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Paper Citation Record · LEDGER

State-aware protein-ligand complex prediction using AlphaFold3 with purified sequences

As of 8 August 2026, this Paper Citation Record lists 28 of 28 outbound references and 1 inbound Pith citation observation for arXiv:2506.00147.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2506.00147 v1

Coverage vector

measured 28 of 28 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-07T12:15:53.790427Z

measured 29 of 29 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-08T06:32:00.761636+00:00

measured 1 of 1 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links, observed 2026-08-05T12:34:44.326630Z

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: pith, observed 2026-08-05T12:34:44.500699Z

Reference resolution

28 of 28 outbound references displayed

  • verified exact5
  • verified fuzzy8
  • unresolved15
  • parse uncertain0
  • malformed identifier0
  • metadata mismatch0

External citation measurements

No source-named external measurement is stored.

Outbound references

Observation 7ecd2a7d-e3e1-49df-b00b-4189689335c1 · outbound

This paper cites an unresolved cited work.

State-aware protein-ligand complex prediction using AlphaFold3 with purified sequences Unresolved cited work

Reference 1

Resolution
unresolved
raw_fallback, observed 2026-08-07T12:15:58.391397Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

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Observation 9e553a92-57ec-42d8-8a7e-2b56e703b5b9 · outbound

This paper cites an unresolved cited work.

State-aware protein-ligand complex prediction using AlphaFold3 with purified sequences Unresolved cited work

Reference 2

Resolution
unresolved
raw_fallback, observed 2026-08-07T12:15:58.306260Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T12:15:50.574894Z digest=sha256:419cd6708c58d248b0f234c9a0342eac906e150a63f76cc51bda0ed5c4f55560

Observation e6190d10-8b70-44c1-a80e-22777329e2ee · outbound

This paper cites & Chen, R.

State-aware protein-ligand complex prediction using AlphaFold3 with purified sequences & Chen, R

Reference 3

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:15:58.172208Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

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Observation 4b76ca8d-a7f1-4207-80c6-a91290c8e5e3 · outbound

This paper cites an unresolved cited work.

State-aware protein-ligand complex prediction using AlphaFold3 with purified sequences Unresolved cited work

Reference 4

Resolution
unresolved
no resolver link, observed 2026-08-07T12:15:50.873538Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-07T12:15:50.873538Z digest=sha256:0aab1c08d2b34846b7c3458f0b4342674f857ee0dad6822594c7f87ac4fd1ebd

Observation df6c8eed-3fb5-462e-911d-bd9dbceab59f · outbound

This paper cites an unresolved cited work.

State-aware protein-ligand complex prediction using AlphaFold3 with purified sequences Unresolved cited work

Reference 5

Resolution
unresolved
raw_fallback, observed 2026-08-07T12:15:58.068511Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

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Observation e743063a-4a09-4ebe-b3fe-20ddaa0ea2a0 · outbound

This paper cites & Deane, C.M.

State-aware protein-ligand complex prediction using AlphaFold3 with purified sequences & Deane, C.M

Reference 6

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:15:57.902216Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

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Observation 02f2cc04-fd8e-4d78-8c5e-32ae512c80aa · outbound

This paper cites an unresolved cited work.

State-aware protein-ligand complex prediction using AlphaFold3 with purified sequences Unresolved cited work

Reference 7

Resolution
verified exact
raw_fallback, observed 2026-08-07T12:15:55.254688Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

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Observation ce8928eb-3c6c-4301-a312-38a95e2ffc13 · outbound

This paper cites an unresolved cited work.

State-aware protein-ligand complex prediction using AlphaFold3 with purified sequences Unresolved cited work

Reference 8

Resolution
unresolved
no resolver link, observed 2026-08-07T12:15:51.472221Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-07T12:15:51.472221Z digest=sha256:b59094759230c20fb93e52191904446d5caf31ab53bb3f21cdc40a0e9a1a186a

Observation 7a40b20c-bf78-45a5-9bfd-c2cbf94e7e4c · outbound

This paper cites an unresolved cited work.

State-aware protein-ligand complex prediction using AlphaFold3 with purified sequences Unresolved cited work

Reference 9

Resolution
verified exact
raw_fallback, observed 2026-08-07T12:15:54.904547Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

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Observation 7f3d4a4d-8f07-4b98-b482-6cc99b2bb831 · outbound

This paper cites & Schwede, T.

State-aware protein-ligand complex prediction using AlphaFold3 with purified sequences & Schwede, T

Reference 10

Resolution
verified exact
raw_fallback, observed 2026-08-07T12:15:54.619263Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

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Observation bdf4f506-76a9-44c8-bcb0-9ddb0e143380 · outbound

This paper cites an unresolved cited work.

State-aware protein-ligand complex prediction using AlphaFold3 with purified sequences Unresolved cited work

Reference 11

Resolution
verified exact
raw_fallback, observed 2026-08-07T12:15:54.353096Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T12:15:51.964028Z digest=sha256:cd7c586de3a7a803dadea4fef8a30500bfbc8d30f1826e41e818c972328eeb5c

Observation d5561542-03f8-4f7c-aa0d-c22cc7591183 · outbound

This paper cites Research Square (2025).

State-aware protein-ligand complex prediction using AlphaFold3 with purified sequences Research Square (2025)

Reference 12

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:15:57.807636Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T12:15:52.048407Z digest=sha256:013870f729edc8924573eb3ebe76d92518a7f6d6645c8108a674f253a42f6f2a

Observation 61ac9970-6321-4cfd-9271-528b849aed4e · outbound

This paper cites & Anandkumar, A.

State-aware protein-ligand complex prediction using AlphaFold3 with purified sequences & Anandkumar, A

Reference 13

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:15:57.701653Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T12:15:52.139311Z digest=sha256:f5e0bc30775be85cdaf4f19fb295404db375596277565051ea6cf590f8d69eb9

Observation 89a6a9ea-10ea-4117-a9c9-4c1c760f4b2f · outbound

This paper cites Leveraging Sequence Purification for Accurate Prediction of Multiple Conformational States with AlphaFold2.

State-aware protein-ligand complex prediction using AlphaFold3 with purified sequences Leveraging Sequence Purification for Accurate Prediction of Multiple Conformational States with AlphaFold2

Reference 14

Resolution
verified exact
local_arxiv, observed 2026-08-07T12:15:54.093899Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T12:15:52.195023Z digest=sha256:7b511ff6c259fef957e69e84397b7eddef89685a18e267d390cb9cd056a4cd92

Observation f8b775c4-5f17-4155-9db5-9b97a10b598d · outbound

This paper cites & Misra, A.

State-aware protein-ligand complex prediction using AlphaFold3 with purified sequences & Misra, A

Reference 15

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:15:57.593090Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T12:15:52.323829Z digest=sha256:54a2e0a97bd756ceade99cb81737a02fb26fb3274a77462882d70acb47b5abee

Observation 4a212cba-aaae-444a-b011-790ff7fdc60f · outbound

This paper cites an unresolved cited work.

State-aware protein-ligand complex prediction using AlphaFold3 with purified sequences Unresolved cited work

Reference 16

Resolution
unresolved
raw_fallback, observed 2026-08-07T12:15:57.460800Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T12:15:52.478055Z digest=sha256:4b4dfe129a1ddfdb642dc44afbc6cc8b9199a0ab1caebf81592c273ed816f1f4

Observation 6424e5df-8806-4941-90f3-4eb9257c752f · outbound

This paper cites an unresolved cited work.

State-aware protein-ligand complex prediction using AlphaFold3 with purified sequences Unresolved cited work

Reference 17

Resolution
unresolved
raw_fallback, observed 2026-08-07T12:15:57.356095Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T12:15:52.564653Z digest=sha256:cff9b090f9c6efd933dc4348fbf64a9ced73d09bf38dde2eeed688ea5058a4d3

Observation 18cce144-1003-4980-9b14-fc9b7cdc7620 · outbound

This paper cites an unresolved cited work.

State-aware protein-ligand complex prediction using AlphaFold3 with purified sequences Unresolved cited work

Reference 18

Resolution
unresolved
raw_fallback, observed 2026-08-07T12:15:57.226820Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T12:15:52.640583Z digest=sha256:a53563d0b6fbaa21faf056d927ce32c3253b136127762f25d6b34b803b6b1ab8

Observation 786777f5-6525-410d-b27c-89fb2821f3a7 · outbound

This paper cites an unresolved cited work.

State-aware protein-ligand complex prediction using AlphaFold3 with purified sequences Unresolved cited work

Reference 19

Resolution
unresolved
raw_fallback, observed 2026-08-07T12:15:57.104045Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

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Observation dd02e341-9ca6-40d9-bd9b-63ad5d47d9a5 · outbound

This paper cites an unresolved cited work.

State-aware protein-ligand complex prediction using AlphaFold3 with purified sequences Unresolved cited work

Reference 20

Resolution
unresolved
raw_fallback, observed 2026-08-07T12:15:56.921396Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

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Observation 99f8fe73-0318-425c-80bf-9297ff52e8cd · outbound

This paper cites an unresolved cited work.

State-aware protein-ligand complex prediction using AlphaFold3 with purified sequences Unresolved cited work

Reference 21

Resolution
unresolved
raw_fallback, observed 2026-08-07T12:15:56.753506Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

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Observation 554db2da-f0d6-4917-bfe9-f1f539f25416 · outbound

This paper cites an unresolved cited work.

State-aware protein-ligand complex prediction using AlphaFold3 with purified sequences Unresolved cited work

Reference 22

Resolution
unresolved
raw_fallback, observed 2026-08-07T12:15:56.548136Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

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Observation d0d0965c-c8bf-4a72-ab69-c2164b382e6c · outbound

This paper cites an unresolved cited work.

State-aware protein-ligand complex prediction using AlphaFold3 with purified sequences Unresolved cited work

Reference 23

Resolution
unresolved
raw_fallback, observed 2026-08-07T12:15:56.337694Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T12:15:53.117869Z digest=sha256:de1b8cb71dc5929e29f1f2bf6933f169a7acab6ba6163f3869555a21693f659d

Observation 51f1db47-2b22-459f-989d-ee83242df99e · outbound

This paper cites an unresolved cited work.

State-aware protein-ligand complex prediction using AlphaFold3 with purified sequences Unresolved cited work

Reference 24

Resolution
unresolved
raw_fallback, observed 2026-08-07T12:15:56.184349Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T12:15:53.243390Z digest=sha256:33419fe25ec2c9111b89f09b7d0899ebfe6bd04c602e1947b213efe0b029b9ac

Observation 011ea554-c483-464a-89be-ef81a3e6a014 · outbound

This paper cites & Shaw, D.E.

State-aware protein-ligand complex prediction using AlphaFold3 with purified sequences & Shaw, D.E

Reference 25

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:15:56.006432Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T12:15:53.374241Z digest=sha256:9d48155c6736ac730c16c1ec35b0e6818f9313915622658b31ba07924a5947ab

Observation ec72b50d-ce8c-4989-9703-fbf170338965 · outbound

This paper cites & Ghiringhelli, F.

State-aware protein-ligand complex prediction using AlphaFold3 with purified sequences & Ghiringhelli, F

Reference 26

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:15:55.861658Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T12:15:53.535346Z digest=sha256:47113fa2f5518e33f02425035d9fb42b2781119724c42e89256d8c0f608d186a

Observation 4c7555b2-9520-4cc8-96c1-5b7e2ecc84db · outbound

This paper cites & Torres, R.

State-aware protein-ligand complex prediction using AlphaFold3 with purified sequences & Torres, R

Reference 27

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:15:55.701403Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T12:15:53.658433Z digest=sha256:cda0b02d74cdfd2d44c08ac642b77d3960cc857002ca39b579be8bec63ef8f78

Observation 410bd5a7-8f5b-4685-9bb2-04a8f922f190 · outbound

This paper cites an unresolved cited work.

State-aware protein-ligand complex prediction using AlphaFold3 with purified sequences Unresolved cited work

Reference 28

Resolution
unresolved
raw_fallback, observed 2026-08-07T12:15:55.562907Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T12:15:53.790427Z digest=sha256:97e5c9265cbf5215ffc7d325e235ee5944d387ba7a83516cb55ac00a5594198a

Pith citing papers

Observation 4dbb3a55-cf59-4039-ad44-ece1450a4fd2 · inbound

OTMol: Robust Molecular Structure Comparison via Optimal Transport cites this paper.

OTMol: Robust Molecular Structure Comparison via Optimal Transport State-aware protein-ligand complex prediction using AlphaFold3 with purified sequences

Reference 7

Resolution
verified exact
local_arxiv, observed 2026-08-05T12:34:44.507403Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-05T12:34:44.326630Z digest=sha256:a8ac5f5eccef819b20eab2692e6a593126a7545b8961934676db8f881bcac835