Paper Citation Record · LEDGER

Tool Choice Matters: Evaluating edgeR vs. DESeq2 for Sensitivity, Robustness, and Cross-Study Performance

As of 16 August 2026, this Paper Citation Record lists 43 of 43 outbound references and 1 inbound Pith citation observation for arXiv:2601.04122.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2601.04122 v2

Coverage vector

measured 43 of 43 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-05-21T15:48:49.213101Z

measured 44 of 44 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-15T06:32:42.880941+00:00

measured 1 of 1 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links, observed 2026-07-01T05:45:56.867482Z

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: pith, observed 2026-07-01T10:15:44.111781Z

Reference resolution

43 of 43 outbound references displayed

verified exact0
verified fuzzy43
unresolved0
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malformed identifier0
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External citation measurements

No source-named external measurement is stored.

Outbound references

Observation 368f392e-03d4-4394-8963-6d673442b406 · outbound

This paper cites Tracing the evolutionary pathway of SARS-CoV-2 through RNA sequencing analysis.

Tool Choice Matters: Evaluating edgeR vs. DESeq2 for Sensitivity, Robustness, and Cross-Study Performance Tracing the evolutionary pathway of SARS-CoV-2 through RNA sequencing analysis

Reference 1

Resolution: verified fuzzy; raw_fallback, observed 2026-05-21T15:50:19.524588Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-15T06:32:42.880941+00:00.

Observation 7fd95782-cce9-4afb-8128-ff4c272cc180 · outbound

This paper cites Cross-modal predictive modeling of multi-omic data in 3D airway organ tissue equivalents during viral infection.

Tool Choice Matters: Evaluating edgeR vs. DESeq2 for Sensitivity, Robustness, and Cross-Study Performance Cross-modal predictive modeling of multi-omic data in 3D airway organ tissue equivalents during viral infection

Reference 2

Resolution: verified fuzzy; raw_fallback, observed 2026-05-21T15:50:19.548228Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-15T06:32:42.880941+00:00.

Observation 6dff3bcb-f390-4adb-9329-f6fe9f2d7b1d · outbound

This paper cites Transcriptomic profiling of human endothelial cells infected with venezuelan equine encephalitis virus reveals NRF2 driven host reprogramming mediated by omaveloxolone treatment.

Tool Choice Matters: Evaluating edgeR vs. DESeq2 for Sensitivity, Robustness, and Cross-Study Performance Transcriptomic profiling of human endothelial cells infected with venezuelan equine encephalitis virus reveals NRF2 driven host reprogramming mediated by omaveloxolone treatment

Reference 3

Resolution: verified fuzzy; raw_fallback, observed 2026-05-21T15:50:19.531294Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-15T06:32:42.880941+00:00.

Observation 8c8d2b8d-8063-45cb-92da-21e46dddc14f · outbound

This paper cites Transcriptional Consequences of MeCP2 Knockdown and Overexpression in Mouse Primary Cortical Neurons.

Tool Choice Matters: Evaluating edgeR vs. DESeq2 for Sensitivity, Robustness, and Cross-Study Performance Transcriptional Consequences of MeCP2 Knockdown and Overexpression in Mouse Primary Cortical Neurons

Reference 4

Resolution: verified fuzzy; raw_fallback, observed 2026-05-21T15:50:19.487005Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-15T06:32:42.880941+00:00.

Observation abc4ee93-b033-43dd-be1c-ccce8b9c00e6 · outbound

This paper cites Assessing concordance between RNA-Seq and NanoString technologies in Ebola-infected nonhuman primates using machine learning.

Tool Choice Matters: Evaluating edgeR vs. DESeq2 for Sensitivity, Robustness, and Cross-Study Performance Assessing concordance between RNA-Seq and NanoString technologies in Ebola-infected nonhuman primates using machine learning

Reference 5

Resolution: verified fuzzy; raw_fallback, observed 2026-05-21T15:50:19.558082Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-15T06:32:42.880941+00:00.

Observation af3af363-23fd-4a64-958d-4c956459d30d · outbound

This paper cites A comparative analysis of RNA-Seq and NanoString technologies in deciphering viral infection response in upper airway lung organoids.

Tool Choice Matters: Evaluating edgeR vs. DESeq2 for Sensitivity, Robustness, and Cross-Study Performance A comparative analysis of RNA-Seq and NanoString technologies in deciphering viral infection response in upper airway lung organoids

Reference 6

Resolution: verified fuzzy; raw_fallback, observed 2026-05-21T15:50:19.552902Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-15T06:32:42.880941+00:00.

Observation a3db588e-7fbd-41f5-a358-63155482ec39 · outbound

This paper cites Analysis of gene expression dynamics and differential expression in viral infections using generalized linear models and quasi-likelihood methods.

Tool Choice Matters: Evaluating edgeR vs. DESeq2 for Sensitivity, Robustness, and Cross-Study Performance Analysis of gene expression dynamics and differential expression in viral infections using generalized linear models and quasi-likelihood methods

Reference 7

Resolution: verified fuzzy; raw_fallback, observed 2026-05-21T15:50:19.497158Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-15T06:32:42.880941+00:00.

Observation 0f679d87-51c3-46e7-ae7d-588112e17759 · outbound

This paper cites Identifying Key Genes Involved in Axillary Lymph Node Metastasis in Breast Cancer Using Advanced RNA-Seq Analysis: A Methodological Approach with GLMQL and MAS.

Tool Choice Matters: Evaluating edgeR vs. DESeq2 for Sensitivity, Robustness, and Cross-Study Performance Identifying Key Genes Involved in Axillary Lymph Node Metastasis in Breast Cancer Using Advanced RNA-Seq Analysis: A Methodological Approach with GLMQL and MAS

Reference 8

Resolution: verified fuzzy; raw_fallback, observed 2026-05-21T15:50:19.513024Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-15T06:32:42.880941+00:00.

Observation 405c747d-0579-4038-8658-dedb213083af · outbound

This paper cites Machine Learning Analysis of RNA-Seq Data Identifies Key Gene Signatures and Pathways in Mpox Virus-Induced Gastrointestinal Complications Using Colon Organoid Models.

Tool Choice Matters: Evaluating edgeR vs. DESeq2 for Sensitivity, Robustness, and Cross-Study Performance Machine Learning Analysis of RNA-Seq Data Identifies Key Gene Signatures and Pathways in Mpox Virus-Induced Gastrointestinal Complications Using Colon Organoid Models

Reference 9

Resolution: verified fuzzy; raw_fallback, observed 2026-05-21T15:50:19.561267Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-15T06:32:42.880941+00:00.

Observation abe33d38-60e6-418f-b5a1-1f4df8649ea8 · outbound

This paper cites Machine learning-based analysis of Ebola virus’ impact on gene expression in nonhuman primates.

Tool Choice Matters: Evaluating edgeR vs. DESeq2 for Sensitivity, Robustness, and Cross-Study Performance Machine learning-based analysis of Ebola virus’ impact on gene expression in nonhuman primates

Reference 10

Resolution: verified fuzzy; raw_fallback, observed 2026-05-21T15:50:19.566812Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-15T06:32:42.880941+00:00.

Observation d1c6ea87-0566-4465-baab-6e32fa2436fc · outbound

This paper cites Mapping and quantifying mammalian transcriptomes by RNA-Seq.

Tool Choice Matters: Evaluating edgeR vs. DESeq2 for Sensitivity, Robustness, and Cross-Study Performance Mapping and quantifying mammalian transcriptomes by RNA-Seq

Reference 11

Resolution: verified fuzzy; raw_fallback, observed 2026-05-21T15:50:19.583824Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-15T06:32:42.880941+00:00.

Observation c626d4fb-2c5b-4eb3-818a-13c2f0410120 · outbound

This paper cites RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays.

Tool Choice Matters: Evaluating edgeR vs. DESeq2 for Sensitivity, Robustness, and Cross-Study Performance RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays

Reference 12

Resolution: verified fuzzy; raw_fallback, observed 2026-05-21T15:50:19.550518Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-15T06:32:42.880941+00:00.

Observation 2ce94a76-4f3e-4e4d-bd54-2b5546fe3059 · outbound

This paper cites A survey of best practices for RNA-seq data analysis.

Tool Choice Matters: Evaluating edgeR vs. DESeq2 for Sensitivity, Robustness, and Cross-Study Performance A survey of best practices for RNA-seq data analysis

Reference 13

Resolution: verified fuzzy; raw_fallback, observed 2026-05-21T15:50:19.535867Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-15T06:32:42.880941+00:00.

Observation 61d0664e-8e7f-4edd-9fd1-0f27023885d7 · outbound

This paper cites edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.

Tool Choice Matters: Evaluating edgeR vs. DESeq2 for Sensitivity, Robustness, and Cross-Study Performance edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

Reference 14

Resolution: verified fuzzy; raw_fallback, observed 2026-05-21T15:50:19.502489Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-15T06:32:42.880941+00:00.

Observation 3e4393f6-4fe2-4afb-9a25-2c6e1e295ef3 · outbound

This paper cites Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.

Tool Choice Matters: Evaluating edgeR vs. DESeq2 for Sensitivity, Robustness, and Cross-Study Performance Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Reference 15

Resolution: verified fuzzy; raw_fallback, observed 2026-05-21T15:50:19.581603Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-15T06:32:42.880941+00:00.

Observation 7d5ec314-0b1a-47fa-9ed4-fed7ff2058eb · outbound

This paper cites A scaling normalization method for differential expression analysis of RNA-seq data.

Tool Choice Matters: Evaluating edgeR vs. DESeq2 for Sensitivity, Robustness, and Cross-Study Performance A scaling normalization method for differential expression analysis of RNA-seq data

Reference 16

Resolution: verified fuzzy; raw_fallback, observed 2026-05-21T15:50:19.533553Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-15T06:32:42.880941+00:00.

Observation fc61ecd6-39fb-499f-b940-87be3365d5c0 · outbound

This paper cites Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation.

Tool Choice Matters: Evaluating edgeR vs. DESeq2 for Sensitivity, Robustness, and Cross-Study Performance Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

Reference 17

Resolution: verified fuzzy; raw_fallback, observed 2026-05-21T15:50:19.569457Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-15T06:32:42.880941+00:00.

Observation ede3ec65-8b77-4d22-b169-5e9ce84ba107 · outbound

This paper cites Detecting differential expression in RNA-sequence data using quasi-likelihood with shrunken dispersion estimates.

Tool Choice Matters: Evaluating edgeR vs. DESeq2 for Sensitivity, Robustness, and Cross-Study Performance Detecting differential expression in RNA-sequence data using quasi-likelihood with shrunken dispersion estimates

Reference 18

Resolution: verified fuzzy; raw_fallback, observed 2026-05-21T15:50:19.499284Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-15T06:32:42.880941+00:00.

Observation ee5f161f-769d-4ebe-8447-43315cf8d00d · outbound

This paper cites Differential expression analysis for sequence count data.

Tool Choice Matters: Evaluating edgeR vs. DESeq2 for Sensitivity, Robustness, and Cross-Study Performance Differential expression analysis for sequence count data

Reference 19

Resolution: verified fuzzy; raw_fallback, observed 2026-05-21T15:50:19.576855Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-15T06:32:42.880941+00:00.

Observation 94efff03-9b81-4e42-94ba-e0b9e836c929 · outbound

This paper cites Comparison of software packages for detecting differential expression in RNA-seq studies.

Tool Choice Matters: Evaluating edgeR vs. DESeq2 for Sensitivity, Robustness, and Cross-Study Performance Comparison of software packages for detecting differential expression in RNA-seq studies

Reference 20

Resolution: verified fuzzy; raw_fallback, observed 2026-05-21T15:50:19.574495Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-15T06:32:42.880941+00:00.

Observation 62f1ae0c-6473-4519-9932-1d19676aafb0 · outbound

This paper cites A comparative study of techniques for differential expression analysis on RNA-Seq data.

Tool Choice Matters: Evaluating edgeR vs. DESeq2 for Sensitivity, Robustness, and Cross-Study Performance A comparative study of techniques for differential expression analysis on RNA-Seq data

Reference 21

Resolution: verified fuzzy; raw_fallback, observed 2026-05-21T15:50:19.510276Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-15T06:32:42.880941+00:00.

Observation aac7f543-2be8-40c2-8a58-effb9045c46f · outbound

This paper cites Robustness of differential gene expression analysis of RNA-seq.

Tool Choice Matters: Evaluating edgeR vs. DESeq2 for Sensitivity, Robustness, and Cross-Study Performance Robustness of differential gene expression analysis of RNA-seq

Reference 22

Resolution: verified fuzzy; raw_fallback, observed 2026-05-21T15:50:19.517945Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-15T06:32:42.880941+00:00.

Observation b5b26c6c-4adf-4494-85cb-09bdb4b992de · outbound

This paper cites Three differential expression analysis methods for RNA sequencing: limma, EdgeR, DESeq2.

Tool Choice Matters: Evaluating edgeR vs. DESeq2 for Sensitivity, Robustness, and Cross-Study Performance Three differential expression analysis methods for RNA sequencing: limma, EdgeR, DESeq2

Reference 23

Resolution: verified fuzzy; raw_fallback, observed 2026-05-21T15:50:19.520077Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-15T06:32:42.880941+00:00.

Observation ccb79f95-f164-449e-a469-2483828bf404 · outbound

This paper cites Exaggerated false positives by popular differential expression methods when analyzing human population samples.

Tool Choice Matters: Evaluating edgeR vs. DESeq2 for Sensitivity, Robustness, and Cross-Study Performance Exaggerated false positives by popular differential expression methods when analyzing human population samples

Reference 24

Resolution: verified fuzzy; raw_fallback, observed 2026-05-21T15:50:19.586190Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-15T06:32:42.880941+00:00.

Observation 29ddc272-5981-4b89-95d5-07642bb64423 · outbound

This paper cites An evaluation of RNA-seq differential analysis methods.

Tool Choice Matters: Evaluating edgeR vs. DESeq2 for Sensitivity, Robustness, and Cross-Study Performance An evaluation of RNA-seq differential analysis methods

Reference 25

Resolution: verified fuzzy; raw_fallback, observed 2026-05-21T15:50:19.546227Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-15T06:32:42.880941+00:00.

Observation c4abddf5-8bb3-410e-a1f7-c2ca23c38b29 · outbound

This paper cites Differential anti-viral response to respiratory syncytial virus A in preterm and term infants.

Tool Choice Matters: Evaluating edgeR vs. DESeq2 for Sensitivity, Robustness, and Cross-Study Performance Differential anti-viral response to respiratory syncytial virus A in preterm and term infants

Reference 26

Resolution: verified fuzzy; raw_fallback, observed 2026-05-21T15:50:19.544094Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-15T06:32:42.880941+00:00.

Observation b2ca26bb-7a6c-4901-a734-d35fd3dcef5a · outbound

This paper cites Mpox infection protects against re-challenge in rhesus macaques.

Tool Choice Matters: Evaluating edgeR vs. DESeq2 for Sensitivity, Robustness, and Cross-Study Performance Mpox infection protects against re-challenge in rhesus macaques

Reference 27

Resolution: verified fuzzy; raw_fallback, observed 2026-05-21T15:50:19.484395Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-15T06:32:42.880941+00:00.

Observation 72756f0a-62e2-4eef-9fbc-ba2de9b0671c · outbound

This paper cites Comparative transcriptomics in Ebola Makona-infected ferrets, nonhuman primates, and humans.

Tool Choice Matters: Evaluating edgeR vs. DESeq2 for Sensitivity, Robustness, and Cross-Study Performance Comparative transcriptomics in Ebola Makona-infected ferrets, nonhuman primates, and humans

Reference 28

Resolution: verified fuzzy; raw_fallback, observed 2026-05-21T15:50:19.528453Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-15T06:32:42.880941+00:00.

Observation 2597c8a1-297b-4c37-9b33-353e50f62d76 · outbound

This paper cites Dysregulated transcriptional responses to SARS-CoV-2 in the periphery.

Tool Choice Matters: Evaluating edgeR vs. DESeq2 for Sensitivity, Robustness, and Cross-Study Performance Dysregulated transcriptional responses to SARS-CoV-2 in the periphery

Reference 29

Resolution: verified fuzzy; raw_fallback, observed 2026-05-21T15:50:19.505155Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-15T06:32:42.880941+00:00.

Observation 03abccd1-fe26-4119-879b-5a33e27c6ba4 · outbound

This paper cites RNA sequencing of transplant-stage idiopathic pulmonary fibrosis lung reveals unique pathway regulation.

Tool Choice Matters: Evaluating edgeR vs. DESeq2 for Sensitivity, Robustness, and Cross-Study Performance RNA sequencing of transplant-stage idiopathic pulmonary fibrosis lung reveals unique pathway regulation

Reference 30

Resolution: verified fuzzy; raw_fallback, observed 2026-05-21T15:50:19.492267Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-15T06:32:42.880941+00:00.

Observation bb0a8c9b-5ed2-416d-adf1-47a4c0aa8377 · outbound

This paper cites Transcriptomic signature differences between SARS-CoV-2 and influenza virus infected patients.

Tool Choice Matters: Evaluating edgeR vs. DESeq2 for Sensitivity, Robustness, and Cross-Study Performance Transcriptomic signature differences between SARS-CoV-2 and influenza virus infected patients

Reference 31

Resolution: verified fuzzy; raw_fallback, observed 2026-05-21T15:50:19.489713Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-15T06:32:42.880941+00:00.

Observation 9bad083b-e77e-4167-acd0-6876af7f52d9 · outbound

This paper cites Systems biological assessment of immunity to mild versus severe COVID-19 infection in humans.

Tool Choice Matters: Evaluating edgeR vs. DESeq2 for Sensitivity, Robustness, and Cross-Study Performance Systems biological assessment of immunity to mild versus severe COVID-19 infection in humans

Reference 32

Resolution: verified fuzzy; raw_fallback, observed 2026-05-21T15:50:19.579411Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-15T06:32:42.880941+00:00.

Observation e067db8e-c523-4a69-96d1-72e71c1fa457 · outbound

This paper cites Dysregulated transcriptional responses to SARS-CoV-2 in the periphery support novel diagnostic approaches.

Tool Choice Matters: Evaluating edgeR vs. DESeq2 for Sensitivity, Robustness, and Cross-Study Performance Dysregulated transcriptional responses to SARS-CoV-2 in the periphery support novel diagnostic approaches

Reference 33

Resolution: verified fuzzy; raw_fallback, observed 2026-05-21T15:50:19.507501Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-15T06:32:42.880941+00:00.

Observation f20190d2-68cd-4df3-9c82-7caceb4ef173 · outbound

This paper cites CD177, a specific marker of neutrophil activation, is associated with coronavirus disease 2019 severity and death.

Tool Choice Matters: Evaluating edgeR vs. DESeq2 for Sensitivity, Robustness, and Cross-Study Performance CD177, a specific marker of neutrophil activation, is associated with coronavirus disease 2019 severity and death

Reference 34

Resolution: verified fuzzy; raw_fallback, observed 2026-05-21T15:50:19.588923Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-15T06:32:42.880941+00:00.

Observation 1e28d6c6-c5e2-4f08-b07f-c9558f47baa7 · outbound

This paper cites When to use the B onferroni correction.

Tool Choice Matters: Evaluating edgeR vs. DESeq2 for Sensitivity, Robustness, and Cross-Study Performance When to use the B onferroni correction

Reference 35

Resolution: verified fuzzy; raw_fallback, observed 2026-05-21T15:50:19.522340Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-15T06:32:42.880941+00:00.

Observation 18f7f67e-106c-453d-895a-4e82a581be9c · outbound

This paper cites Comparing sets of patterns with the Jaccard index.

Tool Choice Matters: Evaluating edgeR vs. DESeq2 for Sensitivity, Robustness, and Cross-Study Performance Comparing sets of patterns with the Jaccard index

Reference 36

Resolution: verified fuzzy; raw_fallback, observed 2026-05-21T15:50:19.537982Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-15T06:32:42.880941+00:00.

Observation e183841e-2d44-47db-bf62-fdd4cfa20bb4 · outbound

This paper cites Pearson correlation coefficient.

Tool Choice Matters: Evaluating edgeR vs. DESeq2 for Sensitivity, Robustness, and Cross-Study Performance Pearson correlation coefficient

Reference 37

Resolution: verified fuzzy; raw_fallback, observed 2026-05-21T15:50:19.555304Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-15T06:32:42.880941+00:00.

Observation ae9c9339-cd9b-4edf-bb14-c2fef5287d97 · outbound

This paper cites Comparing the Pearson and Spearman correlation coefficients across distributions and sample sizes: A tutorial using simulations and empirical data.

Tool Choice Matters: Evaluating edgeR vs. DESeq2 for Sensitivity, Robustness, and Cross-Study Performance Comparing the Pearson and Spearman correlation coefficients across distributions and sample sizes: A tutorial using simulations and empirical data

Reference 38

Resolution: verified fuzzy; raw_fallback, observed 2026-05-21T15:50:19.515749Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-15T06:32:42.880941+00:00.

Observation 0e48fe46-a899-4e20-bf82-ceedf312e120 · outbound

This paper cites Principal component analysis.

Tool Choice Matters: Evaluating edgeR vs. DESeq2 for Sensitivity, Robustness, and Cross-Study Performance Principal component analysis

Reference 39

Resolution: verified fuzzy; raw_fallback, observed 2026-05-21T15:50:19.571761Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-15T06:32:42.880941+00:00.

Observation f014b1fb-02b8-4798-953b-fb3f99a910a7 · outbound

This paper cites On discriminative vs.

Tool Choice Matters: Evaluating edgeR vs. DESeq2 for Sensitivity, Robustness, and Cross-Study Performance On discriminative vs

Reference 40

Resolution: verified fuzzy; raw_fallback, observed 2026-05-21T15:50:19.494766Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-15T06:32:42.880941+00:00.

Observation 1b16a06d-e086-4570-8bd1-10099d8ab2c3 · outbound

This paper cites Probabilistic extension of precision, recall, and f1 score for more thorough evaluation of classification models.

Tool Choice Matters: Evaluating edgeR vs. DESeq2 for Sensitivity, Robustness, and Cross-Study Performance Probabilistic extension of precision, recall, and f1 score for more thorough evaluation of classification models

Reference 41

Resolution: verified fuzzy; raw_fallback, observed 2026-05-21T15:50:19.540002Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-15T06:32:42.880941+00:00.

Observation ba093feb-43e4-4729-91bd-fcac59e062f7 · outbound

This paper cites Benchmarking optimization software with performance profiles.

Tool Choice Matters: Evaluating edgeR vs. DESeq2 for Sensitivity, Robustness, and Cross-Study Performance Benchmarking optimization software with performance profiles

Reference 42

Resolution: verified fuzzy; raw_fallback, observed 2026-05-21T15:50:19.542032Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-15T06:32:42.880941+00:00.

Observation f086b330-d27a-4673-aad8-83c62752c1bb · outbound

This paper cites What is an ROC curve?; 2017.

Tool Choice Matters: Evaluating edgeR vs. DESeq2 for Sensitivity, Robustness, and Cross-Study Performance What is an ROC curve?; 2017

Reference 43

Resolution: verified fuzzy; raw_fallback, observed 2026-05-21T15:50:19.563845Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-15T06:32:42.880941+00:00.

Pith citing papers

Observation 068269d1-8e68-40e5-8d2e-296b7a5766d3 · inbound

Building an ASR Solution for Training and Assessing Children's Reading cites this paper.

Building an ASR Solution for Training and Assessing Children's Reading Tool Choice Matters: Evaluating edgeR vs. DESeq2 for Sensitivity, Robustness, and Cross-Study Performance

Reference 12

Resolution: metadata mismatch; local_arxiv, observed 2026-07-01T10:15:44.113241Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-15T06:32:42.880941+00:00.