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Paper Citation Record · LEDGER

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking

As of 17 August 2026, this Paper Citation Record lists 100 of 126 outbound references and 0 inbound Pith citation observations for arXiv:2502.02371.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2502.02371 v2

Coverage vector

measured 100 of 126 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-09T12:29:03.590276Z

measured 100 of 100 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-17T06:30:58.91139+00:00

measured 0 of 0 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: cited_works

Reference resolution

100 of 126 outbound references displayed

  • verified exact0
  • verified fuzzy40
  • unresolved60
  • parse uncertain0
  • malformed identifier0
  • metadata mismatch0

External citation measurements

No source-named external measurement is stored.

Outbound references

Observation 6dc1382c-f517-4ef4-92f5-885cebff8ee1 · outbound

This paper cites an unresolved cited work.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Unresolved cited work

Reference 1

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.034442Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.034442Z digest=sha256:7591e7f9949f66767543d7e976387530667b990282689770e6fb42a44a7359e7

Observation 040c532c-654b-4824-b8ff-143400b29a0a · outbound

This paper cites druggable.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking druggable

Reference 2

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.040408Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.040408Z digest=sha256:b2aa8b72868df09a5c9d11b89131b9d1b4344ff1c35230b422a8c1630ccd72f4

Observation 2c3c0967-2537-45ae-b683-b3342c536bb0 · outbound

This paper cites an unresolved cited work.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Unresolved cited work

Reference 3

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.045860Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.045860Z digest=sha256:4b786d163ae76f2dd486a6abc8adc6a98a0dd24d8d57b22aca6b3da75cef567d

Observation 1eeaeb8a-b60b-49da-a6eb-0ab75b2681ac · outbound

This paper cites A.; Li, Y .; Wu, D.; Li, X.; Li, C.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking A.; Li, Y .; Wu, D.; Li, X.; Li, C

Reference 4

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.051492Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.051492Z digest=sha256:71e0ee1b336d86f3d8f19c20d1360fc8aa958b3444824396098e0f83514edb79

Observation 41ae0544-56f2-41b4-910a-0d51b4378722 · outbound

This paper cites an unresolved cited work.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Unresolved cited work

Reference 5

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.056885Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.056885Z digest=sha256:8a698d4532632bf2fe36b068122ff42f588c40bd867f5475cb5464e49f06850c

Observation f132a464-daff-45ee-9625-06d3e634c44f · outbound

This paper cites Molecular docking: challenges, advances and its use in drug discovery perspective.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Molecular docking: challenges, advances and its use in drug discovery perspective

Reference 6

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.062288Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.062288Z digest=sha256:2a5a82793882c1ac915bd1e63135a949fdabadc40d1c9d1fec21101289ee5f30

Observation b2d5bb37-3953-4ff0-b4f2-18d66d7c252f · outbound

This paper cites Docking, virtual high throughput screening and in silico fragment-based drug design.Journal of cellular and molecular medicine 2009,13, 238–248.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Docking, virtual high throughput screening and in silico fragment-based drug design.Journal of cellular and molecular medicine 2009,13, 238–248

Reference 7

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.067859Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.067859Z digest=sha256:8e05d30e003be31d1c12cb57ac3dab0aedbbf4c8f05f04f01c1190b49a227a94

Observation 108ebba7-7502-4406-9671-6add73fe6a61 · outbound

This paper cites Structure-based virtual screening for drug discovery: principles, applications and recent advances.Current topics in medicinal chemistry2014,14, 1923–1938.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Structure-based virtual screening for drug discovery: principles, applications and recent advances.Current topics in medicinal chemistry2014,14, 1923–1938

Reference 8

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.073690Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.073690Z digest=sha256:42b0f019e02f60dd1195bf84f3084aa069a8303822eec4930d9a401f9a2341fb

Observation ed1e8891-ae0f-4b6e-bc0b-c1ad8e4ba74c · outbound

This paper cites L.An introduction to medicinal chemistry; Oxford university press, 2023.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking L.An introduction to medicinal chemistry; Oxford university press, 2023

Reference 9

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.079864Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.079864Z digest=sha256:90bb8cc023b9d4484f89cb833fba71a5485d1b112ff6719eb025030cdd737b21

Observation 80e9ef6e-b14a-4625-837f-8bbce0e78a3b · outbound

This paper cites Y .; Al- tuzar, V .; Vivanco-Cid, H.; Mendoza-Barrera, C.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Y .; Al- tuzar, V .; Vivanco-Cid, H.; Mendoza-Barrera, C

Reference 10

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.086297Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.086297Z digest=sha256:2953e546bc41b1c8f818761d6b5d23e9e5902468fc35bcf354d06cc0be4334e9

Observation 3d350b37-4880-42cb-8a4a-24673eb4b42d · outbound

This paper cites an unresolved cited work.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Unresolved cited work

Reference 11

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.096814Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.096814Z digest=sha256:c05ef6aef3c1060aa5919385860adf619a170d109de81bf6fade9c8a89bbf5d2

Observation 5ea4b164-55b0-496d-b118-725ba963aa3b · outbound

This paper cites F.; Forli, S.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking F.; Forli, S

Reference 12

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.102990Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.102990Z digest=sha256:d7a73e3422e4194d3411ba87e375d2859eb7ceefec902f693802fd51e6e51e45

Observation 44522eb4-e7ff-493e-88fe-1668a79ae39c · outbound

This paper cites L.; Cole, J.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking L.; Cole, J

Reference 13

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.108750Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.108750Z digest=sha256:dffc01f7780c932c5ad8ea4cf6f7449645ecd0f380814b3e4cd9848e626bc333

Observation 86a542ce-cb34-4465-80ab-5b9ea652e1d8 · outbound

This paper cites A.; Banks, J.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking A.; Banks, J

Reference 14

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.115530Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.115530Z digest=sha256:1f21ee8d784354f2b8a801aab855ee6860bce26be829ce58f9113da5fb1295e3

Observation 3beec76e-a158-4e1c-a730-be6839c547f3 · outbound

This paper cites an unresolved cited work.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Unresolved cited work

Reference 15

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.122176Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.122176Z digest=sha256:e3538c5730527004238a3f4ce2a6bbdeb386061fff8067cec1f84d5c702fc60f

Observation 12cabb24-7a9a-4479-9c45-d37c21d97710 · outbound

This paper cites an unresolved cited work.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Unresolved cited work

Reference 16

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.128776Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.128776Z digest=sha256:ff88a67e310a56165a2e8f75e025cba0864739eeb315b18938db9fac563b8685

Observation 4ac8bec2-28ce-4572-bdc9-e8eb4d3e435c · outbound

This paper cites M.; Alhossary, A.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking M.; Alhossary, A

Reference 17

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.134076Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.134076Z digest=sha256:9d37745587c6d6eba02faa63d23ea290d0161ba628368e225efe574cba033419

Observation b8212f42-727d-4f71-9f99-d389f07ee230 · outbound

This paper cites R.; Baumgartner, M.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking R.; Baumgartner, M

Reference 18

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.138745Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.138745Z digest=sha256:94867068ef08958b1dfd4d3a8d46d56325822858e7e84787d30a988bb99ab4dd

Observation d0530909-79be-4d98-878d-8f312f34159b · outbound

This paper cites Predicting protein structure from single se- quences.Nature Computational Science2022,2, 775– 776.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Predicting protein structure from single se- quences.Nature Computational Science2022,2, 775– 776

Reference 19

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.143820Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.143820Z digest=sha256:3e8711af77f2a1b3d40176db374e2d296e45297e44849abc979f89fdb4cd76fc

Observation 6412ec1c-0010-44b9-8bf7-aa52bc1cc125 · outbound

This paper cites nature2021,596, 583–589.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking nature2021,596, 583–589

Reference 20

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.148081Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.148081Z digest=sha256:21541b42d09dc2bc3f711f070b8271e78661ee0e9eb05f3bba033e8859a5d211

Observation dd2c4831-0f0f-447f-ad9f-862d31153337 · outbound

This paper cites ColabFold: making protein folding accessible to all.Nature methods2022, 19, 679–682.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking ColabFold: making protein folding accessible to all.Nature methods2022, 19, 679–682

Reference 21

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.152564Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.152564Z digest=sha256:293ef46ccf83d1c0c969f867dec0526fca8d5574f7872c1e79e3b295fde7802e

Observation 9012bb5d-0aaa-4611-9110-aab4ff852463 · outbound

This paper cites an unresolved cited work.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Unresolved cited work

Reference 22

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.157602Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.157602Z digest=sha256:bbd2a194b6cc733bc08ca3955e6ccc975ff88b29d56675bf703641d7ccde00ae

Observation 02097b08-020a-4c95-a46f-f0f88012d5c1 · outbound

This paper cites R.; Wang, J.; Cong, Q.; Kinch, L.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking R.; Wang, J.; Cong, Q.; Kinch, L

Reference 23

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.163617Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.163617Z digest=sha256:b0ae5540e959eebdff40ceca5b7b019deccf7a05e27ddf63a8309bb32ac270e6

Observation 037368d5-b879-4d25-93c0-8881d223d24f · outbound

This paper cites P.; Al-Lazikani, B.; Hopkins, A.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking P.; Al-Lazikani, B.; Hopkins, A

Reference 24

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.169336Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.169336Z digest=sha256:a8d0ffb47deb98aab50ee4824072967b6327ffac87c71b3f1d0a2396dd21f958

Observation ece0f697-1d30-42bb-826d-84cacbd18cc8 · outbound

This paper cites P.; Donadi, R.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking P.; Donadi, R

Reference 25

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.174721Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.174721Z digest=sha256:90fd0b7be6c6179be2e1a17acb93594961b1a6389b16f450e4d956d8e3fb4ce4

Observation 541de415-b148-4882-9ea7-41f86607eb33 · outbound

This paper cites an unresolved cited work.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Unresolved cited work

Reference 26

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.180298Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.180298Z digest=sha256:776087a04f0b8e25c7676607de6e5b0177ee544e36fdef498f574c4deca785df

Observation 4f60b59d-0567-4b8d-a718-8136fcadbf61 · outbound

This paper cites S.; Barton, G.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking S.; Barton, G

Reference 27

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.185709Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.185709Z digest=sha256:90433e70fef500e16e33aef6cdc9686e450b745a18bd79c56190751c2ccb6089

Observation d9813dbb-8cf9-4144-ac08-2b90e7a621e6 · outbound

This paper cites DiffBindFR: an SE(3) equivariant network for flexible protein-ligand docking.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking DiffBindFR: an SE(3) equivariant network for flexible protein-ligand docking

Reference 28

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.197064Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.197064Z digest=sha256:cac0a3d4f4a052f358fbd3381ed3ac465d6690f0080bd37b816d0221668ef5d6

Observation 8e78ff71-a550-4423-a1fc-9b58e4066a83 · outbound

This paper cites M.; Deane, C.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking M.; Deane, C

Reference 29

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.203127Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.203127Z digest=sha256:ef4a3dd780c0917c34386fd7e600248995410b247ea31ec7eb354d25cc3d5bde

Observation f24b68c1-a36b-4223-84f9-1a526bf18bfb · outbound

This paper cites an unresolved cited work.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Unresolved cited work

Reference 30

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.208496Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.208496Z digest=sha256:9a10294583e755bc698275408188855a4cfd6d6da3f17c290d4f48947eebfad4

Observation 1d1ea6fa-5ecd-4bea-ba2c-b4c9492d4e2f · outbound

This paper cites an unresolved cited work.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Unresolved cited work

Reference 31

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.215823Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.215823Z digest=sha256:2ccb8d769d52fbbc369cef7fae2fcffaf1493821312bb9b68b06fb938361f04e

Observation e1aa0e54-a57c-492f-9e43-17f9aebb28a4 · outbound

This paper cites Deep Learning for Protein-Ligand Docking: Are We There Yet? ICML AI4Science Workshop.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Deep Learning for Protein-Ligand Docking: Are We There Yet? ICML AI4Science Workshop

Reference 32

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.221777Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.221777Z digest=sha256:68a3a7af8908e2c1026f6895c02af9912b3ceb8a93c6af2f3341e26a73c1364a

Observation 11d97ce4-b65d-4589-b5ef-ecaea2875a78 · outbound

This paper cites an unresolved cited work.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Unresolved cited work

Reference 33

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.227505Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.227505Z digest=sha256:d59ffa4a86da0851de953bb7786b908cf7b99de01b825a7061db57feabd9ed21

Observation 39abcddd-dcb0-4dc0-9efd-17347e9deebc · outbound

This paper cites J.; Verdonk, M.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking J.; Verdonk, M

Reference 34

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.233001Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.233001Z digest=sha256:a0c297a810e140120ab647bc67b918e93d19a93c12b24be3fcb78b473a911b82

Observation 5b185134-5467-4e20-8637-510a03df0e03 · outbound

This paper cites COFACTOR: An Accu- rate Comparative Algorithm for Structure-Based Protein Function Annotation.Nucleic Acids Res.2012,40, W471–W477.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking COFACTOR: An Accu- rate Comparative Algorithm for Structure-Based Protein Function Annotation.Nucleic Acids Res.2012,40, W471–W477

Reference 35

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.238400Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.238400Z digest=sha256:88e4a30c49d5676b09925bf0ebb8f1e6f8c0151a3f231a3d86e99157f82aba36

Observation 51b5e462-a034-4df8-abad-a2fdf9dea67a · outbound

This paper cites LIGSITE csc: predicting ligand binding sites using the Connolly surface and degree of conservation.BMC Structural Biology2006, 6, 1–11.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking LIGSITE csc: predicting ligand binding sites using the Connolly surface and degree of conservation.BMC Structural Biology2006, 6, 1–11

Reference 36

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.244282Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.244282Z digest=sha256:606b09050f2bb59ccf318d6b8df69818ac09e576c5fc7ef177266efadd01f252

Observation 3c91afd1-5255-458d-9aea-f31037ebd52b · outbound

This paper cites Fpocket: An Open Source Platform for Ligand Pocket Detection.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Fpocket: An Open Source Platform for Ligand Pocket Detection

Reference 37

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.249054Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.249054Z digest=sha256:ecf6fed24171445c7616da54659ea8b3871e7ae4bb4ff405ba1aeb589906d705

Observation 4f1f6045-f044-4c48-8177-cf6f25713565 · outbound

This paper cites LIGSITE: Automatic and Efficient Detection of Potential Small Molecule-Binding Sites in Proteins.J.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking LIGSITE: Automatic and Efficient Detection of Potential Small Molecule-Binding Sites in Proteins.J

Reference 38

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.254064Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.254064Z digest=sha256:6a15f181e5f2cf8111fa5493c971e595d16da10372bc20969126965675b9b052

Observation 2c18825e-a7a3-4125-8325-baed2ac439b7 · outbound

This paper cites an unresolved cited work.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Unresolved cited work

Reference 39

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.259056Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.259056Z digest=sha256:52b398efa84b1d7db0b7e621a37cc008026e4b38ebb3827c5e4304ed0c799ade

Observation 143ea62b-7e53-422a-854b-a53fe2fdc245 · outbound

This paper cites G.; Banaszak, L.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking G.; Banaszak, L

Reference 40

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.264010Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.264010Z digest=sha256:02922b3c7e895f0c6915b4f26ca722d17b364961c3457d815919fda5547a6f8c

Observation bcec8447-779e-4c0b-b53b-9aa5ff6f5abc · outbound

This paper cites J.; Jones, T.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking J.; Jones, T

Reference 41

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.269726Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.269726Z digest=sha256:c5af295a1ce0b87f95555b1a36ed545698551f5889bc0d0174ad72c4d07b586c

Observation 7927bfd5-77de-4e5b-91c4-6e65aa2dcd21 · outbound

This paper cites Anatomy of Protein Pockets and Cavities: Measurement of Binding Site Geometry and Implications for Ligand Design.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Anatomy of Protein Pockets and Cavities: Measurement of Binding Site Geometry and Implications for Ligand Design

Reference 42

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.274736Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.274736Z digest=sha256:2d86b3c34830a05c610677d86c102a307c2af786052f7c16459983df8aee767c

Observation 7a61fa6a-e626-47cb-9d48-77a18dc22179 · outbound

This paper cites an unresolved cited work.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Unresolved cited work

Reference 43

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.280599Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.280599Z digest=sha256:29cb8ba31d01137dc21432377ff6cd9790c3d81a0f416047e742a7db00f86550

Observation d704f1e6-ddd8-4055-a18b-d9e7724fbf04 · outbound

This paper cites PocketPicker: Analysis of Ligand Binding-Sites with Shape Descrip- tors.Chem.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking PocketPicker: Analysis of Ligand Binding-Sites with Shape Descrip- tors.Chem

Reference 44

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.286159Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.286159Z digest=sha256:063cea8f6cff778405e760a1d9ded2326ca9c98b5b3a46aed846d1e581b50fd6

Observation 22d61623-5a2b-4016-9bd3-c641c20ae32d · outbound

This paper cites Pocketome via Com- prehensive Identification and Classification of Ligand Binding Envelopes.Mol.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Pocketome via Com- prehensive Identification and Classification of Ligand Binding Envelopes.Mol

Reference 45

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.291520Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.291520Z digest=sha256:75ee19d07172e42a02a17f31b0e4cc6f9fce7d720527c5d7db6c235fd9ad88d0

Observation 9a5d1904-80c1-4605-83ed-e141d4b30c78 · outbound

This paper cites an unresolved cited work.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Unresolved cited work

Reference 46

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.296883Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.296883Z digest=sha256:149a2df048b43ec6d538117767c0d05488f694a9a8f42847d32ba7186b3033a5

Observation f166ebfe-dd83-4fc5-b9ae-4b10157f91b1 · outbound

This paper cites Druggable.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Druggable

Reference 47

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:05.420067Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.304035Z digest=sha256:3780663ddf63498b0f2c2d8dfebc727111c33dcdd83cc66a0bc029448152e228

Observation 2c5db42d-98e6-4fa2-97f8-015b09f41c79 · outbound

This paper cites an unresolved cited work.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Unresolved cited work

Reference 48

Resolution
unresolved
raw_fallback, observed 2026-08-09T12:29:05.392523Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.310788Z digest=sha256:6fd5cacc454a4fce64b12822a0bf823a7b741211e9da93738913db1db83b0515

Observation e52efdc4-9018-498b-a9a5-5dc6128a0da5 · outbound

This paper cites EasyMIFS and SiteHound: A Toolkit for the Identification of Ligand-Binding Sites in Protein Structures.Bioinformatics2009,25, 3185– 3186.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking EasyMIFS and SiteHound: A Toolkit for the Identification of Ligand-Binding Sites in Protein Structures.Bioinformatics2009,25, 3185– 3186

Reference 49

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:05.366549Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.316183Z digest=sha256:abf77d8506625115de8f61dd192d1153741d1f915319b5d9da93e68da5de4a50

Observation 6aef3b2c-661e-46ee-ac8c-ed921c37e584 · outbound

This paper cites E.; Beglov, D.; Villar, E.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking E.; Beglov, D.; Villar, E

Reference 50

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:05.347545Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.321458Z digest=sha256:7a725f754163a9b76c35e190e17f5988a958ef145325c111803e4048ba905bb6

Observation ae506a8b-1a40-42d5-9836-a85d07de2f55 · outbound

This paper cites ConSurf: An Algo- rithmic Tool for the Identification of Functional Regions in Proteins by Surface Mapping of Phylogenetic Infor- mation.J.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking ConSurf: An Algo- rithmic Tool for the Identification of Functional Regions in Proteins by Surface Mapping of Phylogenetic Infor- mation.J

Reference 51

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:05.327414Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.326865Z digest=sha256:b99f2a437c17b353c0a47adc6d41c08e5161b375d72984b8b72c9aef0b418b6d

Observation 9fda2945-1c5a-4159-8a01-0d4b405b49c4 · outbound

This paper cites E.; Mayrose, I.; Glaser, F.; Ben- Tal, N.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking E.; Mayrose, I.; Glaser, F.; Ben- Tal, N

Reference 52

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:05.307952Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.331887Z digest=sha256:7a4ac8a9c33c085e5140418fd898c43a52147139894e1d09fc88e39ccb0ecd53

Observation ba8cc2c2-1307-4aed-bdeb-43cd20d56d62 · outbound

This paper cites Ligand-Binding Site Pre- diction Using Ligand-Interacting and Binding Site- Enriched Protein Triangles.Bioinformatics2012,28, 1579–1585.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Ligand-Binding Site Pre- diction Using Ligand-Interacting and Binding Site- Enriched Protein Triangles.Bioinformatics2012,28, 1579–1585

Reference 53

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:05.285375Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.336668Z digest=sha256:817bfb1a55a31e54344dc13279286c7fe2dbc6d294fecb5680a7f11f5f954bfd

Observation 9b1adb1b-e170-4612-a234-ef26b097dc2b · outbound

This paper cites J.; Barton, G.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking J.; Barton, G

Reference 54

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:05.262545Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.341622Z digest=sha256:8adcc116b742315d79e736de123c9d01328fb32290a78fc3a1336db183b87a23

Observation af9d6e30-1024-412e-ae54-ec350c7bbdf3 · outbound

This paper cites N.; Kelley, L.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking N.; Kelley, L

Reference 55

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:05.239713Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.346816Z digest=sha256:14c18fd1557f000ad912bcba74da0f545027c2d7f8d36a9639a7ea5fdbcec634

Observation 30d58926-7198-4740-b21c-54ad5eeff24c · outbound

This paper cites Protein–Ligand Bind- ing Site Recognition Using Complementary Binding- Specific Substructure Comparison and Sequence Profile Alignment.Bioinformatics2013,29, 2588–2595.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Protein–Ligand Bind- ing Site Recognition Using Complementary Binding- Specific Substructure Comparison and Sequence Profile Alignment.Bioinformatics2013,29, 2588–2595

Reference 56

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:05.196956Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.351809Z digest=sha256:69415711a87441c8b7c8bf34af4c7a7fcd837be27bf22557641ac2f9a9ff7c5a

Observation 4b1ee70e-2dc3-439d-bcbf-08e5a247dfff · outbound

This paper cites Ligand Binding Site Detection by Local Structure Alignment and Its Performance Com- plementarity.J.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Ligand Binding Site Detection by Local Structure Alignment and Its Performance Com- plementarity.J

Reference 57

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:05.173276Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.356298Z digest=sha256:4d4a15af9b45a61ba8ac5e8f7a7004e016f0b79aaedb23fabd4f20de19bd7e88

Observation 0c8f9ba6-ebf5-42f9-b89b-37845764c537 · outbound

This paper cites an unresolved cited work.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Unresolved cited work

Reference 58

Resolution
unresolved
raw_fallback, observed 2026-08-09T12:29:05.142260Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.361009Z digest=sha256:2ed33bba34ca1446b6f4b649a37b7daa77973a52f297ba095dfde685e921bebf

Observation a10c59a0-3ae1-4d07-a316-da0a36303877 · outbound

This paper cites E.; Bechor- Shental, D.; Martz, E.; Ben-Tal, N.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking E.; Bechor- Shental, D.; Martz, E.; Ben-Tal, N

Reference 59

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:05.116632Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.366611Z digest=sha256:e6a5751ce20f236de5ab85030ac7797e5f8ba58a4fc0b09ecfa237096c4d551f

Observation ef862757-4822-4cd6-81e8-813a52946e3e · outbound

This paper cites an unresolved cited work.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Unresolved cited work

Reference 60

Resolution
unresolved
raw_fallback, observed 2026-08-09T12:29:05.087551Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.371474Z digest=sha256:12afc868ed0f2f734f1ae2f9de3f9601d071bd8fe98f8f97922109ae0479b708

Observation 8f374d8f-6153-4b15-9a96-3476b4ab58b2 · outbound

This paper cites A.; Laskowski, R.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking A.; Laskowski, R

Reference 61

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:05.067326Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.376363Z digest=sha256:82696bb93e448535d5ea584d86596cb309a27f7c5025d9f66ab711459a16c971

Observation ea7a6d47-5b2d-4375-ae36-f9298fea4c62 · outbound

This paper cites MetaPocket: A Meta Approach to Improve Protein Ligand Binding Site Prediction.OMICS2009, 13, 325–330.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking MetaPocket: A Meta Approach to Improve Protein Ligand Binding Site Prediction.OMICS2009, 13, 325–330

Reference 62

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:05.042387Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.381360Z digest=sha256:049bb58b98b3a3a937e56b22f5605fd1ef155000cb8dd390cf0c92984fd522c6

Observation 4cac8924-3815-4af8-b7ff-33624c9063ab · outbound

This paper cites D.; Blundell, T.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking D.; Blundell, T

Reference 63

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:05.018287Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.387080Z digest=sha256:8d1090e9021f6912a819099d82daf3ce21ce41fa8ff3c69feabce37cb050fe60

Observation 01474845-5f1e-4bb0-ac6f-2c5894a5ea43 · outbound

This paper cites FINDSITE: A Threading- Based Approach to Ligand Homology Modeling.PLoS Comput.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking FINDSITE: A Threading- Based Approach to Ligand Homology Modeling.PLoS Comput

Reference 64

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:04.991446Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.392997Z digest=sha256:3499e15d1a6657ea29949f34042370c218b3c6c4154b28029aed47d9d330f647

Observation f3b45d75-1ebb-4b02-ae6e-7f657d1df1b3 · outbound

This paper cites Science2020,368, 1499–1504.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Science2020,368, 1499–1504

Reference 65

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:04.972171Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.398470Z digest=sha256:c4cbe753107075ce65065a725f25b9bb4ef3dd834618210afc7daeb107963651

Observation 0f648427-ec34-47dd-8407-c5474af8267a · outbound

This paper cites R.; Studer, G.; Tauriello, G.; Water- house, A.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking R.; Studer, G.; Tauriello, G.; Water- house, A

Reference 66

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:04.953381Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.405232Z digest=sha256:ad267e9929e3b0ac16b2d22dcb993da49e471fd5073c8e0eb3d288517546a699

Observation 48e7c0db-00d0-4b69-b982-7f327639fb10 · outbound

This paper cites an unresolved cited work.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Unresolved cited work

Reference 67

Resolution
unresolved
raw_fallback, observed 2026-08-09T12:29:04.936012Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.410909Z digest=sha256:0db61193414f10cefb0d9269cd64c4dd25e529e50a920f5b4fe7d1cb919f75bf

Observation b40e6d35-b14a-452a-81ba-bde747e28498 · outbound

This paper cites VN-EGNN: E(3)-Equivariant Graph Neural Networks with Virtual Nodes Enhance Protein Binding Site Identification.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking VN-EGNN: E(3)-Equivariant Graph Neural Networks with Virtual Nodes Enhance Protein Binding Site Identification

Reference 68

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.417435Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.417435Z digest=sha256:85af169b3d5e29bdc691b9ca8528320e457e4118105591659a865aa846cd6f95

Observation e0c7ff9b-0aa8-4e88-bf3a-210201f5f7b7 · outbound

This paper cites P.; Tiwary, P.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking P.; Tiwary, P

Reference 69

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:04.918862Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.424413Z digest=sha256:651a8784f5abb553a6fe356268cc833f1e98a74dede10c41de2bbb134fec56aa

Observation f5e6ee43-493e-4d8e-ad0f-52eadd8f0800 · outbound

This paper cites an unresolved cited work.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Unresolved cited work

Reference 70

Resolution
unresolved
raw_fallback, observed 2026-08-09T12:29:04.898828Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.429671Z digest=sha256:cf10da483ca2f3fc0dc67d94c044859afd60c2b5f8f2122f2cb3a36f18ce8547

Observation 0dd8dc43-a658-47f5-b82d-149a1d87b67e · outbound

This paper cites M.; Zielenkiewicz, P.; Siedlecki, P.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking M.; Zielenkiewicz, P.; Siedlecki, P

Reference 71

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:04.880150Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.434681Z digest=sha256:5cf01ba9cb4d93cd426fba60a0d7ecd7a071eb8b5a8ff8e9a6c522c4ee5ccc44

Observation d470863d-a874-445a-b379-e6d5c3572f7f · outbound

This paper cites Improving protein-ligand bind- ing site prediction accuracy by classification of inner pocket points using local features.Journal of chemin- formatics2015,7, 1–13.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Improving protein-ligand bind- ing site prediction accuracy by classification of inner pocket points using local features.Journal of chemin- formatics2015,7, 1–13

Reference 72

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:04.862934Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.439722Z digest=sha256:2907972e6cef9e358414073b1a344d1dfdb9d664b373a031bc0f0bddab502f51

Observation deb869a6-bf78-4406-adc0-27d8e2c08eac · outbound

This paper cites an unresolved cited work.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Unresolved cited work

Reference 73

Resolution
unresolved
raw_fallback, observed 2026-08-09T12:29:04.844095Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.444537Z digest=sha256:e8130847616f1b486e3c263a8c735a7dacedcd5d2f949e6855c1a2c3f46ec9c6

Observation 6c0bddab-5ff4-4917-89ab-7baada7cee21 · outbound

This paper cites Fpocket: an open source platform for ligand pocket detection.BMC bioinformatics2009,10, 1–11.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Fpocket: an open source platform for ligand pocket detection.BMC bioinformatics2009,10, 1–11

Reference 74

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:04.826939Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.450284Z digest=sha256:d931a6d6a51ca04727677f8bb3aeabb63ac6423860198be2c4ae78801e23cf26

Observation a188972d-badb-4011-9021-e18b044ff626 · outbound

This paper cites an unresolved cited work.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Unresolved cited work

Reference 75

Resolution
unresolved
raw_fallback, observed 2026-08-09T12:29:04.809099Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.455476Z digest=sha256:9f7ffbf50e456721b45c7be3efbe7d9c1675a74c75a53edff870c95f1de41c4c

Observation ebb48136-428a-4fe2-85cc-c33a07c01767 · outbound

This paper cites PGBind: pocket-guided explicit attention learning for protein– ligand docking.Briefings in Bioinformatics2024,25, bbae455.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking PGBind: pocket-guided explicit attention learning for protein– ligand docking.Briefings in Bioinformatics2024,25, bbae455

Reference 76

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:04.790349Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.460548Z digest=sha256:8ca038b357ab9be7d26f52ad82194dd111b3b225854bb8858732e5d813aad78a

Observation f7eb94f2-d5da-4c22-8651-7e5405fd5860 · outbound

This paper cites U-Net: Convolutional Networks for Biomedical Image Segmentation.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking U-Net: Convolutional Networks for Biomedical Image Segmentation

Reference 77

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.465745Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.465745Z digest=sha256:d42e059fe54b8c626df88ddce886ec59ef8bcc237f5c0ce54e5cc4a526865019

Observation 2f7c0c17-1245-46d3-a060-1bc93bc21ecd · outbound

This paper cites Deep residual learning for image recognition.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Deep residual learning for image recognition

Reference 78

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:04.773492Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.471260Z digest=sha256:0648278f4a0166bc2ae953c5305ef0ac7a33b4ad73d2a1516db1c6f9965a3b11

Observation 8f6f6693-b2fc-4e07-a82e-bd53c58168d4 · outbound

This paper cites Squeeze-and-excitation net- works.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Squeeze-and-excitation net- works

Reference 79

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:04.756783Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.476205Z digest=sha256:07fe95a7586c66523d2b06b88561e479418f41dd5a3181f1263432b953d232df

Observation 64c88dd9-28b3-4521-93a6-5d0ca4f7bb19 · outbound

This paper cites Breast cancer histopathological image classification using convolu- tional neural networks with small SE-ResNet module.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Breast cancer histopathological image classification using convolu- tional neural networks with small SE-ResNet module

Reference 80

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:04.739748Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.481394Z digest=sha256:81c916fb063322a32fb944cdc3f6ea82dc9579fa15cca5d6a0621f8db9ea9e50

Observation 9bc21b49-6854-4356-b34d-b29e776a0ba7 · outbound

This paper cites Enhancing Open-World Bacterial Raman Spectra Identification by Feature Regularization for Im- proved Resilience against Unknown Classes.Chemical & Biomedical Imaging2024,2, 442–452.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Enhancing Open-World Bacterial Raman Spectra Identification by Feature Regularization for Im- proved Resilience against Unknown Classes.Chemical & Biomedical Imaging2024,2, 442–452

Reference 81

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:04.722731Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.486454Z digest=sha256:95fff3e19b9650bb9c6783237af949eeb6c912f856c52535aa41e77a25bfd6f0

Observation b5984a72-e2b6-4e0e-88fc-a9f6f4b8da4d · outbound

This paper cites sc- PDB: a 3D-database of ligandable binding sites—10 years on.Nucleic Acids Research2015,43, D399– D404.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking sc- PDB: a 3D-database of ligandable binding sites—10 years on.Nucleic Acids Research2015,43, D399– D404

Reference 82

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:04.703828Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.491437Z digest=sha256:472d6855bfedaee2117e940e52e2959f16712fa661a0258d368d1a070cf9ffde

Observation 598c2765-9f53-4f26-8d24-6f53849e08cc · outbound

This paper cites Comparison and druggability prediction of protein–ligand binding sites from pharmacophore- annotated cavity shapes.Journal of Chemical Informa- tion and Modeling2012,52, 2287–2299.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Comparison and druggability prediction of protein–ligand binding sites from pharmacophore- annotated cavity shapes.Journal of Chemical Informa- tion and Modeling2012,52, 2287–2299

Reference 83

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:04.684443Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.496813Z digest=sha256:9319d71d43b239c72aeabbc02ba653ce55446f797ad36bb080520dc490f92873

Observation e8d99038-da74-4659-8ce1-7b5e7e29bc28 · outbound

This paper cites How to measure the similarity between protein ligand-binding sites?Current Computer-Aided Drug Design2008,4, 209.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking How to measure the similarity between protein ligand-binding sites?Current Computer-Aided Drug Design2008,4, 209

Reference 84

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:04.664097Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.503389Z digest=sha256:a74516a6ceae4047f7bd7d8f044561fb9ed10ebbdfa263b4659342d6a7fdb6d9

Observation 78ee5418-23ae-4bd3-ace3-405e6575663c · outbound

This paper cites Why is Tanimoto index an appropriate choice for fingerprint-based sim- ilarity calculations?Journal of Cheminformatics2015, 7, 1–13.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Why is Tanimoto index an appropriate choice for fingerprint-based sim- ilarity calculations?Journal of Cheminformatics2015, 7, 1–13

Reference 85

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:04.647535Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.508526Z digest=sha256:f475c2c5148cf7c3bd04c2ab58e033f136f1202514d06caf0783ecf798d00591

Observation c8f83229-2f98-4cdd-8b48-06a37d1dddc4 · outbound

This paper cites https://github.com/ gnina/tfbio, 2018; Accessed: YYYY-MM-DD.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking https://github.com/ gnina/tfbio, 2018; Accessed: YYYY-MM-DD

Reference 86

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:04.629462Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.514049Z digest=sha256:1ba05916c44b185a951c5d8aef7b95679a86a4a701f1e371918558db5db92df3

Observation 5a3ea54a-d58d-4cb4-99c2-7ace9542a986 · outbound

This paper cites SoftSeg: Advan- tages of soft versus binary training for image segmen- tation.Medical Image Analysis2021,71, 102038.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking SoftSeg: Advan- tages of soft versus binary training for image segmen- tation.Medical Image Analysis2021,71, 102038

Reference 87

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:04.612030Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.520350Z digest=sha256:d0d1bff327c6c9282c57984212017a67336f6cf358110b501a703527bbad026a

Observation f4c7b807-21fd-48c8-bd2a-b0865071576a · outbound

This paper cites an unresolved cited work.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Unresolved cited work

Reference 88

Resolution
unresolved
raw_fallback, observed 2026-08-09T12:29:04.590394Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.525736Z digest=sha256:938e05ca477477b78d29f87dfa6a0d33ff5bf47826752fc0a3763714d7c2d72d

Observation adbd67bc-abeb-48a0-aa7e-964f87939aff · outbound

This paper cites V-net: Fully convolutional neural networks for volumetric medical image segmentation.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking V-net: Fully convolutional neural networks for volumetric medical image segmentation

Reference 89

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:04.571269Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.531678Z digest=sha256:731e617caccfcbfb31a9300b0fad4f818750736ca952d2c8f78a72646e176fd8

Observation 1f610957-0da1-454b-980d-f396b626be4a · outbound

This paper cites Focal Loss for Dense Object Detection.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Focal Loss for Dense Object Detection

Reference 90

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:04.554152Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.536632Z digest=sha256:2eea73130c128c97f86d1f42a738302435117e59749db7e623faf7c3c15debb8

Observation f3509954-5713-4e0b-b572-686053b0c13f · outbound

This paper cites an unresolved cited work.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Unresolved cited work

Reference 91

Resolution
unresolved
raw_fallback, observed 2026-08-09T12:29:04.537580Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.541670Z digest=sha256:f24b9e5627c18fd2ed9cb48a52b58d0acec8d1e0ff0002fdc2b8287fe38c23db

Observation 4cf88831-e2de-431f-8414-16c2ac16cddc · outbound

This paper cites an unresolved cited work.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Unresolved cited work

Reference 92

Resolution
unresolved
raw_fallback, observed 2026-08-09T12:29:04.518513Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.546470Z digest=sha256:d4359807b23e571a0c4230e9d5fd0507922dcac069743d6a14e6bfd5bd701c2a

Observation fdd5db03-e4c0-49ef-82ab-cc72512b5f09 · outbound

This paper cites an unresolved cited work.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Unresolved cited work

Reference 93

Resolution
unresolved
raw_fallback, observed 2026-08-09T12:29:04.494151Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.552759Z digest=sha256:30c001ef3816917e70776b95f01a80b2f3e8c103c93e639d7a6f2da7936fe1ec

Observation 27dffbc8-00c1-435d-bbd1-3d6d9673173c · outbound

This paper cites Al- phaFold Protein Structure Database: massively expand- ing the structural coverage of protein-sequence space with high-accuracy models.Nucleic Acids Research 2022,50, D439–D444.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Al- phaFold Protein Structure Database: massively expand- ing the structural coverage of protein-sequence space with high-accuracy models.Nucleic Acids Research 2022,50, D439–D444

Reference 94

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:04.474405Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.559665Z digest=sha256:320bf8f27941cd8d2d5e1160b936405d09e173cc986be5d6147000da852d1202

Observation 6667ab55-fc91-4b5f-9c3d-75d9961d4f15 · outbound

This paper cites Rdkit documentation.Release2013,1, 4.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Rdkit documentation.Release2013,1, 4

Reference 95

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:04.452874Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.565574Z digest=sha256:e623a0da7e5efe7286688460c95719376d5f8b2b162f6c8676612182a3dbad9b

Observation 55a87180-1c10-44b2-b73a-479dc11c3aa8 · outbound

This paper cites Comparative assessment of scoring functions: the CASF-2016 update.Journal of chemical information and modeling2018,59, 895–913.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Comparative assessment of scoring functions: the CASF-2016 update.Journal of chemical information and modeling2018,59, 895–913

Reference 96

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:04.434282Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.570567Z digest=sha256:f272c45a5296ffb7f03d3d132281e049d82a219a30d3311ed13417ef7c3f4fe8

Observation dcbf7972-e499-42cc-b58e-911bc8d5655a · outbound

This paper cites DELPHI Scorer: A Machine-Learning-Based Scoring Function for Protein- Ligand Interactions.Journal of Chemical Information and Modeling2017,57, 47–55.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking DELPHI Scorer: A Machine-Learning-Based Scoring Function for Protein- Ligand Interactions.Journal of Chemical Information and Modeling2017,57, 47–55

Reference 97

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:04.415173Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.575696Z digest=sha256:8b034c5710a703a4eb110fb4ab8889c7d4eaa646753c1e4e0e181a27a3682756

Observation e5624148-cb27-4e37-8bd2-9f141cb2deeb · outbound

This paper cites Boosting protein–ligand binding pose prediction and virtual screening based on residue–atom distance likelihood potential and graph transformer.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Boosting protein–ligand binding pose prediction and virtual screening based on residue–atom distance likelihood potential and graph transformer

Reference 98

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:04.396165Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.580373Z digest=sha256:940193d006820a74605c7d8dc01a315bb7f7a8242b27b3d1efba686c02aef124

Observation 7ce6f1aa-61a7-4984-8027-74f0156064bf · outbound

This paper cites L.; Kubra, B.; Sharaf, M.; Emwas, A.-H.; Jaremko, M.; Abdalla, M.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking L.; Kubra, B.; Sharaf, M.; Emwas, A.-H.; Jaremko, M.; Abdalla, M

Reference 99

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:04.374999Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.585117Z digest=sha256:a26128df175639bb4b4f02f3907061653b91cdb58b932b08d904b5372eb540db

Observation 39fbfc9e-219d-43d5-8752-f5e984b30e1e · outbound

This paper cites an unresolved cited work.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Unresolved cited work

Reference 100

Resolution
unresolved
raw_fallback, observed 2026-08-09T12:29:04.356568Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.590276Z digest=sha256:8c02bd98ae70d6e0bfba4a614c623fb79bf46f53dafdf711072dbe6c9e8de60f

Pith citing papers

No inbound Pith citation observations are available.