Paper Citation Record · LEDGER

Assessment of protein assembly prediction in CASP13

As of 22 August 2026, this Paper Citation Record lists 36 of 36 outbound references and 0 inbound Pith citation observations for arXiv:1908.07662.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
1908.07662 v1

Coverage vector

measured 36 of 36 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-14T12:16:30.355474Z

measured 36 of 36 standing notices

One-hop event checks from named stored sources.

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measured 0 of 0 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links

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A source-named dated measurement, never combined with another source.

Source: cited_works

Reference resolution

36 of 36 outbound references displayed

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External citation measurements

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Outbound references

Observation 318cd77c-1e5f-4f13-9f99-c6a911dabc97 · outbound

This paper cites The application of the oil turbine type of ultracentrifuge to the study of the stability region of carbon monoxide-hemoglobin.

Assessment of protein assembly prediction in CASP13 The application of the oil turbine type of ultracentrifuge to the study of the stability region of carbon monoxide-hemoglobin

Reference 1

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Observation 2d3fedea-870e-46c3-bde3-fd5b62c71999 · outbound

This paper cites Structural symmetry and protein function.

Assessment of protein assembly prediction in CASP13 Structural symmetry and protein function

Reference 2

Resolution: verified fuzzy; raw_fallback, observed 2026-08-14T12:16:30.867796Z

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Observation 88574606-3da1-4444-9ba9-f7f345c868bb · outbound

This paper cites Dynamic dissociating homo-oligomers and the control of protein function.

Assessment of protein assembly prediction in CASP13 Dynamic dissociating homo-oligomers and the control of protein function

Reference 3

Resolution: verified fuzzy; raw_fallback, observed 2026-08-14T12:16:30.855120Z

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Observation 8e091a8a-9f84-4dfe-839f-b0ff9cccfff3 · outbound

This paper cites Mechanisms of protein oligomerization, the critical role of insertions and deletions in maintaining different oligomeric states.

Assessment of protein assembly prediction in CASP13 Mechanisms of protein oligomerization, the critical role of insertions and deletions in maintaining different oligomeric states

Reference 4

Resolution: verified fuzzy; raw_fallback, observed 2026-08-14T12:16:30.841808Z

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Observation 9730b688-7fdf-47d1-a7af-0fe93a1bdfcb · outbound

This paper cites RCSB Protein Data Bank: biological macromolecular structures enabling research and education in fundamental biology, biomedicine, biotechnology and energy.

Assessment of protein assembly prediction in CASP13 RCSB Protein Data Bank: biological macromolecular structures enabling research and education in fundamental biology, biomedicine, biotechnology and energy

Reference 5

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Observation 63663b33-1653-4332-880d-fd37edc7bea5 · outbound

This paper cites Inside a living cell.

Assessment of protein assembly prediction in CASP13 Inside a living cell

Reference 6

Resolution: verified fuzzy; raw_fallback, observed 2026-08-14T12:16:30.814459Z

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Observation c662c3c1-64d9-4193-94b2-88bf96ba7458 · outbound

This paper cites Protein folding via binding and vice versa.

Assessment of protein assembly prediction in CASP13 Protein folding via binding and vice versa

Reference 7

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Observation 861435a2-16bf-4e27-84ac-a1dcbcfb954e · outbound

This paper cites Diversity of protein--protein interactions.

Assessment of protein assembly prediction in CASP13 Diversity of protein--protein interactions

Reference 8

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This paper cites A survey of protein--protein complex crystallizations.

Assessment of protein assembly prediction in CASP13 A survey of protein--protein complex crystallizations

Reference 9

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Observation e0342a1f-278e-476c-8a6d-82edcce997e0 · outbound

This paper cites The resolution revolution.

Assessment of protein assembly prediction in CASP13 The resolution revolution

Reference 10

Resolution: verified fuzzy; raw_fallback, observed 2026-08-14T12:16:30.759851Z

Source-reported events for the cited work

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Observation 2bc553da-8564-4068-a382-cdea14b89177 · outbound

This paper cites Frontiers in Cryo Electron Microscopy of Complex Macromolecular Assemblies.

Assessment of protein assembly prediction in CASP13 Frontiers in Cryo Electron Microscopy of Complex Macromolecular Assemblies

Reference 11

Resolution: verified fuzzy; raw_fallback, observed 2026-08-14T12:16:30.746175Z

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Observation 5fac9625-d02a-4236-8204-b0c5934df4fa · outbound

This paper cites CASP: A driving force in protein structure modeling.

Assessment of protein assembly prediction in CASP13 CASP: A driving force in protein structure modeling

Reference 12

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Observation 236a762b-f659-4268-870f-1404da6062ad · outbound

This paper cites Assessment of hard target modeling in CASP12 reveals an emerging role of alignment-based contact prediction methods.

Assessment of protein assembly prediction in CASP13 Assessment of hard target modeling in CASP12 reveals an emerging role of alignment-based contact prediction methods

Reference 13

Resolution: verified fuzzy; raw_fallback, observed 2026-08-14T12:16:30.716614Z

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Observation 91c2f70d-75ad-43b8-85c5-285de4a4bbbc · outbound

This paper cites Assessment of contact predictions in CASP12: Co-evolution and deep learning coming of age.

Assessment of protein assembly prediction in CASP13 Assessment of contact predictions in CASP12: Co-evolution and deep learning coming of age

Reference 14

Resolution: verified fuzzy; raw_fallback, observed 2026-08-14T12:16:30.703252Z

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Observation cfff309a-d30f-48c5-89bb-07a060ee2e67 · outbound

This paper cites Critical assessment of methods of protein structure prediction (CASP)—Round XII.

Assessment of protein assembly prediction in CASP13 Critical assessment of methods of protein structure prediction (CASP)—Round XII

Reference 15

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Observation f289f2fb-305e-4031-861c-209f896283d7 · outbound

This paper cites Understanding the fabric of protein crystals: computational classification of biological interfaces and crystal contacts.

Assessment of protein assembly prediction in CASP13 Understanding the fabric of protein crystals: computational classification of biological interfaces and crystal contacts

Reference 16

Resolution: verified fuzzy; raw_fallback, observed 2026-08-14T12:16:30.675111Z

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Observation f68de1b3-14a9-4901-a0a6-6e86d31d78b5 · outbound

This paper cites Automated evaluation of quaternary structures from protein crystals.

Assessment of protein assembly prediction in CASP13 Automated evaluation of quaternary structures from protein crystals

Reference 17

Resolution: verified fuzzy; raw_fallback, observed 2026-08-14T12:16:30.661424Z

Source-reported events for the cited work

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Observation 2d24f0ca-4bec-4d56-a301-6fa82327afd1 · outbound

This paper cites Stock-based detection of protein oligomeric states in jsPISA.

Assessment of protein assembly prediction in CASP13 Stock-based detection of protein oligomeric states in jsPISA

Reference 18

Resolution: verified fuzzy; raw_fallback, observed 2026-08-14T12:16:30.647651Z

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Observation e5d70527-ee69-4d7e-8c67-a0d10612a6eb · outbound

This paper cites A completely reimplemented MPI bioinformatics toolkit with a new HHpred server at its core.

Assessment of protein assembly prediction in CASP13 A completely reimplemented MPI bioinformatics toolkit with a new HHpred server at its core

Reference 19

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Observation 4b6302bb-b344-4357-9d5c-1d2f960fe6c5 · outbound

This paper cites Principles and characteristics of biological assemblies in experimentally determined protein structures.

Assessment of protein assembly prediction in CASP13 Principles and characteristics of biological assemblies in experimentally determined protein structures

Reference 20

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Observation 0e0eb0b9-6987-4a03-8583-4635c026c185 · outbound

This paper cites Assessment of protein assembly prediction in CASP12.

Assessment of protein assembly prediction in CASP13 Assessment of protein assembly prediction in CASP12

Reference 21

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Observation 83025da2-e10d-4114-9834-050d5f662987 · outbound

This paper cites lDDT: a local superposition-free score for comparing protein structures and models using distance difference tests.

Assessment of protein assembly prediction in CASP13 lDDT: a local superposition-free score for comparing protein structures and models using distance difference tests

Reference 22

Resolution: verified fuzzy; raw_fallback, observed 2026-08-14T12:16:30.594560Z

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Observation f990a807-a844-4681-bf47-07d4a1f1ca8e · outbound

This paper cites Processing and analysis of CASP3 protein structure predictions.

Assessment of protein assembly prediction in CASP13 Processing and analysis of CASP3 protein structure predictions

Reference 23

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No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 39ac9878-2100-4ccf-8600-7d8df674994e · outbound

This paper cites Modeling protein quaternary structure of homo-and hetero-oligomers beyond binary interactions by homology.

Assessment of protein assembly prediction in CASP13 Modeling protein quaternary structure of homo-and hetero-oligomers beyond binary interactions by homology

Reference 24

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Observation 272c05fa-00e7-41ec-8dbb-2bca95ef40fb · outbound

This paper cites BioJava 5: A community driven open-source bioinformatics library.

Assessment of protein assembly prediction in CASP13 BioJava 5: A community driven open-source bioinformatics library

Reference 25

Resolution: verified fuzzy; raw_fallback, observed 2026-08-14T12:16:30.555600Z

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Observation 5d2f994b-e7bd-49ab-9676-0e94807c69e9 · outbound

This paper cites Evaluation of template-based models in CASP8 with standard measures.

Assessment of protein assembly prediction in CASP13 Evaluation of template-based models in CASP8 with standard measures

Reference 26

Resolution: verified fuzzy; raw_fallback, observed 2026-08-14T12:16:30.542514Z

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Observation e04152ba-68cd-4204-9d6f-5a21886a5604 · outbound

This paper cites The challenge of modeling protein assemblies: the CASP12-CAPRI experiment.

Assessment of protein assembly prediction in CASP13 The challenge of modeling protein assemblies: the CASP12-CAPRI experiment

Reference 27

Resolution: verified fuzzy; raw_fallback, observed 2026-08-14T12:16:30.527973Z

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Observation 0fab8623-4999-4f08-91c6-bf5c8c1d991d · outbound

This paper cites CATH: an expanded resource to predict protein function through structure and sequence.

Assessment of protein assembly prediction in CASP13 CATH: an expanded resource to predict protein function through structure and sequence

Reference 28

Resolution: verified fuzzy; raw_fallback, observed 2026-08-14T12:16:30.514268Z

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Observation 39ab5eb0-281e-49c0-b55c-f99f4aa5fb10 · outbound

This paper cites Optimal contact definition for reconstruction of contact maps.

Assessment of protein assembly prediction in CASP13 Optimal contact definition for reconstruction of contact maps

Reference 29

Resolution: verified fuzzy; raw_fallback, observed 2026-08-14T12:16:30.500493Z

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Observation 4e40c709-8943-426a-9ce9-1a7517e6b243 · outbound

This paper cites Defining an essence of structure determining residue contacts in proteins.

Assessment of protein assembly prediction in CASP13 Defining an essence of structure determining residue contacts in proteins

Reference 30

Resolution: verified fuzzy; raw_fallback, observed 2026-08-14T12:16:30.487180Z

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Observation f90f91c6-8e96-4ed7-bad9-ebf45cf72c33 · outbound

This paper cites Sequence co-evolution gives 3D contacts and structures of protein complexes.

Assessment of protein assembly prediction in CASP13 Sequence co-evolution gives 3D contacts and structures of protein complexes

Reference 31

Resolution: verified fuzzy; raw_fallback, observed 2026-08-14T12:16:30.473350Z

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Observation 5d2ee346-3e47-460d-90ed-d980f10ee220 · outbound

This paper cites Robust and accurate prediction of residue--residue interactions across protein interfaces using evolutionary information.

Assessment of protein assembly prediction in CASP13 Robust and accurate prediction of residue--residue interactions across protein interfaces using evolutionary information

Reference 32

Resolution: verified fuzzy; raw_fallback, observed 2026-08-14T12:16:30.460713Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation f86eb351-ee5e-4b02-bdba-39efaef6d855 · outbound

This paper cites Small angle X-ray scattering and cross-linking for data assisted protein structure prediction in CASP 12 with prospects for improved accuracy.

Assessment of protein assembly prediction in CASP13 Small angle X-ray scattering and cross-linking for data assisted protein structure prediction in CASP 12 with prospects for improved accuracy

Reference 33

Resolution: verified fuzzy; raw_fallback, observed 2026-08-14T12:16:30.448105Z

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Observation d3bd866a-1637-4e3e-b5e9-6301074d7a36 · outbound

This paper cites SWISS-MODEL: homology modelling of protein structures and complexes.

Assessment of protein assembly prediction in CASP13 SWISS-MODEL: homology modelling of protein structures and complexes

Reference 34

Resolution: verified fuzzy; raw_fallback, observed 2026-08-14T12:16:30.434590Z

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Observation a99f6c90-f53e-48bc-b79f-deecc6621f9a · outbound

This paper cites Protein structure prediction and analysis using the Robetta server.

Assessment of protein assembly prediction in CASP13 Protein structure prediction and analysis using the Robetta server

Reference 35

Resolution: verified fuzzy; raw_fallback, observed 2026-08-14T12:16:30.420768Z

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No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation be9d976d-9a36-49da-8e02-51b9446d58ff · outbound

This paper cites Continuous Automated Model EvaluatiOn (CAMEO) complementing the critical assessment of structure prediction in CASP12.

Assessment of protein assembly prediction in CASP13 Continuous Automated Model EvaluatiOn (CAMEO) complementing the critical assessment of structure prediction in CASP12

Reference 36

Resolution: verified fuzzy; raw_fallback, observed 2026-08-14T12:16:30.403833Z

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No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Pith citing papers

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