QDockBank: A Dataset for Ligand Docking on Protein Fragments Predicted on Utility-Level Quantum Computers | Paper Citation Record

Observation 30a28fb6-db57-4763-8e27-d810f71c67e1 · outbound

This paper cites Anatomy of protein pockets and cavities: mea- surement of binding site geometry and implications for ligand design.Protein science, 7(9):1884–1897, 1998.

QDockBank: A Dataset for Ligand Docking on Protein Fragments Predicted on Utility-Level Quantum Computers Anatomy of protein pockets and cavities: mea- surement of binding site geometry and implications for ligand design.Protein science, 7(9):1884–1897, 1998

Reference 1

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Observation 893aae42-f26d-4022-b636-d14509d97019 · outbound

This paper cites Accurate structure predic- tion of biomolecular interactions with alphafold 3.

QDockBank: A Dataset for Ligand Docking on Protein Fragments Predicted on Utility-Level Quantum Computers Accurate structure predic- tion of biomolecular interactions with alphafold 3

Reference 2

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Observation e3852e87-e524-401d-8dca-07d1833434d0 · outbound

This paper cites Highly accurate pro- tein structure prediction with alphafold.nature, 596(7873):583–589, 2021.

QDockBank: A Dataset for Ligand Docking on Protein Fragments Predicted on Utility-Level Quantum Computers Highly accurate pro- tein structure prediction with alphafold.nature, 596(7873):583–589, 2021

Reference 3

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T22:21:11.097560Z

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Observation 0fd8ba6d-8ca3-4b77-b2c6-362f49b5256f · outbound

This paper cites Protein complex prediction with alphafold-multimer.biorxiv, pages 2021–10, 2021.

QDockBank: A Dataset for Ligand Docking on Protein Fragments Predicted on Utility-Level Quantum Computers Protein complex prediction with alphafold-multimer.biorxiv, pages 2021–10, 2021

Reference 4

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T22:21:10.956595Z

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Observation 52c4d548-546a-487f-adc0-506a9d82ce57 · outbound

This paper cites Efficient quan- tum algorithm for lattice protein folding.Quantum Science and Technology, 10(1):015056, 2024.

QDockBank: A Dataset for Ligand Docking on Protein Fragments Predicted on Utility-Level Quantum Computers Efficient quan- tum algorithm for lattice protein folding.Quantum Science and Technology, 10(1):015056, 2024

Reference 5

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T22:21:10.826896Z

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Observation 7bb87ef0-cd27-4a78-af3e-c3e274d441b2 · outbound

This paper cites Protein dock- ing and complementarity.Journal of molecular bi- ology, 221(1):327–346, 1991.

QDockBank: A Dataset for Ligand Docking on Protein Fragments Predicted on Utility-Level Quantum Computers Protein dock- ing and complementarity.Journal of molecular bi- ology, 221(1):327–346, 1991

Reference 6

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T22:21:10.710790Z

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Observation bf0cdb81-0d40-4e2b-b261-a20da2bbb400 · outbound

This paper cites Resource-efficient quan- tum algorithm for protein folding.npj Quantum In- formation, 7(1):38, 2021.

QDockBank: A Dataset for Ligand Docking on Protein Fragments Predicted on Utility-Level Quantum Computers Resource-efficient quan- tum algorithm for protein folding.npj Quantum In- formation, 7(1):38, 2021

Reference 7

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T22:21:10.590169Z

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Observation e55abd01-f9ce-4405-9cd2-9b3f3fe34a0c · outbound

This paper cites A perspective on protein structure prediction using quantum comput- ers.Journal of Chemical Theory and Computation, 20(9):3359–3378, 2024.

QDockBank: A Dataset for Ligand Docking on Protein Fragments Predicted on Utility-Level Quantum Computers A perspective on protein structure prediction using quantum comput- ers.Journal of Chemical Theory and Computation, 20(9):3359–3378, 2024

Reference 8

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T22:21:10.483462Z

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Observation af8dcee4-c8ba-4847-a53c-6dc942c9ccee · outbound

This paper cites The worldwide protein data bank (wwpdb): ensuring a single, uniform archive of pdb data.Nucleic acids research, 35(suppl 1):D301–D303, 2007.

QDockBank: A Dataset for Ligand Docking on Protein Fragments Predicted on Utility-Level Quantum Computers The worldwide protein data bank (wwpdb): ensuring a single, uniform archive of pdb data.Nucleic acids research, 35(suppl 1):D301–D303, 2007

Reference 9

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T22:21:10.324159Z

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Observation 16cd252a-03de-43ec-aab2-9eb503dda451 · outbound

This paper cites Protein data bank (pdb): database of three-dimensional structural information of bio- logical macromolecules.Biological Crystallogra- phy, 54(6):1078–1084, 1998.

QDockBank: A Dataset for Ligand Docking on Protein Fragments Predicted on Utility-Level Quantum Computers Protein data bank (pdb): database of three-dimensional structural information of bio- logical macromolecules.Biological Crystallogra- phy, 54(6):1078–1084, 1998

Reference 10

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T22:21:10.235362Z

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Observation 953eaa9a-1c31-4b17-8a86-6fa8ebc5f172 · outbound

This paper cites Protein data bank (pdb): the sin- gle global macromolecular structure archive.Pro- tein crystallography: methods and protocols, pages 627–641, 2017.

QDockBank: A Dataset for Ligand Docking on Protein Fragments Predicted on Utility-Level Quantum Computers Protein data bank (pdb): the sin- gle global macromolecular structure archive.Pro- tein crystallography: methods and protocols, pages 627–641, 2017

Reference 11

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T22:21:10.136162Z

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Observation c8fdb671-45fd-4f38-8e68-6c93050fbd7a · outbound

This paper cites The protein data bank.Bio- logical Crystallography, 58(6):899–907, 2002.

QDockBank: A Dataset for Ligand Docking on Protein Fragments Predicted on Utility-Level Quantum Computers The protein data bank.Bio- logical Crystallography, 58(6):899–907, 2002

Reference 12

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T22:21:10.026698Z

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Observation 9166005b-dd07-4177-8646-2a72bf630631 · outbound

This paper cites Orengo, Frances M.

QDockBank: A Dataset for Ligand Docking on Protein Fragments Predicted on Utility-Level Quantum Computers Orengo, Frances M

Reference 13

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T22:21:09.860336Z

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Observation 6db2452e-63b6-42e9-b768-c642ebc67454 · outbound

This paper cites The cath database: an extended protein family resource for structural and functional genomics.Nucleic acids research, 31(1):452–455, 2003.

QDockBank: A Dataset for Ligand Docking on Protein Fragments Predicted on Utility-Level Quantum Computers The cath database: an extended protein family resource for structural and functional genomics.Nucleic acids research, 31(1):452–455, 2003

Reference 14

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T22:21:09.708814Z

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Observation 6b8c1ef3-1680-4e29-8b8e-6d15da2f4030 · outbound

This paper cites Scop: a structural classifica- tion of proteins database for the investigation of se- quences and structures.Journal of molecular biol- ogy, 247(4):536–540, 1995.

QDockBank: A Dataset for Ligand Docking on Protein Fragments Predicted on Utility-Level Quantum Computers Scop: a structural classifica- tion of proteins database for the investigation of se- quences and structures.Journal of molecular biol- ogy, 247(4):536–540, 1995

Reference 15

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T22:21:09.605778Z

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Observation 2b10856f-5dc1-4ee1-99b0-e99d31cd35c6 · outbound

This paper cites an unresolved cited work.

QDockBank: A Dataset for Ligand Docking on Protein Fragments Predicted on Utility-Level Quantum Computers Unresolved cited work

Reference 16

Resolution: unresolved; raw_fallback, observed 2026-08-06T22:21:09.456016Z

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Observation 65fff8ac-17eb-4d07-beca-73a3a1668040 · outbound

This paper cites Alphafold protein structure database in 2024: providing structure cov- erage for over 214 million protein sequences.Nu- cleic acids research, 52(D1):D368–D375, 2024.

QDockBank: A Dataset for Ligand Docking on Protein Fragments Predicted on Utility-Level Quantum Computers Alphafold protein structure database in 2024: providing structure cov- erage for over 214 million protein sequences.Nu- cleic acids research, 52(D1):D368–D375, 2024

Reference 17

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T22:21:09.288386Z

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Observation 59371a65-2d81-482b-a330-b000c9c253a7 · outbound

This paper cites Evaluation of alphafold2 structures as docking targets.Protein Science, 32(1):e4530, 2023.

QDockBank: A Dataset for Ligand Docking on Protein Fragments Predicted on Utility-Level Quantum Computers Evaluation of alphafold2 structures as docking targets.Protein Science, 32(1):e4530, 2023

Reference 18

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T22:21:09.150105Z

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Observation 1ab78658-ece4-4497-aeb0-3542a0edd738 · outbound

This paper cites Swisssidechain: a molecular and structural database of non-natural sidechains.Nucleic acids research, 41(D1):D327–D332, 2012.

QDockBank: A Dataset for Ligand Docking on Protein Fragments Predicted on Utility-Level Quantum Computers Swisssidechain: a molecular and structural database of non-natural sidechains.Nucleic acids research, 41(D1):D327–D332, 2012

Reference 19

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T22:21:09.019616Z

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Observation 62439dc7-270f-483f-8cf7-4107292faced · outbound

This paper cites The pdbbind database: methodologies and updates.Journal of medicinal chemistry, 48(12):4111–4119, 2005.

QDockBank: A Dataset for Ligand Docking on Protein Fragments Predicted on Utility-Level Quantum Computers The pdbbind database: methodologies and updates.Journal of medicinal chemistry, 48(12):4111–4119, 2005

Reference 20

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Observation 4a737ccc-fbce-41d3-a725-e042be5a4ad6 · outbound

This paper cites Pdb-wide collection of binding data: current status of the pdbbind database.Bioinformatics, 31(3):405– 412, 2015.

QDockBank: A Dataset for Ligand Docking on Protein Fragments Predicted on Utility-Level Quantum Computers Pdb-wide collection of binding data: current status of the pdbbind database.Bioinformatics, 31(3):405– 412, 2015

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Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T22:21:08.851713Z

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Observation aa777dac-2cab-4161-8faa-b17f7e53dae8 · outbound

This paper cites an unresolved cited work.

QDockBank: A Dataset for Ligand Docking on Protein Fragments Predicted on Utility-Level Quantum Computers Unresolved cited work

Reference 22

Resolution: unresolved; no resolver link, observed 2026-08-06T22:20:13.232324Z

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Observation db25c430-e864-44ca-ab5c-156145673e58 · outbound

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QDockBank: A Dataset for Ligand Docking on Protein Fragments Predicted on Utility-Level Quantum Computers Unresolved cited work

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Observation e2802265-5737-4c0c-ba2e-f4b7b8f54984 · outbound

This paper cites The variational quantum eigensolver: a re- view of methods and best practices.Physics Reports, 986:1–128, 2022.

QDockBank: A Dataset for Ligand Docking on Protein Fragments Predicted on Utility-Level Quantum Computers The variational quantum eigensolver: a re- view of methods and best practices.Physics Reports, 986:1–128, 2022

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Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T22:21:08.493826Z

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Observation b1670711-d606-4376-9527-cee26c449d40 · outbound

This paper cites Evaluating the performance of some lo- cal optimizers for variational quantum classifiers.

QDockBank: A Dataset for Ligand Docking on Protein Fragments Predicted on Utility-Level Quantum Computers Evaluating the performance of some lo- cal optimizers for variational quantum classifiers

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Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T22:21:08.366897Z

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Observation 9c9bbb62-7808-4ac9-a9c9-4aaf18943e34 · outbound

This paper cites Open babel: An open chemical toolbox.

QDockBank: A Dataset for Ligand Docking on Protein Fragments Predicted on Utility-Level Quantum Computers Open babel: An open chemical toolbox

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Observation 87f4a41c-a042-4f8a-af79-65ba0dca9ab4 · outbound

This paper cites Ibm quantum breaks the 100-qubit processor barrier.

QDockBank: A Dataset for Ligand Docking on Protein Fragments Predicted on Utility-Level Quantum Computers Ibm quantum breaks the 100-qubit processor barrier

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Observation 1f52146f-cb72-4ecc-8475-a2230ececea7 · outbound

This paper cites Evidence for the utility of quantum computing before fault tolerance.Nature, 618(7965):500–505, 2023.

QDockBank: A Dataset for Ligand Docking on Protein Fragments Predicted on Utility-Level Quantum Computers Evidence for the utility of quantum computing before fault tolerance.Nature, 618(7965):500–505, 2023

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Observation 2d930f71-2bfd-4d71-b7b4-dc27b459af0c · outbound

This paper cites Engineering high-coherence su- perconducting qubits.Nature Reviews Materials, 6(10):875–891, 2021.

QDockBank: A Dataset for Ligand Docking on Protein Fragments Predicted on Utility-Level Quantum Computers Engineering high-coherence su- perconducting qubits.Nature Reviews Materials, 6(10):875–891, 2021

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Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T22:21:07.975704Z

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Observation b94b8369-52cb-463b-9e57-8a3c8317467e · outbound

This paper cites Error per single-qubit gate below 10- 4 in a superconducting qubit.npj Quantum Information, 9(1):111, 2023.

QDockBank: A Dataset for Ligand Docking on Protein Fragments Predicted on Utility-Level Quantum Computers Error per single-qubit gate below 10- 4 in a superconducting qubit.npj Quantum Information, 9(1):111, 2023

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Observation 0a82b944-3a23-4df3-8959-8ed0e2c6479a · outbound

This paper cites Quantum approximate optimization algorithm: Performance, mechanism, and implementation on near-term de- vices.Physical Review X, 10(2):021067, 2020.

QDockBank: A Dataset for Ligand Docking on Protein Fragments Predicted on Utility-Level Quantum Computers Quantum approximate optimization algorithm: Performance, mechanism, and implementation on near-term de- vices.Physical Review X, 10(2):021067, 2020

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Observation 1a0649b3-77a7-493c-b931-4d25e6aa01ed · outbound

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QDockBank: A Dataset for Ligand Docking on Protein Fragments Predicted on Utility-Level Quantum Computers Tackling the qubit mapping problem for nisq-era quantum de- vices

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Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T22:20:16.928410Z

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Observation d56ce87c-a99e-4e86-837a-0507f1c412ff · outbound

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QDockBank: A Dataset for Ligand Docking on Protein Fragments Predicted on Utility-Level Quantum Computers Qubit mapping based on subgraph isomorphism and fil- tered depth-limited search.IEEE Transactions on Computers, 70(11):1777–1788, 2020

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Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T22:20:16.719778Z

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Observation 5df69084-b5f5-459a-a2fc-309791427c76 · outbound

This paper cites The pdbbind database: Collection of binding affinities for protein- ligand complexes with known three-dimensional structures.Journal of medicinal chemistry, 47(12):2977–2980, 2004.

QDockBank: A Dataset for Ligand Docking on Protein Fragments Predicted on Utility-Level Quantum Computers The pdbbind database: Collection of binding affinities for protein- ligand complexes with known three-dimensional structures.Journal of medicinal chemistry, 47(12):2977–2980, 2004

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Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T22:20:16.568234Z

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Observation e5f84fd8-96b8-43d5-ad35-90756cd70103 · outbound

This paper cites Biopython: freely available python tools for computational molecular biology and bioinformatics.Bioinformatics, 25(11):1422, 2009.

QDockBank: A Dataset for Ligand Docking on Protein Fragments Predicted on Utility-Level Quantum Computers Biopython: freely available python tools for computational molecular biology and bioinformatics.Bioinformatics, 25(11):1422, 2009

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Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T22:20:16.388071Z

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Observation 20d6a780-1182-42be-8aa3-8a1a43dae504 · outbound

This paper cites Biopython: Python tools for computational biology.ACM Sigbio Newsletter, 20(2):15–19, 2000.

QDockBank: A Dataset for Ligand Docking on Protein Fragments Predicted on Utility-Level Quantum Computers Biopython: Python tools for computational biology.ACM Sigbio Newsletter, 20(2):15–19, 2000

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Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T22:20:16.234865Z

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Observation 3ac8a064-7474-4efc-a917-27a2a32c9f4e · outbound

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QDockBank: A Dataset for Ligand Docking on Protein Fragments Predicted on Utility-Level Quantum Computers Pushing the backbone in protein-protein docking.Structure, 24(10):1821–1829, 2016

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Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T22:20:16.075465Z

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Observation 24ecef5b-c58c-4665-a27f-9d164d8ebdf0 · outbound

This paper cites Calcula- tion of protein-ligand binding affinities.Annu.

QDockBank: A Dataset for Ligand Docking on Protein Fragments Predicted on Utility-Level Quantum Computers Calcula- tion of protein-ligand binding affinities.Annu

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Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T22:20:15.955912Z

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Observation ad8fc103-0cc2-487a-8af9-1ad98885d41d · outbound

This paper cites Colabfold: making protein folding ac- cessible to all.Nature methods, 19(6):679–682, 2022.

QDockBank: A Dataset for Ligand Docking on Protein Fragments Predicted on Utility-Level Quantum Computers Colabfold: making protein folding ac- cessible to all.Nature methods, 19(6):679–682, 2022

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Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T22:20:15.796750Z

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Observation accb536c-a813-4506-b568-9b397f0c16f9 · outbound

This paper cites Estima- tion of effective interresidue contact energies from protein crystal structures: quasi-chemical approxi- mation.Macromolecules, 18(3):534–552, 1985.

QDockBank: A Dataset for Ligand Docking on Protein Fragments Predicted on Utility-Level Quantum Computers Estima- tion of effective interresidue contact energies from protein crystal structures: quasi-chemical approxi- mation.Macromolecules, 18(3):534–552, 1985

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Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T22:20:15.604613Z

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Observation b9aa6e64-39c1-4cad-b822-efddd68d745a · outbound

This paper cites On the prediction of protein structure: the significance of the root-mean-square deviation.Journal of molecu- lar biology, 138(2):321–333, 1980.

QDockBank: A Dataset for Ligand Docking on Protein Fragments Predicted on Utility-Level Quantum Computers On the prediction of protein structure: the significance of the root-mean-square deviation.Journal of molecu- lar biology, 138(2):321–333, 1980

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Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T22:20:15.366810Z

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Observation 1f271162-76c6-470b-bb09-dc84c97ea1d6 · outbound

This paper cites Pymol: An open-source molecular graphics tool.CCP4 Newsl.

QDockBank: A Dataset for Ligand Docking on Protein Fragments Predicted on Utility-Level Quantum Computers Pymol: An open-source molecular graphics tool.CCP4 Newsl

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Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T22:20:15.108247Z

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No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation 3b9d1d01-65d9-4c11-b869-4a5e14bb0bbe · outbound

This paper cites Ucsf chimera—a visualization system for exploratory re- search and analysis.Journal of computational chem- istry, 25(13):1605–1612, 2004.

QDockBank: A Dataset for Ligand Docking on Protein Fragments Predicted on Utility-Level Quantum Computers Ucsf chimera—a visualization system for exploratory re- search and analysis.Journal of computational chem- istry, 25(13):1605–1612, 2004

Reference 43

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T22:20:14.948801Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation 57fc882d-70b4-4935-a5f1-ca08ebb8a00a · outbound

This paper cites Vmd: visual molecular dynamics.Journal of molecular graphics, 14(1):33–38, 1996.

QDockBank: A Dataset for Ligand Docking on Protein Fragments Predicted on Utility-Level Quantum Computers Vmd: visual molecular dynamics.Journal of molecular graphics, 14(1):33–38, 1996

Reference 44

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T22:20:14.755926Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Coverage vector

Reference resolution

Outbound references

Pith citing papers