Paper Citation Record · LEDGER

iSEEtree: interactive explorer for hierarchical data

As of 20 August 2026, this Paper Citation Record lists 14 of 14 outbound references and 0 inbound Pith citation observations for arXiv:2412.02882.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2412.02882 v2

Coverage vector

measured 14 of 14 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-11T23:00:53.480023Z

measured 14 of 14 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-20T06:33:59.587034+00:00

measured 0 of 0 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: cited_works

Reference resolution

14 of 14 outbound references displayed

verified exact7
verified fuzzy5
unresolved2
parse uncertain0
malformed identifier0
metadata mismatch0

External citation measurements

No source-named external measurement is stored.

Outbound references

Observation f7c135f3-3472-4386-83f0-35c5e37192e6 · outbound

This paper cites Orchestrating single-cell analysis with bioconductor.

iSEEtree: interactive explorer for hierarchical data Orchestrating single-cell analysis with bioconductor

Reference 1

Resolution: verified exact; doi, observed 2026-08-11T23:00:53.637100Z

Source-reported events for the cited work

correction dated 2019-12-11. Source: crossref record 10.1038/s41592-019-0700-8->10.1038/s41592-019-0654-x:correction, observed 2026-07-11T03:02:43.4585+00:00. This notice travels one citation hop only.

Observation 00b9b24d-2b2a-47b3-9aa4-e286012462fe · outbound

This paper cites miaDash: Shiny app for interactive analysis and exploration of microbiome data, 2024.

iSEEtree: interactive explorer for hierarchical data miaDash: Shiny app for interactive analysis and exploration of microbiome data, 2024

Reference 2

Resolution: verified fuzzy; raw_fallback, observed 2026-08-11T23:00:53.839213Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-20T06:33:59.587034+00:00.

Observation 28db1499-f93c-4379-a572-338901ca925c · outbound

This paper cites Ernst, Sudarshan A.

iSEEtree: interactive explorer for hierarchical data Ernst, Sudarshan A

Reference 3

Resolution: verified fuzzy; raw_fallback, observed 2026-08-11T23:00:53.822485Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-20T06:33:59.587034+00:00.

Observation 77be4d9a-990f-4b3d-b8db-2d12a81d4f04 · outbound

This paper cites shiny: Web Application Framework for R, 2024.

iSEEtree: interactive explorer for hierarchical data shiny: Web Application Framework for R, 2024

Reference 4

Resolution: verified fuzzy; raw_fallback, observed 2026-08-11T23:00:53.806287Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-20T06:33:59.587034+00:00.

Observation 3d35710e-2058-437e-9c1e-a54dc93f6117 · outbound

This paper cites Bioconductor: open software development for computational biology and bioinformatics.

iSEEtree: interactive explorer for hierarchical data Bioconductor: open software development for computational biology and bioinformatics

Reference 5

Resolution: unresolved; no resolver link, observed 2026-08-11T23:00:53.428714Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation e90fdbdb-3101-4852-88f8-2ce556afe8f1 · outbound

This paper cites Microbiome datasets are compositional: and this is not optional.

iSEEtree: interactive explorer for hierarchical data Microbiome datasets are compositional: and this is not optional

Reference 6

Resolution: verified exact; raw_fallback, observed 2026-08-11T23:00:53.736124Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-20T06:33:59.587034+00:00.

Observation 7f5745a2-0d38-4c3c-a2c4-f1ca2872b1c6 · outbound

This paper cites Treesummarizedexperiment: a s4 class for data with hierarchical structure.

iSEEtree: interactive explorer for hierarchical data Treesummarizedexperiment: a s4 class for data with hierarchical structure

Reference 7

Resolution: verified exact; doi, observed 2026-08-11T23:00:53.603263Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-20T06:33:59.587034+00:00.

Observation aa1a6967-fe04-47b9-b58e-e137f3b0721c · outbound

This paper cites Orchestrating microbiome analysis with bioconductor [beta version], 2021.

iSEEtree: interactive explorer for hierarchical data Orchestrating microbiome analysis with bioconductor [beta version], 2021

Reference 8

Resolution: verified fuzzy; raw_fallback, observed 2026-08-11T23:00:53.790502Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-20T06:33:59.587034+00:00.

Observation 72d0449f-4370-4869-808a-70b6880f16fb · outbound

This paper cites Shiny-phyloseq: Web application for interactive microbiome analysis with provenance tracking.

iSEEtree: interactive explorer for hierarchical data Shiny-phyloseq: Web application for interactive microbiome analysis with provenance tracking

Reference 9

Resolution: verified exact; doi, observed 2026-08-11T23:00:53.585306Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-20T06:33:59.587034+00:00.

Observation b07ab2f7-3a2c-4224-92ec-8f91b1149608 · outbound

This paper cites SummarizedExperiment: SummarizedExperiment container, 2024.

iSEEtree: interactive explorer for hierarchical data SummarizedExperiment: SummarizedExperiment container, 2024

Reference 10

Resolution: verified fuzzy; raw_fallback, observed 2026-08-11T23:00:53.771900Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-20T06:33:59.587034+00:00.

Observation 7d8f3e76-7d2f-4d5b-b49b-666ffa522017 · outbound

This paper cites R: A Language and Environment for Statistical Computing.

iSEEtree: interactive explorer for hierarchical data R: A Language and Environment for Statistical Computing

Reference 11

Resolution: unresolved; no resolver link, observed 2026-08-11T23:00:53.463535Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 6360e6b4-1db6-478e-bcc4-2e845671f78a · outbound

This paper cites isee: interactive summarizedexperiment explorer.

iSEEtree: interactive explorer for hierarchical data isee: interactive summarizedexperiment explorer

Reference 12

Resolution: verified exact; doi, observed 2026-08-11T23:00:53.566819Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-20T06:33:59.587034+00:00.

Observation cb1af342-5736-4090-8cda-8ec5e1538829 · outbound

This paper cites Gut microbiota from persons with attention-deficit/hyperactivity disorder affects the brain in mice.

iSEEtree: interactive explorer for hierarchical data Gut microbiota from persons with attention-deficit/hyperactivity disorder affects the brain in mice

Reference 13

Resolution: verified exact; doi, observed 2026-08-11T23:00:53.547870Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-20T06:33:59.587034+00:00.

Observation d9c7a4ae-c39c-47c1-b914-7d1805d61c40 · outbound

This paper cites Evan Johnson.

iSEEtree: interactive explorer for hierarchical data Evan Johnson

Reference 14

Resolution: verified exact; doi, observed 2026-08-11T23:00:53.526475Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-20T06:33:59.587034+00:00.

Pith citing papers

No inbound Pith citation observations are available.