Paper Citation Record · LEDGER

Frustration, dynamics and catalysis

As of 23 August 2026, this Paper Citation Record lists 41 of 41 outbound references and 1 inbound Pith citation observation for arXiv:2505.00600.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2505.00600 v2

Coverage vector

measured 41 of 41 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-16T04:42:24.455584Z

measured 42 of 42 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-23T06:30:58.430688+00:00

measured 1 of 1 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links, observed 2026-08-11T12:25:39.128427Z

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: pith, observed 2026-08-11T18:16:15.004306Z

Reference resolution

41 of 41 outbound references displayed

verified exact3
verified fuzzy37
unresolved1
parse uncertain0
malformed identifier0
metadata mismatch0

External citation measurements

No source-named external measurement is stored.

Outbound references

Observation ff071122-54c6-44db-a1b8-0cc122b4164f · outbound

This paper cites an unresolved cited work.

Frustration, dynamics and catalysis Unresolved cited work

Reference 1

Resolution: unresolved; raw_fallback, observed 2026-08-16T04:42:25.048471Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation d3f41266-cb46-4a42-8532-7ca8ac1da35a · outbound

This paper cites Ligand binding and internal equilibria in proteins.

Frustration, dynamics and catalysis Ligand binding and internal equilibria in proteins

Reference 2

Resolution: verified fuzzy; raw_fallback, observed 2026-08-16T04:42:25.035301Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation 106d0a5c-b529-4e1f-af5e-774ac3eeaa8d · outbound

This paper cites Conformational substates in proteins.

Frustration, dynamics and catalysis Conformational substates in proteins

Reference 3

Resolution: verified fuzzy; raw_fallback, observed 2026-08-16T04:42:25.021779Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation 7744f728-0fe2-4317-88ca-53e8d3762c73 · outbound

This paper cites A perspective on enzyme catalysis.

Frustration, dynamics and catalysis A perspective on enzyme catalysis

Reference 4

Resolution: verified fuzzy; raw_fallback, observed 2026-08-16T04:42:25.008182Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation d9386eed-e43f-454e-9181-ebda0a23c551 · outbound

This paper cites Protein states and proteinquakes.

Frustration, dynamics and catalysis Protein states and proteinquakes

Reference 5

Resolution: verified fuzzy; raw_fallback, observed 2026-08-16T04:42:24.993929Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation 51d0858c-ca23-4e4a-b79f-e8e1dfc06d61 · outbound

This paper cites Function and dynamics of myoglobin.

Frustration, dynamics and catalysis Function and dynamics of myoglobin

Reference 6

Resolution: verified fuzzy; raw_fallback, observed 2026-08-16T04:42:24.980081Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation 21662649-35f1-48cf-ae6d-618c9a306502 · outbound

This paper cites The energy landscapes and motions of proteins.

Frustration, dynamics and catalysis The energy landscapes and motions of proteins

Reference 7

Resolution: verified fuzzy; raw_fallback, observed 2026-08-16T04:42:24.967637Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation 82b5d736-635f-43ce-b79c-cfee8d1417f8 · outbound

This paper cites Evolution, energy landscapes and the paradoxes of protein folding.

Frustration, dynamics and catalysis Evolution, energy landscapes and the paradoxes of protein folding

Reference 8

Resolution: verified fuzzy; raw_fallback, observed 2026-08-16T04:42:24.953393Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation 61195e25-6431-495a-a769-317162406264 · outbound

This paper cites Spin glasses and the statistical mechanics of protein folding.

Frustration, dynamics and catalysis Spin glasses and the statistical mechanics of protein folding

Reference 9

Resolution: verified fuzzy; raw_fallback, observed 2026-08-16T04:42:24.939350Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation f5449877-91f6-4acb-aea3-c8a6a60830b8 · outbound

This paper cites Toward an outline of the topography of a realistic protein-folding funnel.

Frustration, dynamics and catalysis Toward an outline of the topography of a realistic protein-folding funnel

Reference 10

Resolution: verified fuzzy; raw_fallback, observed 2026-08-16T04:42:24.925355Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation 7db69260-05b2-4278-8836-60eb400489e8 · outbound

This paper cites Frustration in biomolecules.

Frustration, dynamics and catalysis Frustration in biomolecules

Reference 11

Resolution: verified fuzzy; raw_fallback, observed 2026-08-16T04:42:24.911035Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation c9a656bd-69b2-4b5a-8d83-1a7ed655623f · outbound

This paper cites Frustration in physiology and molecular medicine.

Frustration, dynamics and catalysis Frustration in physiology and molecular medicine

Reference 12

Resolution: verified fuzzy; raw_fallback, observed 2026-08-16T04:42:24.896259Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation 914362e5-b928-49a4-b13a-00b3a8507365 · outbound

This paper cites Frustration, function and folding.

Frustration, dynamics and catalysis Frustration, function and folding

Reference 13

Resolution: verified fuzzy; raw_fallback, observed 2026-08-16T04:42:24.882156Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation a197a138-5afe-4e3c-8566-c04edf44922d · outbound

This paper cites Structural biology.

Frustration, dynamics and catalysis Structural biology

Reference 14

Resolution: verified fuzzy; raw_fallback, observed 2026-08-16T04:42:24.869943Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation 9d8bad27-351d-4f5e-892f-ec9a7ebfdd81 · outbound

This paper cites Evolution of enzyme function and the development of catalytic efficiency.

Frustration, dynamics and catalysis Evolution of enzyme function and the development of catalytic efficiency

Reference 15

Resolution: verified fuzzy; raw_fallback, observed 2026-08-16T04:42:24.856615Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation 4c48fc63-a359-4f24-897f-892ed37a7629 · outbound

This paper cites The Moderately Efficient Enzyme: Futile Encounters and Enzyme Floppiness.

Frustration, dynamics and catalysis The Moderately Efficient Enzyme: Futile Encounters and Enzyme Floppiness

Reference 16

Resolution: verified fuzzy; raw_fallback, observed 2026-08-16T04:42:24.843226Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation d0a5239f-8efd-40b2-ab02-1bf8523ff6b3 · outbound

This paper cites Localizing frustration in native proteins and protein assemblies.

Frustration, dynamics and catalysis Localizing frustration in native proteins and protein assemblies

Reference 17

Resolution: verified fuzzy; raw_fallback, observed 2026-08-16T04:42:24.828956Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation 6c4ae995-ef66-46c9-a684-41d35ddb95e2 · outbound

This paper cites FrustratometeR: an R-package to compute local frustration in protein structures, point mutants and MD simulations.

Frustration, dynamics and catalysis FrustratometeR: an R-package to compute local frustration in protein structures, point mutants and MD simulations

Reference 18

Resolution: verified fuzzy; raw_fallback, observed 2026-08-16T04:42:24.814555Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation 16659b1b-f63a-4ca0-aab0-699c7a265223 · outbound

This paper cites Local frustration around enzyme active sites.

Frustration, dynamics and catalysis Local frustration around enzyme active sites

Reference 19

Resolution: verified fuzzy; raw_fallback, observed 2026-08-16T04:42:24.799532Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation 8eff2712-f461-4d41-b1bc-eae672be3f9a · outbound

This paper cites Local energetic frustration conservation in protein families and superfamilies.

Frustration, dynamics and catalysis Local energetic frustration conservation in protein families and superfamilies

Reference 20

Resolution: verified fuzzy; raw_fallback, observed 2026-08-16T04:42:24.784822Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation d8e28693-2876-4d3f-96c1-1f90d7e8e6c6 · outbound

This paper cites Enzyme Stability-Activity Trade-Off: New Insights from Protein Stability Weaknesses and Evolutionary Conservation.

Frustration, dynamics and catalysis Enzyme Stability-Activity Trade-Off: New Insights from Protein Stability Weaknesses and Evolutionary Conservation

Reference 21

Resolution: verified fuzzy; raw_fallback, observed 2026-08-16T04:42:24.770108Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation 3454ab2c-a676-424f-8d8a-8c5c9a040b2e · outbound

This paper cites A relationship between protein stability and protein function.

Frustration, dynamics and catalysis A relationship between protein stability and protein function

Reference 22

Resolution: verified fuzzy; raw_fallback, observed 2026-08-16T04:42:24.757894Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation 66d9e0d2-5f7a-40c6-8259-939b770a3328 · outbound

This paper cites How protein stability and new functions trade off.

Frustration, dynamics and catalysis How protein stability and new functions trade off

Reference 23

Resolution: verified fuzzy; raw_fallback, observed 2026-08-16T04:42:24.744285Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation 29bdd4a8-c2d5-459b-b19f-c9cb4ac88156 · outbound

This paper cites D3DistalMutation: a Database to Explore the Effect of Distal Mutations on Enzyme Activity.

Frustration, dynamics and catalysis D3DistalMutation: a Database to Explore the Effect of Distal Mutations on Enzyme Activity

Reference 24

Resolution: verified fuzzy; raw_fallback, observed 2026-08-16T04:42:24.729590Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation 33b290ba-24a2-4cb6-86b7-d94d0243a7ff · outbound

This paper cites Correlated motions and residual frustration in thrombin.

Frustration, dynamics and catalysis Correlated motions and residual frustration in thrombin

Reference 25

Resolution: verified fuzzy; raw_fallback, observed 2026-08-16T04:42:24.715960Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation 66c6cb8f-d7db-4ad3-a53f-31ff5a3f3005 · outbound

This paper cites Enzymes as viscoelastic catalytic machines.

Frustration, dynamics and catalysis Enzymes as viscoelastic catalytic machines

Reference 26

Resolution: verified exact; doi, observed 2026-08-16T04:42:24.518243Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation 6ca59925-95c2-42fc-b323-ed4f590de6f5 · outbound

This paper cites Nonlinear elasticity, proteinquakes, and the energy landscapes of functional transitions in proteins.

Frustration, dynamics and catalysis Nonlinear elasticity, proteinquakes, and the energy landscapes of functional transitions in proteins

Reference 27

Resolution: verified fuzzy; raw_fallback, observed 2026-08-16T04:42:24.701246Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation 1e081eb4-224c-4e29-a385-1e5bb396817a · outbound

This paper cites On the role of frustration in the energy landscapes of allosteric proteins.

Frustration, dynamics and catalysis On the role of frustration in the energy landscapes of allosteric proteins

Reference 28

Resolution: verified fuzzy; raw_fallback, observed 2026-08-16T04:42:24.688708Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation f4f6cd03-aa08-4059-80b6-c2de8864aff0 · outbound

This paper cites Cracking Controls ATP Hydrolysis in the catalytic domain of a P-ATPase.

Frustration, dynamics and catalysis Cracking Controls ATP Hydrolysis in the catalytic domain of a P-ATPase

Reference 29

Resolution: verified exact; doi, observed 2026-08-16T04:42:24.505263Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation dda7a1a1-e169-45f1-9ec9-a01000063644 · outbound

This paper cites Overcoming the Bottleneck of the Enzymatic Cycle by Steric Frustration.

Frustration, dynamics and catalysis Overcoming the Bottleneck of the Enzymatic Cycle by Steric Frustration

Reference 30

Resolution: verified fuzzy; raw_fallback, observed 2026-08-16T04:42:24.676802Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation bcf1b11e-e28d-4b49-bfaa-4af304fe2754 · outbound

This paper cites Role of substrate-product frustration on enzyme functional dynamics.

Frustration, dynamics and catalysis Role of substrate-product frustration on enzyme functional dynamics

Reference 31

Resolution: verified fuzzy; raw_fallback, observed 2026-08-16T04:42:24.663432Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation 9f6487b4-1d91-49c2-88b2-38811e25d05a · outbound

This paper cites Enzyme millisecond conformational dynamics do not catalyze the chemical step.

Frustration, dynamics and catalysis Enzyme millisecond conformational dynamics do not catalyze the chemical step

Reference 32

Resolution: verified fuzzy; raw_fallback, observed 2026-08-16T04:42:24.648412Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation 8a20630f-448f-4cab-a0f7-a34f83cf8a4e · outbound

This paper cites Temperature-sensitive contacts in disordered loops tune enzyme I activity.

Frustration, dynamics and catalysis Temperature-sensitive contacts in disordered loops tune enzyme I activity

Reference 33

Resolution: verified fuzzy; raw_fallback, observed 2026-08-16T04:42:24.634340Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation d8e37cfc-787e-4e88-9138-adb081f13923 · outbound

This paper cites Local frustration determines loop opening during the catalytic cycle of an oxidoreductase.

Frustration, dynamics and catalysis Local frustration determines loop opening during the catalytic cycle of an oxidoreductase

Reference 34

Resolution: verified exact; doi, observed 2026-08-16T04:42:24.491834Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation 9f553117-23bc-4526-bd05-9f51b8b7176a · outbound

This paper cites Frustration Dynamics and Electron-Transfer Reorganization Energies in Wild-Type and Mutant Azurins.

Frustration, dynamics and catalysis Frustration Dynamics and Electron-Transfer Reorganization Energies in Wild-Type and Mutant Azurins

Reference 35

Resolution: verified fuzzy; raw_fallback, observed 2026-08-16T04:42:24.620302Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation ede80b7d-aeb1-44dd-9c1c-ddf458014656 · outbound

This paper cites Exploring the dynamics of holo-Shikimate Kinase through molecular mechanics.

Frustration, dynamics and catalysis Exploring the dynamics of holo-Shikimate Kinase through molecular mechanics

Reference 36

Resolution: verified fuzzy; raw_fallback, observed 2026-08-16T04:42:24.606749Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation e7c64de2-667f-46bb-b3b1-0ddef5bbf635 · outbound

This paper cites Improving Protein Expression, Stability, and Function with ProteinMPNN.

Frustration, dynamics and catalysis Improving Protein Expression, Stability, and Function with ProteinMPNN

Reference 37

Resolution: verified fuzzy; raw_fallback, observed 2026-08-16T04:42:24.591682Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation 3150d8ad-a2ef-42d1-b1cb-2a24ff44859a · outbound

This paper cites Robust deep learning-based protein sequence design using ProteinMPNN.

Frustration, dynamics and catalysis Robust deep learning-based protein sequence design using ProteinMPNN

Reference 38

Resolution: verified fuzzy; raw_fallback, observed 2026-08-16T04:42:24.577550Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation cc0d4147-6539-423f-972b-c67aa2c4d4bd · outbound

This paper cites Dynamical contributions to enzyme catalysis: critical tests of a popular hypothesis.

Frustration, dynamics and catalysis Dynamical contributions to enzyme catalysis: critical tests of a popular hypothesis

Reference 39

Resolution: verified fuzzy; raw_fallback, observed 2026-08-16T04:42:24.563078Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation 5b8e015d-6951-40d4-af6e-4f4f57319b77 · outbound

This paper cites Predicting protein conformational motions using energetic frustration analysis and AlphaFold2.

Frustration, dynamics and catalysis Predicting protein conformational motions using energetic frustration analysis and AlphaFold2

Reference 40

Resolution: verified fuzzy; raw_fallback, observed 2026-08-16T04:42:24.546572Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Observation da5fc84a-4525-4e9d-b8d5-5af900b54d78 · outbound

This paper cites Structural dynamics shape the fitness window of alanine:glyoxylate aminotransferase.

Frustration, dynamics and catalysis Structural dynamics shape the fitness window of alanine:glyoxylate aminotransferase

Reference 41

Resolution: verified fuzzy; raw_fallback, observed 2026-08-16T04:42:24.532715Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.

Pith citing papers

Observation f8fcc2b1-bd83-40b8-abf0-c0320299e96b · inbound

Inferring protein folding mechanisms from natural sequence diversity cites this paper.

Inferring protein folding mechanisms from natural sequence diversity Frustration, dynamics and catalysis

Reference 44

Resolution: metadata mismatch; local_arxiv, observed 2026-08-11T12:25:39.167739Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-23T06:30:58.430688+00:00.