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Paper Citation Record · LEDGER

Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations

As of 18 August 2026, this Paper Citation Record lists 100 of 172 outbound references and 0 inbound Pith citation observations for arXiv:2608.13355.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2608.13355 v1

Coverage vector

measured 100 of 172 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-14T13:04:39.805107Z

measured 100 of 100 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-18T06:34:40.430872+00:00

measured 0 of 0 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: cited_works

Reference resolution

100 of 172 outbound references displayed

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External citation measurements

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Outbound references

Observation 1d5a04ea-38b1-4d5f-a497-82f230614b7d · outbound

This paper cites and Cieplak, Piotr and Cornell, Wendy and Kollman, Peter A.

Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations and Cieplak, Piotr and Cornell, Wendy and Kollman, Peter A

Reference 1

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Observation fef0d954-47f8-4b4b-94af-56cd7e3a86e4 · outbound

This paper cites and Jack, David B.

Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations and Jack, David B

Reference 2

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Observation c3693050-8d55-4ee5-b568-7c379c911125 · outbound

This paper cites and Bayly, Christopher I.

Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations and Bayly, Christopher I

Reference 3

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This paper cites , title =.

Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations , title =

Reference 4

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Observation 4e5ca8fd-61a6-4143-afc7-5f1fa338ff14 · outbound

This paper cites and Cieplak, Piotr and Bayly, Christopher I.

Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations and Cieplak, Piotr and Bayly, Christopher I

Reference 5

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This paper cites Journal of Chemical Theory and Computation , volume =.

Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations Journal of Chemical Theory and Computation , volume =

Reference 6

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This paper cites and Montagud Andreu, Rub.

Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations and Montagud Andreu, Rub

Reference 7

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Observation c07a4dee-0805-40d4-8777-223129586577 · outbound

This paper cites Enhancing Electrostatic Embedding for.

Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations Enhancing Electrostatic Embedding for

Reference 8

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Observation 95f41ba7-23a3-4a05-bb69-ebdae4b7df2f · outbound

This paper cites and Gonz.

Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations and Gonz

Reference 9

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This paper cites Machine Learning in.

Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations Machine Learning in

Reference 10

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This paper cites Learning Atomic Multipoles: Prediction of the Electrostatic Potential with Equivariant Graph Neural Networks , journal =.

Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations Learning Atomic Multipoles: Prediction of the Electrostatic Potential with Equivariant Graph Neural Networks , journal =

Reference 11

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Observation 735b19a3-daea-45ae-a173-f3f360d11316 · outbound

This paper cites Machine Learning of Solvent Effects on Molecular Spectra and Reactions , journal =.

Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations Machine Learning of Solvent Effects on Molecular Spectra and Reactions , journal =

Reference 12

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This paper cites and Meuwly, Markus , title =.

Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations and Meuwly, Markus , title =

Reference 13

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Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations Unresolved cited work

Reference 14

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This paper cites The Journal of Physical Chemistry B , volume =.

Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations The Journal of Physical Chemistry B , volume =

Reference 15

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This paper cites Journal of Chemical Theory and Computation , volume =.

Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations Journal of Chemical Theory and Computation , volume =

Reference 16

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Observation 3ff47ea2-1ce9-46bb-a219-bbe58eaf0df6 · outbound

This paper cites Journal of Molecular Biology , volume =.

Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations Journal of Molecular Biology , volume =

Reference 17

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Observation 16ee7d1b-c289-47e6-9b65-b8f7c444bb0d · outbound

This paper cites and Bash, Paul A.

Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations and Bash, Paul A

Reference 18

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This paper cites Angewandte Chemie International Edition , volume =.

Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations Angewandte Chemie International Edition , volume =

Reference 19

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Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations Unresolved cited work

Reference 20

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Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations and Swart, Marcel , title =

Reference 21

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Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations , title =

Reference 22

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Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations and Wu, Chuanjie and Ren, Pengyu and Pande, Vijay S

Reference 23

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Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations and Huang, Jing and Roux, Beno

Reference 24

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Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations and Qi, Rui and Walker, Brandon D

Reference 25

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Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations The Journal of Chemical Physics , volume =

Reference 26

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Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations and Darden, Tom and Lee, Hsing and Pedersen, Lee G

Reference 27

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Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations and Pal, Rajat K

Reference 28

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Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations and Azimi, Solmaz and Khuttan, Sheenam and Deng, Nanjie and Gallicchio, Emilio , title =

Reference 29

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Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations and Chodera, John D

Reference 30

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Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations , title =

Reference 31

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Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations and Bayly, Christopher I

Reference 32

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Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations Unresolved cited work

Reference 33

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Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations Journal of Chemical Information and Modeling , volume =

Reference 34

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Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations and Beuming, Thijs and Pearlman, David A

Reference 35

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Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations Unresolved cited work

Reference 36

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Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations and Aldeghi, Matteo and Gapsys, Vytautas and Ntekoumes, Dimitris and Bosisio, Stefano and Papadourakis, Michail and Henriksen, Niel M

Reference 37

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Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations and Le Grand, Scott and Walker, Ross C

Reference 38

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Observation a060f250-632a-45cb-9250-434f5038d443 · outbound

This paper cites and Doerr, Stefan and Mirarchi, Antonio and Saban.

Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations and Doerr, Stefan and Mirarchi, Antonio and Saban

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This paper cites Multiscale Neural Network Potential with Anisotropic Message Passing for the Fast and Accurate Simulation of Protein Dynamics and Enzymatic Reactions , journal =.

Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations Multiscale Neural Network Potential with Anisotropic Message Passing for the Fast and Accurate Simulation of Protein Dynamics and Enzymatic Reactions , journal =

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Observation 384aab9a-c902-4130-aa7a-962f9756c833 · outbound

This paper cites 2025 , howpublished =.

Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations 2025 , howpublished =

Reference 41

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This paper cites 2023 , keywords =.

Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations 2023 , keywords =

Reference 42

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Observation 3260baae-354d-483f-abf1-ae89303c6768 · outbound

This paper cites Egret-1: Pretrained Neural Network Potentials for Efficient and Accurate Bioorganic Simulation.

Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations Egret-1: Pretrained Neural Network Potentials for Efficient and Accurate Bioorganic Simulation

Reference 43

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Observation b95b8f82-91b2-4f4e-ac52-3c58adc75e77 · outbound

This paper cites Journal of Chemical Theory and Computation , author =.

Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations Journal of Chemical Theory and Computation , author =

Reference 44

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Observation 0f4c6779-de92-444e-a452-5ff226272c5a · outbound

This paper cites Journal of Chemical Theory and Computation , author =.

Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations Journal of Chemical Theory and Computation , author =

Reference 45

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verified exact
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

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Observation 16e711a3-61da-4db2-ae46-c484b80d7b64 · outbound

This paper cites Journal of Physics: Condensed Matter , author =.

Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations Journal of Physics: Condensed Matter , author =

Reference 46

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Observation 2f7c1523-d24e-4a73-aefb-0cb9a7f53ec0 · outbound

This paper cites an unresolved cited work.

Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations Unresolved cited work

Reference 47

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This paper cites 2025 , pages =.

Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations 2025 , pages =

Reference 48

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verified exact
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

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Observation 79e41f5d-e1a8-4737-8d02-fb18622a052a · outbound

This paper cites The Journal of Chemical Physics , author =.

Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations The Journal of Chemical Physics , author =

Reference 49

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Observation d46a287d-a1c5-45ab-9ce2-272093a25f7a · outbound

This paper cites 2016 , pages =.

Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations 2016 , pages =

Reference 50

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Observation 9d7fd2b5-583b-4337-90e3-8a0bdd7d272d · outbound

This paper cites Orb: A Fast, Scalable Neural Network Potential.

Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations Orb: A Fast, Scalable Neural Network Potential

Reference 51

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Observation 31a25730-e69d-481a-8ec9-213f617e2dfc · outbound

This paper cites and others , month = jun, year =.

Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations and others , month = jun, year =

Reference 52

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Observation 241fcc6b-eb73-440d-adc6-e3ff8eb5ed97 · outbound

This paper cites and Kuryla, Domantas and Hart, Joseph and Kasoar, Elliott and Elena, Alin M.

Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations and Kuryla, Domantas and Hart, Joseph and Kasoar, Elliott and Elena, Alin M

Reference 53

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verified exact
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

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Observation afe34c49-31a4-424c-8fb5-845657538f3f · outbound

This paper cites an unresolved cited work.

Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations Unresolved cited work

Reference 54

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Observation 7031cea3-55d8-4313-b68b-5141bc016e8b · outbound

This paper cites Nature Communications , author =.

Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations Nature Communications , author =

Reference 55

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Observation 047c34d9-2ea5-4742-8999-66267c47dc32 · outbound

This paper cites 2025 , eprint=.

Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations 2025 , eprint=

Reference 56

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Observation 2857d995-40d6-4aee-b09a-676af31dd5d6 · outbound

This paper cites Physical Review Letters , volume =.

Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations Physical Review Letters , volume =

Reference 57

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source=arxiv_source observed=2026-08-14T13:04:39.581190Z digest=sha256:11de9e12a92dfc233b5ca5b1a05b17db8a02543ea5e7d191b010ffe779838d22

Observation 10e84fb5-07ff-4e06-8194-3494ba329382 · outbound

This paper cites Physical Review Letters , volume =.

Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations Physical Review Letters , volume =

Reference 58

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Observation 4316ee9f-c54a-4fef-a20a-2223a6908ed4 · outbound

This paper cites Chemical Science , volume =.

Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations Chemical Science , volume =

Reference 59

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Observation 40f2ae7b-332e-4293-ad30-1852dc4a55e4 · outbound

This paper cites Chemical Reviews , volume =.

Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations Chemical Reviews , volume =

Reference 60

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Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations ChemRxiv , year =

Reference 61

Resolution
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No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

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Observation 3151437f-dcc2-4d15-a61a-67646f2e21f8 · outbound

This paper cites and Gokey, Trevor and Dotson, David L.

Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations and Gokey, Trevor and Dotson, David L

Reference 62

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Observation fcb16afc-0532-43bc-b855-f4da909ba757 · outbound

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Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations 2025 , note =

Reference 63

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Observation eee8a5c7-507c-46dd-aaa8-00ed8174a0df · outbound

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Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations 2025 , eprint=

Reference 64

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Observation ef7ed532-67d9-45b4-bb82-ad9049e529c8 · outbound

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Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations 2024 , eprint=

Reference 65

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Observation 2ead710c-de2c-425e-8471-f4f2b3ad42f7 · outbound

This paper cites , title =.

Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations , title =

Reference 66

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Observation 9cb77fd9-cf84-4de8-8604-1c41baa3a199 · outbound

This paper cites Journal of Chemical Information and Modeling , volume =.

Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations Journal of Chemical Information and Modeling , volume =

Reference 67

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Observation 81f8134e-bf34-4bb8-9325-c92885a406b7 · outbound

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Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations doi:10.1145/3620665.3640366 , month = apr, publisher =

Reference 68

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Observation 6ef803ba-0190-422d-990a-cb1beaf51e4b · outbound

This paper cites an unresolved cited work.

Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations Unresolved cited work

Reference 69

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Observation 57ca7820-7d08-45b5-a3a0-5b37c5365d34 · outbound

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Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations npj Computational Materials , author =

Reference 70

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Observation 7531a0e7-2960-4dc9-a71b-62e3abfef3f1 · outbound

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Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations Nature Communications , author =

Reference 71

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Observation 0a8d292a-c2e0-4d9b-af70-733a379d085a · outbound

This paper cites Journal of Chemical Theory and Computation , author =.

Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations Journal of Chemical Theory and Computation , author =

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verified exact
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

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Observation e592187a-2a44-4665-8cd4-ce787918a006 · outbound

This paper cites 2025 , pages =.

Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations 2025 , pages =

Reference 73

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Unavailable: canonical work link unavailable.

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Observation 606dabc3-251d-441e-bc6b-d81e9566702c · outbound

This paper cites an unresolved cited work.

Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations Unresolved cited work

Reference 74

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Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations 2019 , pages =

Reference 75

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Observation 0be8a4ca-c5e7-4b32-838f-42a39e03af97 · outbound

This paper cites 2025 , pages =.

Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations 2025 , pages =

Reference 76

Resolution
verified exact
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

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Observation 9ad0b702-44f7-45dc-800c-804dcdc0b6ff · outbound

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Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations 2024 , eprint=

Reference 77

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Unavailable: canonical work link unavailable.

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Observation 619ea384-942e-4db5-98ef-f2bc48a1e805 · outbound

This paper cites 2024 , eprint=.

Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations 2024 , eprint=

Reference 78

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Source-reported events for the cited work

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This paper cites 2020 , pages =.

Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations 2020 , pages =

Reference 79

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Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations 2023 , eprint=

Reference 80

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Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations 2025 , eprint=

Reference 81

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Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations ACS Medicinal Chemistry Letters , author =

Reference 82

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Observation 07dce895-1d2a-4c6c-a29b-d6a97d648d1d · outbound

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Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations Nature Communications , author =

Reference 83

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Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations Journal of the American Chemical Society , author =

Reference 84

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Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations and Mishra, Adesh Rohan and Liu, Elliott and Ceder, Gerbrand and Miret, Santiago and Ong, Shyue Ping , title=

Reference 85

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This paper cites an unresolved cited work.

Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations Unresolved cited work

Reference 86

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Source-reported events for the cited work

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Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations Science , volume=

Reference 87

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Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations Unresolved cited work

Reference 88

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Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations and Riniker, Sereina and Cournia, Zoe , title =

Reference 89

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Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations Unresolved cited work

Reference 90

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This paper cites an unresolved cited work.

Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations Unresolved cited work

Reference 91

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Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations Unresolved cited work

Reference 92

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This paper cites an unresolved cited work.

Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations Unresolved cited work

Reference 93

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Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations Unresolved cited work

Reference 94

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Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations Unresolved cited work

Reference 95

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Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations Unresolved cited work

Reference 96

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Source-reported events for the cited work

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Observation 95d2d90d-aae9-49f1-9f68-8bda7a63509f · outbound

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Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations PLoS Comput

Reference 97

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Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations Unresolved cited work

Reference 98

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Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations Unresolved cited work

Reference 99

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Observation 3c6ccd9a-0f8c-4a52-a557-833bd0d029a2 · outbound

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Evaluating Electrostatic Embedding MLIP/MM for Relative Binding Free Energy Calculations Unresolved cited work

Reference 100

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Pith citing papers

No inbound Pith citation observations are available.