species Generalization Takeda, Y

Reference 28

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T21:26:52.453800Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation 0beeba94-3a89-4919-bd75-6915cc999a17 · outbound

This paper cites an unresolved cited work.

DeepPlantCRE: A Transformer-CNN Hybrid Framework for Plant Gene Expression Modeling and Cross-Species Generalization Unresolved cited work

Reference 29

Resolution: unresolved; raw_fallback, observed 2026-08-15T21:26:52.442755Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation 12726fef-86ad-44a0-8ce2-1b12551f5f1d · outbound

This paper cites Vaswani, N.

DeepPlantCRE: A Transformer-CNN Hybrid Framework for Plant Gene Expression Modeling and Cross-Species Generalization Vaswani, N

Reference 30

Resolution: unresolved; no resolver link, observed 2026-08-15T21:26:52.264717Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation c155f666-bd13-45c8-b0e2-0b56b4277e2e · outbound

This paper cites an unresolved cited work.

DeepPlantCRE: A Transformer-CNN Hybrid Framework for Plant Gene Expression Modeling and Cross-Species Generalization Unresolved cited work

Reference 31

Resolution: unresolved; raw_fallback, observed 2026-08-15T21:26:52.424554Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation 261d8de9-1d1e-42e3-b033-4259ab112e60 · outbound

This paper cites an unresolved cited work.

DeepPlantCRE: A Transformer-CNN Hybrid Framework for Plant Gene Expression Modeling and Cross-Species Generalization Unresolved cited work

Reference 32

Resolution: unresolved; raw_fallback, observed 2026-08-15T21:26:52.413786Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation 7e35181e-f26e-4092-b1d1-ca72bb834a67 · outbound

This paper cites an unresolved cited work.

DeepPlantCRE: A Transformer-CNN Hybrid Framework for Plant Gene Expression Modeling and Cross-Species Generalization Unresolved cited work

Reference 33

Resolution: unresolved; raw_fallback, observed 2026-08-15T21:26:52.402303Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation d082d6f6-283e-4acf-b24e-c5eea86ad348 · outbound

This paper cites an unresolved cited work.

DeepPlantCRE: A Transformer-CNN Hybrid Framework for Plant Gene Expression Modeling and Cross-Species Generalization Unresolved cited work

Reference 34

Resolution: unresolved; raw_fallback, observed 2026-08-15T21:26:52.391001Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation 93c1a896-c9be-42ba-870d-622a3e40f3fd · outbound

This paper cites an unresolved cited work.

DeepPlantCRE: A Transformer-CNN Hybrid Framework for Plant Gene Expression Modeling and Cross-Species Generalization Unresolved cited work

Reference 35

Resolution: unresolved; raw_fallback, observed 2026-08-15T21:26:52.380176Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation 05628534-033a-43f4-b9e1-c61d34beb33e · outbound

This paper cites an unresolved cited work.

DeepPlantCRE: A Transformer-CNN Hybrid Framework for Plant Gene Expression Modeling and Cross-Species Generalization Unresolved cited work

Reference 36

Resolution: unresolved; raw_fallback, observed 2026-08-15T21:26:52.369566Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation 6f358551-b2c3-4678-933f-6a72da1e36b0 · outbound

This paper cites an unresolved cited work.

DeepPlantCRE: A Transformer-CNN Hybrid Framework for Plant Gene Expression Modeling and Cross-Species Generalization Unresolved cited work

Reference 37

Resolution: unresolved; raw_fallback, observed 2026-08-15T21:26:52.358874Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation cdc9c201-4b02-4be4-8d08-fea4bfb1e1f1 · outbound

This paper cites an unresolved cited work.

DeepPlantCRE: A Transformer-CNN Hybrid Framework for Plant Gene Expression Modeling and Cross-Species Generalization Unresolved cited work

Reference 38

Resolution: unresolved; raw_fallback, observed 2026-08-15T21:26:52.348870Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Pith citing papers

No inbound Pith citation observations are available.