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Paper Citation Record · LEDGER

Tunable mesoscopic numerical model for bacterial biofilms

As of 17 August 2026, this Paper Citation Record lists 26 of 26 outbound references and 0 inbound Pith citation observations for arXiv:2607.23677.

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pith.paper-citation-record.v1
2607.23677 v1

Coverage vector

measured 26 of 26 reference resolution

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Source: paper_references, paper_reference_links, observed 2026-07-30T16:13:44.374513Z

measured 26 of 26 standing notices

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Source: scholarly_work_events, retraction_status_cache, observed 2026-08-17T06:30:58.91139+00:00

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26 of 26 outbound references displayed

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Outbound references

Observation 56645e56-1c32-4ffa-836c-07d52ee16399 · outbound

This paper cites Mechan- ical interactions between bacteria and hydrogels.Scientific reports, 8(1):10893, 2018.

Tunable mesoscopic numerical model for bacterial biofilms Mechan- ical interactions between bacteria and hydrogels.Scientific reports, 8(1):10893, 2018

Reference 1

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Observation dc02020e-22ae-4f8a-aa2a-5e7450d98580 · outbound

This paper cites Picioreanu, M.

Tunable mesoscopic numerical model for bacterial biofilms Picioreanu, M

Reference 2

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Observation 41f96afd-04b1-4ee3-be86-58d3a54a98ae · outbound

This paper cites Pseudomonas biofilm matrix composition and niche biology.FEMS microbiology reviews, 36(4):893–916, 2012.

Tunable mesoscopic numerical model for bacterial biofilms Pseudomonas biofilm matrix composition and niche biology.FEMS microbiology reviews, 36(4):893–916, 2012

Reference 3

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Observation 5504e644-7034-4588-86dd-a23c83534565 · outbound

This paper cites an unresolved cited work.

Tunable mesoscopic numerical model for bacterial biofilms Unresolved cited work

Reference 4

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Observation 14718a26-f9f0-470d-a3b4-47afe4109f57 · outbound

This paper cites Clinically addressing biofilm in chronic wounds.Advances in wound care, 1(3):127–132, 2012.

Tunable mesoscopic numerical model for bacterial biofilms Clinically addressing biofilm in chronic wounds.Advances in wound care, 1(3):127–132, 2012

Reference 5

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Observation f2e3a63a-05b3-4fc5-aa3e-7bc4f0f94363 · outbound

This paper cites The consequences of biofilm dispersal on the host.Scientific reports, 8(1):10738, 2018.

Tunable mesoscopic numerical model for bacterial biofilms The consequences of biofilm dispersal on the host.Scientific reports, 8(1):10738, 2018

Reference 6

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Observation 0a46fa00-0c5d-44f8-a04d-bd8e71ff8eac · outbound

This paper cites In situ rheology of staphy- lococcus epidermidis bacterial biofilms.Soft matter, 9(1):122–131, 2013.

Tunable mesoscopic numerical model for bacterial biofilms In situ rheology of staphy- lococcus epidermidis bacterial biofilms.Soft matter, 9(1):122–131, 2013

Reference 7

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Observation 71a42c72-c7ba-4ed5-9299-279995ee594b · outbound

This paper cites Modeling of mesoscale variability in biofilm shear behavior.PLoS One, 11(11):e0165593, 2016.

Tunable mesoscopic numerical model for bacterial biofilms Modeling of mesoscale variability in biofilm shear behavior.PLoS One, 11(11):e0165593, 2016

Reference 8

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Observation b6896def-aa1e-4589-b762-48caafa86392 · outbound

This paper cites Self-adaptation of pseudomonas fluorescens biofilms to hydrodynamic stress.Frontiers in microbiology, 11:588884, 2021.

Tunable mesoscopic numerical model for bacterial biofilms Self-adaptation of pseudomonas fluorescens biofilms to hydrodynamic stress.Frontiers in microbiology, 11:588884, 2021

Reference 9

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Observation 399adbd3-6fe0-463a-8455-77a8b8233df5 · outbound

This paper cites Towards standardized mechanical characterization of microbial biofilms: analysis and critical review.npj Biofilms and Microbiomes, 4(1):17, 2018.

Tunable mesoscopic numerical model for bacterial biofilms Towards standardized mechanical characterization of microbial biofilms: analysis and critical review.npj Biofilms and Microbiomes, 4(1):17, 2018

Reference 10

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Observation ef9cf3d4-905f-43a7-9c70-3715d60df51e · outbound

This paper cites Biofilms and mechanics: a review of experimental techniques and findings.Journal of Physics D: Applied Physics, 50(22):223002, 2017.

Tunable mesoscopic numerical model for bacterial biofilms Biofilms and mechanics: a review of experimental techniques and findings.Journal of Physics D: Applied Physics, 50(22):223002, 2017

Reference 11

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Observation e0ff2f5a-9212-45ae-9e05-ec630af92577 · outbound

This paper cites Spatial orga- nization of different sigma factor activities and c-di-gmp signalling within the three- dimensional landscape of a bacterial biofilm.Open biology, 8(8):180066, 2018.

Tunable mesoscopic numerical model for bacterial biofilms Spatial orga- nization of different sigma factor activities and c-di-gmp signalling within the three- dimensional landscape of a bacterial biofilm.Open biology, 8(8):180066, 2018

Reference 12

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Observation f4e74fcf-6ce2-4a2e-9e29-7f00f3950843 · outbound

This paper cites Artifi- cial biofilms establish the role of matrix interactions in staphylococcal biofilm assembly and disassembly.Scientific reports, 5(1):13081, 2015.

Tunable mesoscopic numerical model for bacterial biofilms Artifi- cial biofilms establish the role of matrix interactions in staphylococcal biofilm assembly and disassembly.Scientific reports, 5(1):13081, 2015

Reference 13

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Observation ceeec2cf-7ea9-4cd9-b9af-b8b9502eaeed · outbound

This paper cites Rigidity and mechanical response in biological structures.

Tunable mesoscopic numerical model for bacterial biofilms Rigidity and mechanical response in biological structures

Reference 14

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Observation 36d5d6ff-b41c-4349-b03f-97d2b0a1dfa4 · outbound

This paper cites The mechanical world of bacteria.Cell, 161(5):988–997, 2015.

Tunable mesoscopic numerical model for bacterial biofilms The mechanical world of bacteria.Cell, 161(5):988–997, 2015

Reference 15

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Observation 5043f14a-a5e1-43aa-ac76-c0f894257569 · outbound

This paper cites As above, so below, and also in between: mesoscale active matter in fluids.Soft matter, 15(44):8946–8950, 2019.

Tunable mesoscopic numerical model for bacterial biofilms As above, so below, and also in between: mesoscale active matter in fluids.Soft matter, 15(44):8946–8950, 2019

Reference 16

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Observation 01f61605-d596-4748-a513-1fc29c8b8fee · outbound

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Tunable mesoscopic numerical model for bacterial biofilms Unresolved cited work

Reference 17

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Observation 99ec3728-d4a4-47b8-b49b-00f9acbd536e · outbound

This paper cites Espanol and P.

Tunable mesoscopic numerical model for bacterial biofilms Espanol and P

Reference 18

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Observation 90490fe8-d6ed-4692-a568-4ad1c01dc2db · outbound

This paper cites Rhe- ology of pseudomonas fluorescens biofilms: From experiments to predictive dpd meso- scopic modeling.The Journal of Chemical Physics, 158(7), 2023.

Tunable mesoscopic numerical model for bacterial biofilms Rhe- ology of pseudomonas fluorescens biofilms: From experiments to predictive dpd meso- scopic modeling.The Journal of Chemical Physics, 158(7), 2023

Reference 19

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Observation 6c653e5f-4436-447e-8912-f6742a0d028a · outbound

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Tunable mesoscopic numerical model for bacterial biofilms Unresolved cited work

Reference 20

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Observation 561c638b-a578-4b5c-859d-318754944a96 · outbound

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Tunable mesoscopic numerical model for bacterial biofilms Unresolved cited work

Reference 21

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Observation f11c58ed-e353-4ca6-945b-aa65b54d2014 · outbound

This paper cites Modeling biofilm formation on dynamically reconfigurable composite surfaces.Langmuir, 34(4):1807–1816, 2018.

Tunable mesoscopic numerical model for bacterial biofilms Modeling biofilm formation on dynamically reconfigurable composite surfaces.Langmuir, 34(4):1807–1816, 2018

Reference 22

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Observation ebafa36b-69d0-48ab-8f26-4dab3c1e6d60 · outbound

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Tunable mesoscopic numerical model for bacterial biofilms Unresolved cited work

Reference 23

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Observation 090f5de2-58fd-4d4b-89a1-dd5dc83f5e86 · outbound

This paper cites Fast parallel algorithms for short-range molecular dynamics.J.

Tunable mesoscopic numerical model for bacterial biofilms Fast parallel algorithms for short-range molecular dynamics.J

Reference 24

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Observation 621de000-4da5-4a4b-b055-b21ff670e767 · outbound

This paper cites A general method for numerically simulating the stochastic time evolution of coupled chemical reactions.Journal of computational physics, 22(4):403– 434, 1976.

Tunable mesoscopic numerical model for bacterial biofilms A general method for numerically simulating the stochastic time evolution of coupled chemical reactions.Journal of computational physics, 22(4):403– 434, 1976

Reference 25

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source=pdf_text observed=2026-07-30T16:13:44.277344Z digest=sha256:8103a4dcb863d1096d051d2a58684136e5906c020cce8e515f12f6f277bd489e

Observation 4227a78a-a238-4d28-a9ae-87c74ae3dc17 · outbound

This paper cites Exact stochastic simulation of coupled chemical reactions.The journal of physical chemistry, 81(25):2340–2361, 1977.

Tunable mesoscopic numerical model for bacterial biofilms Exact stochastic simulation of coupled chemical reactions.The journal of physical chemistry, 81(25):2340–2361, 1977

Reference 26

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