Insights into the role of dynamical features in protein complex formation: the case of SARS-CoV-2 spike binding with ACE2 | Paper Citation Record

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This paper cites Computational approaches to predict protein–protein interactions in crowded cellular environments.

Insights into the role of dynamical features in protein complex formation: the case of SARS-CoV-2 spike binding with ACE2 Computational approaches to predict protein–protein interactions in crowded cellular environments

Reference 1

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This paper cites Recent advances in the development of protein–protein interactions modulators: mechanisms and clinical trials.

Insights into the role of dynamical features in protein complex formation: the case of SARS-CoV-2 spike binding with ACE2 Recent advances in the development of protein–protein interactions modulators: mechanisms and clinical trials

Reference 2

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This paper cites Electrostatic complementarity at the interface drives transient protein-protein interactions.

Insights into the role of dynamical features in protein complex formation: the case of SARS-CoV-2 spike binding with ACE2 Electrostatic complementarity at the interface drives transient protein-protein interactions

Reference 3

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This paper cites Compact assessment of molecular surface complementarities enhances neural network-aided prediction of key binding residues.Journal of Chemical Information and Modeling , 2025.

Insights into the role of dynamical features in protein complex formation: the case of SARS-CoV-2 spike binding with ACE2 Compact assessment of molecular surface complementarities enhances neural network-aided prediction of key binding residues.Journal of Chemical Information and Modeling , 2025

Reference 4

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This paper cites Exploring neural networks to uncover information-richer features for protein interaction prediction.

Insights into the role of dynamical features in protein complex formation: the case of SARS-CoV-2 spike binding with ACE2 Exploring neural networks to uncover information-richer features for protein interaction prediction

Reference 5

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This paper cites Prediction of protein-protein interaction strength using domain features with supervised regression.

Insights into the role of dynamical features in protein complex formation: the case of SARS-CoV-2 spike binding with ACE2 Prediction of protein-protein interaction strength using domain features with supervised regression

Reference 6

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This paper cites Computational optimization of angiotensin-converting enzyme 2 for sars-cov-2 spike molecular recognition.

Insights into the role of dynamical features in protein complex formation: the case of SARS-CoV-2 spike binding with ACE2 Computational optimization of angiotensin-converting enzyme 2 for sars-cov-2 spike molecular recognition

Reference 7

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This paper cites Shape complementarity optimization of antibody–antigen interfaces: The application to sars-cov-2 spike protein.

Insights into the role of dynamical features in protein complex formation: the case of SARS-CoV-2 spike binding with ACE2 Shape complementarity optimization of antibody–antigen interfaces: The application to sars-cov-2 spike protein

Reference 8

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This paper cites Quantifying protein–protein interactions in molecular simulations.

Insights into the role of dynamical features in protein complex formation: the case of SARS-CoV-2 spike binding with ACE2 Quantifying protein–protein interactions in molecular simulations

Reference 9

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This paper cites A highly accurate metadynamics-based dissociation free energy method to calculate protein–protein and protein–ligand binding potencies.

Insights into the role of dynamical features in protein complex formation: the case of SARS-CoV-2 spike binding with ACE2 A highly accurate metadynamics-based dissociation free energy method to calculate protein–protein and protein–ligand binding potencies

Reference 10

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This paper cites Computational prediction of protein–protein binding affinities.

Insights into the role of dynamical features in protein complex formation: the case of SARS-CoV-2 spike binding with ACE2 Computational prediction of protein–protein binding affinities

Reference 11

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This paper cites On the binding affinity of macromolecular interactions: daring to ask why proteins interact.

Insights into the role of dynamical features in protein complex formation: the case of SARS-CoV-2 spike binding with ACE2 On the binding affinity of macromolecular interactions: daring to ask why proteins interact

Reference 12

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This paper cites Spatial organization of hydrophobic and charged residues affects protein thermal stability and binding affinity.

Insights into the role of dynamical features in protein complex formation: the case of SARS-CoV-2 spike binding with ACE2 Spatial organization of hydrophobic and charged residues affects protein thermal stability and binding affinity

Reference 13

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This paper cites Dominant forces in protein folding.

Insights into the role of dynamical features in protein complex formation: the case of SARS-CoV-2 spike binding with ACE2 Dominant forces in protein folding

Reference 14

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This paper cites A statistical thermo- dynamic model of the protein ensemble.

Insights into the role of dynamical features in protein complex formation: the case of SARS-CoV-2 spike binding with ACE2 A statistical thermo- dynamic model of the protein ensemble

Reference 15

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This paper cites Model-free approach to the interpretation of nuclear magnetic resonance relaxation in macromolecules.

Insights into the role of dynamical features in protein complex formation: the case of SARS-CoV-2 spike binding with ACE2 Model-free approach to the interpretation of nuclear magnetic resonance relaxation in macromolecules

Reference 16

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This paper cites Entropy in molecular recognition by proteins.

Insights into the role of dynamical features in protein complex formation: the case of SARS-CoV-2 spike binding with ACE2 Entropy in molecular recognition by proteins

Reference 17

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This paper cites Simu- lated epidemics in 3d protein structures to detect functional properties.

Insights into the role of dynamical features in protein complex formation: the case of SARS-CoV-2 spike binding with ACE2 Simu- lated epidemics in 3d protein structures to detect functional properties

Reference 18

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This paper cites gmxmmpbsa: a new tool to perform end-state free energy calculations with gromacs.

Insights into the role of dynamical features in protein complex formation: the case of SARS-CoV-2 spike binding with ACE2 gmxmmpbsa: a new tool to perform end-state free energy calculations with gromacs

Reference 19

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Insights into the role of dynamical features in protein complex formation: the case of SARS-CoV-2 spike binding with ACE2 Evolution of alchemical free energy methods in drug discovery

Reference 20

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This paper cites From static to dynamic structures: Improving binding affinity prediction with graph-based deep learning.

Insights into the role of dynamical features in protein complex formation: the case of SARS-CoV-2 spike binding with ACE2 From static to dynamic structures: Improving binding affinity prediction with graph-based deep learning

Reference 21

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This paper cites Structural basis for the recognition of the sars-cov-2 by full-length human ace2.

Insights into the role of dynamical features in protein complex formation: the case of SARS-CoV-2 spike binding with ACE2 Structural basis for the recognition of the sars-cov-2 by full-length human ace2

Reference 22

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This paper cites Potent sars-cov-2 neutralizing antibodies directed against spike n-terminal domain 13 target a single supersite.

Insights into the role of dynamical features in protein complex formation: the case of SARS-CoV-2 spike binding with ACE2 Potent sars-cov-2 neutralizing antibodies directed against spike n-terminal domain 13 target a single supersite

Reference 23

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Insights into the role of dynamical features in protein complex formation: the case of SARS-CoV-2 spike binding with ACE2 A pneumonia outbreak associated with a new coronavirus of probable bat origin

Reference 24

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Insights into the role of dynamical features in protein complex formation: the case of SARS-CoV-2 spike binding with ACE2 New sars-cov-2 variants—clinical, public health, and vaccine implications

Reference 25

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Insights into the role of dynamical features in protein complex formation: the case of SARS-CoV-2 spike binding with ACE2 Rna virus mutations and fitness for survival

Reference 26

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This paper cites Genome heterogeneity drives the evolution of species.Phys.

Insights into the role of dynamical features in protein complex formation: the case of SARS-CoV-2 spike binding with ACE2 Genome heterogeneity drives the evolution of species.Phys

Reference 27

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This paper cites Temporal signal and the phylodynamic threshold of sars-cov-2.

Insights into the role of dynamical features in protein complex formation: the case of SARS-CoV-2 spike binding with ACE2 Temporal signal and the phylodynamic threshold of sars-cov-2

Reference 28

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This paper cites Exploring the structural distribution of genetic variation in sars-cov-2 with the covid-3d online resource.

Insights into the role of dynamical features in protein complex formation: the case of SARS-CoV-2 spike binding with ACE2 Exploring the structural distribution of genetic variation in sars-cov-2 with the covid-3d online resource

Reference 29

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This paper cites Inferring the stabilization effects of SARS-CoV-2 variants on the binding with ACE2 receptor.

Insights into the role of dynamical features in protein complex formation: the case of SARS-CoV-2 spike binding with ACE2 Inferring the stabilization effects of SARS-CoV-2 variants on the binding with ACE2 receptor

Reference 30

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This paper cites Receptor binding and complex structures of human ace2 to spike rbd from omicron and delta sars-cov-2.

Insights into the role of dynamical features in protein complex formation: the case of SARS-CoV-2 spike binding with ACE2 Receptor binding and complex structures of human ace2 to spike rbd from omicron and delta sars-cov-2

Reference 31

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This paper cites Differences in the organization of interface residues tunes the stability of the sars-cov-2 spike-ace2 complex.

Insights into the role of dynamical features in protein complex formation: the case of SARS-CoV-2 spike binding with ACE2 Differences in the organization of interface residues tunes the stability of the sars-cov-2 spike-ace2 complex

Reference 32

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This paper cites Inferring the stabilization effects of sars-cov-2 variants on the binding with ace2 receptor.

Insights into the role of dynamical features in protein complex formation: the case of SARS-CoV-2 spike binding with ACE2 Inferring the stabilization effects of sars-cov-2 variants on the binding with ace2 receptor

Reference 33

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This paper cites Covid-19 patient serum less potently inhibits ace2-rbd binding for various sars-cov-2 rbd mutants.

Insights into the role of dynamical features in protein complex formation: the case of SARS-CoV-2 spike binding with ACE2 Covid-19 patient serum less potently inhibits ace2-rbd binding for various sars-cov-2 rbd mutants

Reference 34

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This paper cites Genomic characterisation of an emergent sars-cov-2 lineage in manaus: preliminary findings.

Insights into the role of dynamical features in protein complex formation: the case of SARS-CoV-2 spike binding with ACE2 Genomic characterisation of an emergent sars-cov-2 lineage in manaus: preliminary findings

Reference 35

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This paper cites Confirmed reinfection with severe acute respiratory syndrome coronavirus 2 (sars-cov-2) variant voc-202012/01.

Insights into the role of dynamical features in protein complex formation: the case of SARS-CoV-2 spike binding with ACE2 Confirmed reinfection with severe acute respiratory syndrome coronavirus 2 (sars-cov-2) variant voc-202012/01

Reference 36

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This paper cites The disease severity and clinical outcomes of the sars-cov-2 variants of concern.

Insights into the role of dynamical features in protein complex formation: the case of SARS-CoV-2 spike binding with ACE2 The disease severity and clinical outcomes of the sars-cov-2 variants of concern

Reference 37

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T10:20:06.669251Z

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Observation d1d7a0bf-a8f2-460f-813b-c7b5a66e909c · outbound

This paper cites Mortality risk in patients infected with sars-cov-2 of the lineage b.

Insights into the role of dynamical features in protein complex formation: the case of SARS-CoV-2 spike binding with ACE2 Mortality risk in patients infected with sars-cov-2 of the lineage b

Reference 38

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This paper cites Sars-cov-2 variant of concern 202012/01 has about twofold replicative advantage and acquires concerning mutations.Viruses, 13(3):392, 2021.

Insights into the role of dynamical features in protein complex formation: the case of SARS-CoV-2 spike binding with ACE2 Sars-cov-2 variant of concern 202012/01 has about twofold replicative advantage and acquires concerning mutations.Viruses, 13(3):392, 2021

Reference 39

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T10:20:06.270938Z

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This paper cites What scientists know about new, fast-spreading coronavirus variants.

Insights into the role of dynamical features in protein complex formation: the case of SARS-CoV-2 spike binding with ACE2 What scientists know about new, fast-spreading coronavirus variants

Reference 40

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T10:20:06.089843Z

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This paper cites Increased transmissibility and global spread of sars-cov-2 variants of concern as at june 2021.

Insights into the role of dynamical features in protein complex formation: the case of SARS-CoV-2 spike binding with ACE2 Increased transmissibility and global spread of sars-cov-2 variants of concern as at june 2021

Reference 41

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T10:20:05.871835Z

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Observation acfbc713-8dae-4cdf-a281-f00f6fae9dce · outbound

This paper cites Omicron: a mysterious variant of concern.

Insights into the role of dynamical features in protein complex formation: the case of SARS-CoV-2 spike binding with ACE2 Omicron: a mysterious variant of concern

Reference 42

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T10:20:05.654370Z

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Observation 85883cd2-8efd-40e9-9015-f3954843d482 · outbound

This paper cites Advances in the omicron variant development.

Insights into the role of dynamical features in protein complex formation: the case of SARS-CoV-2 spike binding with ACE2 Advances in the omicron variant development

Reference 43

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T10:20:05.437796Z

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Observation 8c6cc846-52df-4e5a-ba1b-51d0ab065153 · outbound

This paper cites Induced fit, conformational selection and independent dynamic segments: an extended view of binding events.

Insights into the role of dynamical features in protein complex formation: the case of SARS-CoV-2 spike binding with ACE2 Induced fit, conformational selection and independent dynamic segments: an extended view of binding events

Reference 44

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T10:20:05.244876Z

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Observation c8ed1c32-9215-4c40-adea-b259960a2d07 · outbound

This paper cites Dynam- ical changes of sars-cov-2 spike variants in the highly immunogenic regions impact the viral antibodies escaping.

Insights into the role of dynamical features in protein complex formation: the case of SARS-CoV-2 spike binding with ACE2 Dynam- ical changes of sars-cov-2 spike variants in the highly immunogenic regions impact the viral antibodies escaping

Reference 45

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T10:20:05.146412Z

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Observation f3a073a8-b8f7-4aa0-908c-842f19875a4c · outbound

This paper cites In-silico evidence for a two receptor based strategy of sars-cov-2.

Insights into the role of dynamical features in protein complex formation: the case of SARS-CoV-2 spike binding with ACE2 In-silico evidence for a two receptor based strategy of sars-cov-2

Reference 46

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T10:20:05.101089Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation a7438dcc-0d27-4cd8-9eaa-cfdbef03a41e · outbound

This paper cites Van Der Spoel, E.

Insights into the role of dynamical features in protein complex formation: the case of SARS-CoV-2 spike binding with ACE2 Van Der Spoel, E

Reference 47

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T10:20:05.055814Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 14ad52d0-765a-4151-b23e-1220ac8420df · outbound

This paper cites an unresolved cited work.

Insights into the role of dynamical features in protein complex formation: the case of SARS-CoV-2 spike binding with ACE2 Unresolved cited work

Reference 48

Resolution: unresolved; raw_fallback, observed 2026-08-07T10:20:05.014402Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 13e09248-2be8-48b9-a0d8-168845ee10ff · outbound

This paper cites Jorgensen, Jayaraman Chandrasekhar, Jeffry D.

Insights into the role of dynamical features in protein complex formation: the case of SARS-CoV-2 spike binding with ACE2 Jorgensen, Jayaraman Chandrasekhar, Jeffry D

Reference 49

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T10:20:04.976183Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 337f5bc2-c344-4975-b583-b60a0a37d047 · outbound

This paper cites Bussi, D.

Insights into the role of dynamical features in protein complex formation: the case of SARS-CoV-2 spike binding with ACE2 Bussi, D

Reference 50

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T10:20:04.949674Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 468716c6-14cc-41af-af77-44861814a0e7 · outbound

This paper cites Parrinello and A.

Insights into the role of dynamical features in protein complex formation: the case of SARS-CoV-2 spike binding with ACE2 Parrinello and A

Reference 51

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T10:20:04.930500Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 3d2aed1d-9dd0-4a6a-ab5d-e4e2d027f472 · outbound

This paper cites an unresolved cited work.

Insights into the role of dynamical features in protein complex formation: the case of SARS-CoV-2 spike binding with ACE2 Unresolved cited work

Reference 52

Resolution: unresolved; raw_fallback, observed 2026-08-07T10:20:04.912215Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation fa614783-0e65-403e-ab8a-c249e1bb618c · outbound

This paper cites an unresolved cited work.

Insights into the role of dynamical features in protein complex formation: the case of SARS-CoV-2 spike binding with ACE2 Unresolved cited work

Reference 53

Resolution: unresolved; raw_fallback, observed 2026-08-07T10:20:04.891901Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

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